BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg889207
Length=786
Score E
Sequences producing significant alignments: (Bits) Value
AT4G29270.1 | Symbols: | HAD superfamily, subfamily IIIB acid ... 845 0.0
AT4G29276.1 | Symbols: | Pseudogene of AT4G29270; acid phospha... 435 4e-121
AT4G29260.1 | Symbols: | HAD superfamily, subfamily IIIB acid ... 405 3e-112
AT4G29281.1 | Symbols: | Pseudogene of AT4G29270; acid phospha... 220 1e-56
> AT4G29270.1 | Symbols: | HAD superfamily, subfamily IIIB acid
phosphatase | chr4:14423662-14424882 REVERSE LENGTH=940
Length=940
Score = 845 bits (457), Expect = 0.0
Identities = 686/793 (87%), Gaps = 29/793 (4%)
Strand=Plus/Plus
Query 1 ATGACGTTTTCTCGTAGCAGCTCGATTTCCTTCTTCATCCTTGCTTTATTCGGCGTCTTA 60
||||| ||||||||||||||||||||| | ||||||||| ||||||||||| |||||||
Sbjct 35 ATGACTTTTTCTCGTAGCAGCTCGATTACGTTCTTCATCGTTGCTTTATTCACCGTCTTA 94
Query 61 ATTCATCCGGCGATCTCTTCTCGCGTCTCCACCTTCATCAAGCTCCCGAGCTCCGTCGAA 120
||| ||||||||||||||||||||| | | ||||||||||||| | || |||
Sbjct 95 ATTAATCCGGCGATCTCTTCTCGCGCCGCGTCCTTCATCAAGCT-----G--CC-TCG-- 144
Query 121 TCTCGCTCTTCCGA-CGTTTCCTACTGCGAGGGCTGGAGATTGGCTGCCGAGACCAACAA 179
| |||||| | || ||| ||||||||| | |||||||| || || |||||||||||
Sbjct 145 ----G-TCTTCC-ATCGCTTCATACTGCGAGAGTTGGAGATTAGCCGCTGAGACCAACAA 198
Query 180 TGCCGGAACCTGGAGGGTGGTTCCGTCTCAATGCGAAAACTACGTTAAAAACTATATCAA 239
|| ||| |||||| |||| ||||||| |||||||||||||| |||||||||| |||||
Sbjct 199 TGTTGGACCCTGGAAGGTGATTCCGTCCCAATGCGAAAACTATATTAAAAACTACATCAA 258
Query 240 CGGAGGCCAGTTTGACAAAGATTACGATGTAGTCGCTAGTTACGCCATCGCCTACGCTAA 299
|||||||||||| |||||||| |||||||||||||||||||||||||| | |||||||||
Sbjct 259 CGGAGGCCAGTTCGACAAAGACTACGATGTAGTCGCTAGTTACGCCATTGACTACGCTAA 318
Query 300 AACGATCAATCTTGCCGGCA-AAGAAAAGGACGCGTGGGTCTTTGACATCGATGAGACGC 358
|||| |||| ||| ||| | | | ||||||||||||||||||||||||||||||||||
Sbjct 319 AACGGTCAAGGTTGGCGG-AGACGGCAAGGACGCGTGGGTCTTTGACATCGATGAGACGC 377
Query 359 TTCTCTCGAATCTTGAGTACTACAAGGCTCATGGTTACGGGTCTCAACCGTACGACAATA 418
||||||| ||| ||||||||||||||||| |||||||||||||| |||||||||| | ||
Sbjct 378 TTCTCTCCAATATTGAGTACTACAAGGCTAATGGTTACGGGTCTGAACCGTACGATAGTA 437
Query 419 CTTTGTT-CAATGAG-TGGGTGGTAAAAGGAAAAGCCCCAGGTTTTGATGCGAGCTTGAG 476
|| | ||||||| ||| ||| ||||||||||| |||||||| |||||||||||||||
Sbjct 438 -TTAAATACAATGAGGTGG-TGGAAAAAGGAAAAGACCCAGGTTATGATGCGAGCTTGAG 495
Query 477 GCTCTTCAAAGCTCTCAAGAAACTTGGTTTCACTATCATTCTCCTAACCGGCCGAGATGA 536
||||| |||||||||||||||||||||||||||||||||| | ||||| |||||||| ||
Sbjct 496 GCTCTACAAAGCTCTCAAGAAACTTGGTTTCACTATCATTTTACTAACTGGCCGAGACGA 555
Query 537 AAGTCAAAGGAGTATCACCGAGAAAAATCTCCGCGACGCCGGTTATTTCGGTTGGAACCG 596
| |||| || ||| |||||||||||||||| || || |||||||||||||||||||||||
Sbjct 556 AGGTCATAGAAGTGTCACCGAGAAAAATCTTCGGGATGCCGGTTATTTCGGTTGGAACCG 615
Query 597 ACTCCTCTTGAGGGGTCATGAA-GATCAAGG-AAAAGCAGCAACACGGTACAAATCAGAG 654
|||||||||||||||||| || |||||||| |||| ||||||||| ||||||||||||
Sbjct 616 ACTCCTCTTGAGGGGTCAA-AATGATCAAGGGAAAA-CAGCAACACAATACAAATCAGAG 673
Query 655 CAGAGAGCAAAAGTGGTCAAAGAAGGCTACACAATCCATGG-AAGTGCTGGCGATCAATG 713
||| || || |||| || ||||||||||||||||||||||| || | |||| ||||||||
Sbjct 674 CAGCGATCACAAGTTGTAAAAGAAGGCTACACAATCCATGGTAA-TACTGGAGATCAATG 732
Query 714 GAGTGACTTGCAAGGTTTTGCCGTGGCCACTCGTTCCTTCAAAGTCCCAAATCCGATGTA 773
||||||||||| ||||||||||||||| ||||||| ||||||||||||||||| |||||
Sbjct 733 GAGTGACTTGCTAGGTTTTGCCGTGGCTTCTCGTTCTTTCAAAGTCCCAAATCCCATGTA 792
Query 774 CTATATTGCTTGA 786
|||| ||||||||
Sbjct 793 CTATGTTGCTTGA 805
> AT4G29276.1 | Symbols: | Pseudogene of AT4G29270; acid phosphatase
class B family protein | chr4:14426790-14427183 REVERSE
LENGTH=394
Length=394
Score = 435 bits (235), Expect = 4e-121
Identities = 351/403 (87%), Gaps = 24/403 (6%)
Strand=Plus/Plus
Query 1 ATGACGTTTTCTCGTAGCAGCTCGATTTCCTTCTTCATCCTTGC--TTTATTCGGC-GTC 57
|||||||||||||||||||||||||| |||||||||||||| | ||||||| || |||
Sbjct 1 ATGACGTTTTCTCGTAGCAGCTCGATCTCCTTCTTCATCCTCACTTTTTATTC-GCTGTC 59
Query 58 TTAATTCATCCGGCGATCTCTTCTCGCGTCTCCA-CCTTCATCAAGCTCCCGAGCTCCGT 116
||||| |||| |||||||||| | ||||| || ||||||||||||||| ||||||||
Sbjct 60 ATAATTAATCCTACGATCTCTTCACACGTCT-CATCCTTCATCAAGCTCCAGAGCTCCGA 118
Query 117 CGAATCTCGCTCTTCCGACGTTTCCTACTGCGAGGGCTGGAGATTGGCTGCCGAGACCAA 176
||||||||||||||||| || ||||||||||||||||||||||||| | |||||||||||
Sbjct 119 CGAATCTCGCTCTTCCGTCGCTTCCTACTGCGAGGGCTGGAGATTGACCGCCGAGACCAA 178
Query 177 CAATGCCGGAACCTGGAGGGTGGTTCCGTCTCAATGCGAAAACTACGTTAAAAACTATAT 236
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 CAATGCCGGAACCTGTAGGGTGGTTCCGTCTCAATGCGAAAACTACGTTAAAAACTATAT 238
Query 237 CAACGGAGGCCAGTTTGACAAAGATTACGATGTAGTCGCTAGTTACGCCATCGCCTACGC 296
||| | |||||||| |||||| ||||||||||| |||||||||||||||| |||
Sbjct 239 CAAAAGCGGCCAGTTCGACAAAAATTACGATGTACTCGCTAGTTACGCCAT-----ACGG 293
Query 297 TAAAACGATCAATCTTGCCGGCAAA-GAAAAGGACGCGTGGGTCTTTGACATCGATGAGA 355
||||||||||||||||||||| ||| | ||||||| || | | | || ||||| |
Sbjct 294 TAAAACGATCAATCTTGCCGG-AAACGGTAAGGACG--TG--T-TAT-AC---GATGAAA 343
Query 356 CGCTTCTCTCGAATCTTGAGTACTACAAGGCTCATGGTTACGG 398
| || |||||||||||||||||||||||||||||||||||||
Sbjct 344 CT-TT-TCTCGAATCTTGAGTACTACAAGGCTCATGGTTACGG 384
> AT4G29260.1 | Symbols: | HAD superfamily, subfamily IIIB acid
phosphatase | chr4:14422152-14423603 REVERSE LENGTH=1120
Length=1120
Score = 405 bits (219), Expect = 3e-112
Identities = 391/472 (83%), Gaps = 20/472 (4%)
Strand=Plus/Plus
Query 325 AAGGACGCGTGGGTCTTTGACATCGATGAGACGCTTCTCTCGAATCTTGAGTACTACAAG 384
||||||| |||| |||| || ||||| |||||||||||| ||||| |||| |||||||||
Sbjct 501 AAGGACGTGTGGATCTTCGATATCGACGAGACGCTTCTCACGAATATTGACTACTACAAG 560
Query 385 GCTCATGGTTACGGGTCTCAACCGTACGACAATACTTTGTTCAATGAGTGGGTGGTAA-A 443
|||||||||||||||||| ||||||| ||| ||| | || | ||||||||||| || |
Sbjct 561 GCTCATGGTTACGGGTCTGAACCGTATGACGATAATAAATTTAGTGAGTGGGTGG-AACA 619
Query 444 AGGAAAAGCCCCAGGTTTTGATGCGAGCTTGAGGCTCTTCAAAGCTCTCAAGAAACTTGG 503
||||| ||| |||| |||||||||||||||||| || | ||| |||||||||||||||||
Sbjct 620 AGGAACAGCTCCAGCTTTTGATGCGAGCTTGAGACTGTACAATGCTCTCAAGAAACTTGG 679
Query 504 TTTCACTATCATTCTCCTAACCGGCCGAGATGA-AAGTCAAAGGAGTAT-CACCGAGAAA 561
||||||||||||| | |||||||| || || || | |||||||| | | |||||||| |
Sbjct 680 TTTCACTATCATTTTGCTAACCGGTCGGGACGAGCA-TCAAAGGACT-TCCACCGAGACA 737
Query 562 AATCTCCGCGACGCCGGTTATTTCGGTT-GGAACCGACTCCTCTTGAGGGGT-CATGAA- 618
|||||||| || |||||||||| ||||| |||| || ||||||||||| ||| || ||
Sbjct 738 AATCTCCGGGATGCCGGTTATTCCGGTTGGGAA-CGTCTCCTCTTGAGAGGTCCA--AAT 794
Query 619 GATCAAGGAAAAG-CAGCAACACGGTACAAATCAGAGCAGAGAGCAAAAGTGGTCAAAGA 677
|||||||| ||| |||| ||| |||||||| |||||| || | ||| || | | ||
Sbjct 795 GATCAAGG-GAAGTCAGCTACAAATTACAAATCCGAGCAGCGATCGAAACTGATTGAGGA 853
Query 678 AGGCTACACAATCCATGG-AAGT-GCTGGCGATCAATGGAGTGACTTGCAAGGTTTTGCC 735
||| | || ||||| ||| || | || || ||||||||||||||||||||||||||||||
Sbjct 854 AGGTTTCAAAATCCGTGGCAA-TAGC-GGTGATCAATGGAGTGACTTGCAAGGTTTTGCC 911
Query 736 GTGGCC-ACTCGTTCCTTCAAAGTCCCAAATCCGATGTACTATATTGCTTGA 786
||||| | |||||| ||||||||||||||||| |||||||| ||| |||||
Sbjct 912 GTGGCTGA-TCGTTCTTTCAAAGTCCCAAATCCCATGTACTACATTCCTTGA 962
> AT4G29281.1 | Symbols: | Pseudogene of AT4G29270; acid phosphatase
class B family protein | chr4:14429177-14429548 REVERSE
LENGTH=372
Length=372
Score = 220 bits (119), Expect = 1e-56
Identities = 187/218 (86%), Gaps = 12/218 (6%)
Strand=Plus/Plus
Query 189 CTGGAGGGTGGTTCCGTCTCAATGCGAAAACTACGTTAAAAACTATATCAACGGAGGCCA 248
|||||| |||||||||||||||||||||||||||||| | |||||||||| ||||| |
Sbjct 153 CTGGAGATTGGTTCCGTCTCAATGCGAAAACTACGTTAGATACTATATCAAATGAGGCTA 212
Query 249 GTTTGACAAAGATTA-----CGATGTAGTCGCTAGTTACGCCATCGCCTACGCTAAAACG 303
||| ||||||||||| ||||||| |||||||||||||||| ||| |||||||
Sbjct 213 GTTCGACAAAGATTATATTACGATGTACTCGCTAGTTACGCCAT-----ACGGTAAAACG 267
Query 304 ATCAATCTTGCCGGCAAA-GAAAAGGACGCGTGGGTCTTTGACATCGATGAGACGCTTCT 362
|||||||||||||| ||| | | |||||||||||| ||||| |||||||| || ||||
Sbjct 268 ATCAATCTTGCCGG-AAACGGTACGGACGCGTGGGTGTTTGATATCGATGAAACTTTTCT 326
Query 363 CTCGAATCTTGAGTACTACAAGGCTCATGGTTACGGGT 400
||||||| ||||||||||||||||||||||||||||||
Sbjct 327 CTCGAATATTGAGTACTACAAGGCTCATGGTTACGGGT 364
Score = 191 bits (103), Expect = 1e-47
Identities = 144/164 (88%), Gaps = 2/164 (1%)
Strand=Plus/Plus
Query 1 ATGACGTTTTCTCGTAGCAGCTCGATTTCCTTCTTCATCCTTGCTTTATTCGGCGTCTTA 60
||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||| |
Sbjct 1 ATGACGTTTTCTCGTAGCAGCTCGATTTCCTTCTTCATCCTCACTTTATTCGCCATCTAA 60
Query 61 ATTCATCCGGCGATCTCTTCTCGCGTCTCCAC-CTTCATCAAGCTCCCGAGCTCCGTCGA 119
||| |||| | |||||||| |||||||| | ||||||||| ||||| ||||| |||||
Sbjct 61 ATTAATCCTACTATCTCTTCACGCGTCTC-ATGCTTCATCAATCTCCCCAGCTCAGTCGA 119
Query 120 ATCTCGCTCTTCCGACGTTTCCTACTGCGAGGGCTGGAGATTGG 163
|||||||| ||||| |||||||||||| |||||||||||||||
Sbjct 120 ATCTCGCTTTTCCGTTGTTTCCTACTGCAAGGGCTGGAGATTGG 163
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38228185867
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5