BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg889208
Length=771
Score E
Sequences producing significant alignments: (Bits) Value
AT4G29270.1 | Symbols: | HAD superfamily, subfamily IIIB acid ... 981 0.0
AT4G29260.1 | Symbols: | HAD superfamily, subfamily IIIB acid ... 449 1e-125
AT4G29276.1 | Symbols: | Pseudogene of AT4G29270; acid phospha... 254 1e-66
AT4G29281.1 | Symbols: | Pseudogene of AT4G29270; acid phospha... 178 7e-44
> AT4G29270.1 | Symbols: | HAD superfamily, subfamily IIIB acid
phosphatase | chr4:14423662-14424882 REVERSE LENGTH=940
Length=940
Score = 981 bits (531), Expect = 0.0
Identities = 695/775 (90%), Gaps = 8/775 (1%)
Strand=Plus/Plus
Query 1 ATGACGTTTTCTCGTAGCAGCTCGATTACGTTCTTCATTC-TAGCTTTATTCGCCGTCTT 59
||||| ||||||||||||||||||||||||||||||| || | ||||||||| |||||||
Sbjct 35 ATGACTTTTTCTCGTAGCAGCTCGATTACGTTCTTCA-TCGTTGCTTTATTCACCGTCTT 93
Query 60 AATTAATCCGGCGATCTCTTCTCGCGCCTCATCCTTCACCAAGCCGCCTCTTTCTTCTAT 119
|||||||||||||||||||||||||||| | ||||||| ||||| ||||| ||||| ||
Sbjct 94 AATTAATCCGGCGATCTCTTCTCGCGCCGCGTCCTTCATCAAGCTGCCTCGGTCTTCCAT 153
Query 120 CGCTTCATACTGCGAGAGTTGGAGATTAGCCGCCGAGACCAACAATGCTGGAACTTGGAA 179
||||||||||||||||||||||||||||||||| ||||||||||||| |||| | |||||
Sbjct 154 CGCTTCATACTGCGAGAGTTGGAGATTAGCCGCTGAGACCAACAATGTTGGACCCTGGAA 213
Query 180 GGTGGTTCCGTCCCAATGCGAAAACTACGTTAAAAACTATATCAGCGAAGGGCAGTTCGA 239
|||| |||||||||||||||||||||| |||||||||| |||| || ||| ||||||||
Sbjct 214 GGTGATTCCGTCCCAATGCGAAAACTATATTAAAAACTACATCAACGGAGGCCAGTTCGA 273
Query 240 CAAAGATTACGATCTAGTTGCTAGTTACGCTATCGCCTACGCTAAAACGGTCAAGCTTGG 299
|||||| |||||| |||| ||||||||||| || | ||||||||||||||||||| ||||
Sbjct 274 CAAAGACTACGATGTAGTCGCTAGTTACGCCATTGACTACGCTAAAACGGTCAAGGTTGG 333
Query 300 CCGAGACGGCAAGGACGCGTGGGTCTTTGACATCGATGAGACGCTTCTCTCCAATATTGA 359
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 334 CGGAGACGGCAAGGACGCGTGGGTCTTTGACATCGATGAGACGCTTCTCTCCAATATTGA 393
Query 360 GTACTACAAGGCTCATGGTTACGGGTCTCAACCTTATGATAATACTCTATTCAATGAG-T 418
||||||||||||| |||||||||||||| |||| || |||| || | || ||||||| |
Sbjct 394 GTACTACAAGGCTAATGGTTACGGGTCTGAACCGTACGATAGTATTAAATACAATGAGGT 453
Query 419 GGGTGGTAAAAGGAACAGCCCCAGGGTT-TGATGCGAGCTTGAGACTCTACAATGCCCTC 477
|| ||| |||||||| || |||||| || ||||||||||||||| |||||||| || |||
Sbjct 454 GG-TGGAAAAAGGAAAAGACCCAGG-TTATGATGCGAGCTTGAGGCTCTACAAAGCTCTC 511
Query 478 AAGAAACTTGGTTTCACTATCATTTTACTAACCGGCCGAGATGAAAGTCAGAGAAGTATA 537
|||||||||||||||||||||||||||||||| |||||||| ||| |||| |||||| |
Sbjct 512 AAGAAACTTGGTTTCACTATCATTTTACTAACTGGCCGAGACGAAGGTCATAGAAGTGTC 571
Query 538 ACCGAGAAAAATCTTCGGGACGCCGGTTATTTCGGTTGGAACCGACTCCTCTTGAGGGGT 597
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 572 ACCGAGAAAAATCTTCGGGATGCCGGTTATTTCGGTTGGAACCGACTCCTCTTGAGGGGT 631
Query 598 AAAAATGATCAAGG-AAAAGTAGCAACATTGTACAAATCAGAGCAAAGATCAAAAGTGGT 656
||||||||||||| |||| ||||||| |||||||||||||| ||||| |||| ||
Sbjct 632 CAAAATGATCAAGGGAAAAC-AGCAACACAATACAAATCAGAGCAGCGATCACAAGTTGT 690
Query 657 TAAAGAAGGCTACACAATCCATGGAAATACCGGCGATCAATGGAGTGACTTGCAAGGTTT 716
||||||||||||||||||||||| ||||| || ||||||||||||||||||| ||||||
Sbjct 691 AAAAGAAGGCTACACAATCCATGGTAATACTGGAGATCAATGGAGTGACTTGCTAGGTTT 750
Query 717 TGCCGTGGCAGCTCGTTCCTTCAAAGTTCCTAATCCCATGTACTATATTCCTTGA 771
||||||||| ||||||| |||||||| || ||||||||||||||| || |||||
Sbjct 751 TGCCGTGGCTTCTCGTTCTTTCAAAGTCCCAAATCCCATGTACTATGTTGCTTGA 805
> AT4G29260.1 | Symbols: | HAD superfamily, subfamily IIIB acid
phosphatase | chr4:14422152-14423603 REVERSE LENGTH=1120
Length=1120
Score = 449 bits (243), Expect = 1e-125
Identities = 399/474 (84%), Gaps = 12/474 (3%)
Strand=Plus/Plus
Query 304 GACGGCAAGGACGCGTGGGTCTTTGACATCGATGAGACGCTTCTCTCCAATATTGAGTAC 363
||||||||||||| |||| |||| || ||||| |||||||||||| | |||||||| |||
Sbjct 495 GACGGCAAGGACGTGTGGATCTTCGATATCGACGAGACGCTTCTCACGAATATTGACTAC 554
Query 364 TACAAGGCTCATGGTTACGGGTCTCAACCTTATGATAATACTCTATTCAATGAGTGGGTG 423
|||||||||||||||||||||||| |||| ||||| ||| | ||| | ||||||||||
Sbjct 555 TACAAGGCTCATGGTTACGGGTCTGAACCGTATGACGATAATAAATTTAGTGAGTGGGTG 614
Query 424 GTAA-AAGGAACAGCCCCAGGGTTTGATGCGAGCTTGAGACTCTACAATGCCCTCAAGAA 482
| || |||||||||| |||| |||||||||||||||||||| |||||||| ||||||||
Sbjct 615 G-AACAAGGAACAGCTCCAGCTTTTGATGCGAGCTTGAGACTGTACAATGCTCTCAAGAA 673
Query 483 ACTTGGTTTCACTATCATTTTACTAACCGGCCGAGATGA-AAGTCAGAGAAGTAT-AACC 540
||||||||||||||||||||| |||||||| || || || | ||| || | | | |||
Sbjct 674 ACTTGGTTTCACTATCATTTTGCTAACCGGTCGGGACGAGCA-TCAAAGGACT-TCCACC 731
Query 541 GAGAAAAATCTTCGGGACGCCGGTTATTTCGGTT-GGAACCGACTCCTCTTGAGGGGTAA 599
|||| |||||| ||||| |||||||||| ||||| |||| || ||||||||||| |||
Sbjct 732 GAGACAAATCTCCGGGATGCCGGTTATTCCGGTTGGGAA-CGTCTCCTCTTGAGAGGTCC 790
Query 600 AAATGATCAAGGAAAAGT-AGCAAC-ATTGTACAAATCAGAGCAAAGATCAAAAGTGGTT 657
|||||||||||| |||| ||| || | | |||||||| ||||| |||| ||| || ||
Sbjct 791 AAATGATCAAGG-GAAGTCAGCTACAAAT-TACAAATCCGAGCAGCGATCGAAACTGATT 848
Query 658 AAAGAAGGCTACACAATCCATGGAAATACCGGCGATCAATGGAGTGACTTGCAAGGTTTT 717
| ||||| | || ||||| ||| |||| ||| |||||||||||||||||||||||||||
Sbjct 849 GAGGAAGGTTTCAAAATCCGTGGCAATAGCGGTGATCAATGGAGTGACTTGCAAGGTTTT 908
Query 718 GCCGTGGCAGCTCGTTCCTTCAAAGTTCCTAATCCCATGTACTATATTCCTTGA 771
|||||||| | |||||| |||||||| || |||||||||||||| |||||||||
Sbjct 909 GCCGTGGCTGATCGTTCTTTCAAAGTCCCAAATCCCATGTACTACATTCCTTGA 962
> AT4G29276.1 | Symbols: | Pseudogene of AT4G29270; acid phosphatase
class B family protein | chr4:14426790-14427183 REVERSE
LENGTH=394
Length=394
Score = 254 bits (137), Expect = 1e-66
Identities = 324/406 (80%), Gaps = 45/406 (11%)
Strand=Plus/Plus
Query 1 ATGACGTTTTCTCGTAGCAGCTCGAT-TACGTTCTTCATTCT-AGC--TTTATTCGCCGT 56
|||||||||||||||||||||||||| | | |||||||| || | | ||||||||| ||
Sbjct 1 ATGACGTTTTCTCGTAGCAGCTCGATCT-CCTTCTTCATCCTCA-CTTTTTATTCGCTGT 58
Query 57 CTTAATTAATCCGGCGATCTCTTCTCGCGCCTCATCC-T--TC-A---CCA-AG--CCG- 105
| |||||||||| |||||||||| | || ||||||| | || | ||| || |||
Sbjct 59 CATAATTAATCCTACGATCTCTTCACACGTCTCATCCTTCATCAAGCTCCAGAGCTCCGA 118
Query 106 C----CTCTTTCTTCTATCGCTTCATACTGCGAGAGTTGGAGATTAG-CCGCCGAGACCA 160
| ||| ||||| ||||||| ||||||||| | |||||||| | ||||||||||||
Sbjct 119 CGAATCTCGCTCTTCCGTCGCTTCCTACTGCGAGGGCTGGAGATT-GACCGCCGAGACCA 177
Query 161 ACAATGCTGGAACTTGGAAGGTGGTTCCGTCCCAATGCGAAAACTACGTTAAAAACTATA 220
||||||| ||||| || | |||||||||||| ||||||||||||||||||||||||||||
Sbjct 178 ACAATGCCGGAACCTGTAGGGTGGTTCCGTCTCAATGCGAAAACTACGTTAAAAACTATA 237
Query 221 TCAGCGAAG-GGC-AGTTCGACAAAGATTACGATCTAGTTGCTAGTTACGCTATCGCCTA 278
||| ||| ||| ||||||||||| |||||||| || | ||||||||||| || |
Sbjct 238 TCAA--AAGCGGCCAGTTCGACAAAAATTACGATGTACTCGCTAGTTACGCCAT-----A 290
Query 279 CGCTAAAACGGTCAAGCTTGGCCG-AGACGGCAAGGACGCGTGGGTCTTTGACATCGATG 337
|| ||||||| |||| |||| ||| | |||| ||||||| || | | | || ||||
Sbjct 291 CGGTAAAACGATCAATCTTG-CCGGAAACGGTAAGGACG--TG--T-TAT-AC---GATG 340
Query 338 AGACGCTTCTCTCCAATATTGAGTACTACAAGGCTCATGGTTACGG 383
| || || |||| ||| ||||||||||||||||||||||||||||
Sbjct 341 AAACT-TT-TCTCGAATCTTGAGTACTACAAGGCTCATGGTTACGG 384
> AT4G29281.1 | Symbols: | Pseudogene of AT4G29270; acid phosphatase
class B family protein | chr4:14429177-14429548 REVERSE
LENGTH=372
Length=372
Score = 178 bits (96), Expect = 7e-44
Identities = 175/211 (83%), Gaps = 14/211 (7%)
Strand=Plus/Plus
Query 182 TGGTTCCGTCCCAATGCGAAAACTACGTTAAAAACTATATC-AGCGAAGGGC-AGTTCGA 239
|||||||||| ||||||||||||||||||| | |||||||| | | | ||| |||||||
Sbjct 161 TGGTTCCGTCTCAATGCGAAAACTACGTTAGATACTATATCAAATG-A-GGCTAGTTCGA 218
Query 240 CAAAGATTACGATCTA-G-T-TGCTAGTTACGCTATCGCC-TACGCTAAAACGGTCAAGC 295
||||||||| || || | | | || | || | || |||| |||| ||||||| |||| |
Sbjct 219 CAAAGATTA-TAT-TACGATGTACTCGCTA-GTTA-CGCCATACGGTAAAACGATCAATC 274
Query 296 TTGGCC-GAGACGGCAAGGACGCGTGGGTCTTTGACATCGATGAGACGCTTCTCTCCAAT 354
|| ||| || |||| | |||||||||||| ||||| |||||||| || ||||||| |||
Sbjct 275 TT-GCCGGAAACGGTACGGACGCGTGGGTGTTTGATATCGATGAAACTTTTCTCTCGAAT 333
Query 355 ATTGAGTACTACAAGGCTCATGGTTACGGGT 385
|||||||||||||||||||||||||||||||
Sbjct 334 ATTGAGTACTACAAGGCTCATGGTTACGGGT 364
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37474673662
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5