BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg889231

Length=246
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G29033.1 | Symbols:  | Defensin-like (DEFL) family protein |...   383    4e-106


> AT4G29033.1 | Symbols:  | Defensin-like (DEFL) family protein 
| chr4:14308967-14309379 REVERSE LENGTH=246
Length=246

 Score =  383 bits (207),  Expect = 4e-106
 Identities = 233/246 (95%), Gaps = 0/246 (0%)
 Strand=Plus/Plus

Query  1    ATGACTTCATCAAGCAAATGTATTTTCTTTGCGTTTTTGTGTTTGGCTGCTCTCTTGACT  60
            ||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||
Sbjct  1    ATGACTTCATCAAGCAAATGTCTTTTCTTTGTGTTCTTGTGTTTGGCTGCTCTCTTGACT  60

Query  61   CCATATCTTGCGGAAGCTGAAGATAGGAGCAAACTGATTCCCATAGGTCCTTGTTCGAAG  120
            ||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||
Sbjct  61   CCATATCTTGCGGAAGCTGAAGATAGGAGTAAACTAATTCCGATAGGTCCTTGTTCGAAG  120

Query  121  ATTCCGAACTGCAACCAAACATGCATTGAATCACAATTTCTAGGCGGAAAATGCATCAAA  180
            ||| |||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct  121  ATTGCGAACTGCAACCAAACATGCATTGAATCACAATTTCTAGGGGGGAAATGCATCAAA  180

Query  181  TGGTATCCGGATTCCACAAAAGAAACATGTGCTTGTTTGGTAAAACCTTCTATAACACCT  240
            |||||||| || |||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct  181  TGGTATCCAGACTCCATAAAAGAAACATGTGCTTGTTTGGTAAAACCTTCTATAACACAT  240

Query  241  GTTTAA  246
            ||||||
Sbjct  241  GTTTAA  246



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11159440278


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5