BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg889287
Length=912
Score E
Sequences producing significant alignments: (Bits) Value
AT4G28500.1 | Symbols: ANAC073, SND2, NAC073 | NAC domain conta... 1454 0.0
> AT4G28500.1 | Symbols: ANAC073, SND2, NAC073 | NAC domain containing
protein 73 | chr4:14082660-14084266 FORWARD LENGTH=1272
Length=1272
Score = 1454 bits (787), Expect = 0.0
Identities = 874/916 (95%), Gaps = 6/916 (1%)
Strand=Plus/Plus
Query 1 ATGACTTGGTGCAATGACCGTAGCGATGTTCAGACCGTTGAAAGAATCATTCCCTCCCCT 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 ATGACTTGGTGCAATGACCGTAGCGATGTTCAGACCGTTGAAAGAATCATTCCCTCCCCG 414
Query 61 CCGGCGCCTGAGTCCCCGGTAGCCTCACTTCCGGTCTCTTGTCACAAAACTTGTCCTTCT 120
|||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 415 GGGGCGGCTGAGTCCCCCGTAGCCTCACTTCCGGTCTCTTGTCACAAAACTTGCCCTTCT 474
Query 121 TGTGGCCATAACTTCAAGTTTCATGAACAGGCGGGGATCCATGACTTGCCGGGACTTCCT 180
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 475 TGTGGCCATAACTTCAAGTTTCACGAACAGGCTGGGATCCATGACTTGCCGGGACTTCCT 534
Query 181 GCTGGAGTGAAATTTGATCCGACGGATCAAGAGGTCTTGGAGCATCTTGAAGGGAAGGTA 240
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 535 GCTGGAGTAAAATTTGATCCGACGGATCAAGAGGTCTTGGAGCATCTTGAAGGCAAGGTA 594
Query 241 AGAGACGACGCAAAAAAGCTTCATCCTCTCATCGATGAGTTTATCCGTACCATCGATGGT 300
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 595 AGAGATGACGCAAAAAAGCTTCATCCTCTCATTGATGAGTTTATCCGTACCATCGATGGT 654
Query 301 GAAAACGGCATCTGTTATACCCATCCTGAGAAATTGCCAGGAGTGAACAAGGACGGGACG 360
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 655 GAAAACGGCATTTGTTATACCCATCCTGAAAAATTGCCAGGAGTGAACAAGGACGGGACG 714
Query 361 GTCCGTCATTTCTTCCACCGACCGTCGAAGGCATATACGACGGGAACAAGAAAGCGACGT 420
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 715 GTGCGTCATTTCTTCCACCGACCGTCGAAGGCATACACGACGGGAACAAGAAAGCGACGT 774
Query 421 AAAGTCCACACTGATTCTGACGTCGGTGGCGAGACACGGTGGCACAAGACCGGAAAAACA 480
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 775 AAAGTCCACACTGATTCTGACGTCGGTGGAGAGACACGGTGGCACAAGACAGGAAAAACA 834
Query 481 CGGCCAGTTCTCGCCGGAGGAAGAGTGAGAGGCTACAAGAAAATCCTAGTGCTCTACACA 540
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 CGGCCAGTTCTTGCTGGAGGAAGAGTGAGAGGCTACAAGAAAATCCTAGTGCTCTACACA 894
Query 541 AACTACGGCAAACaaaaaaaGCCCGAGAAGACTAATTGGGTAATGCATCAATATCATCTT 600
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 895 AACTACGGCAAACAAAAAAAACCCGAGAAGACTAATTGGGTAATGCATCAATATCATCTT 954
Query 601 GGCACAAGCGAAGAAGAGAAAGAAGGCGAGCTCGTCGTCTCCAAAGTCTTCTACCAGACT 660
||||| ||||| |||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 955 GGCACTAGCGAGGAAGAGAAAGAAGGTGAGCTCGTCGTCTCCAAAGTCTTTTACCAGACT 1014
Query 661 CAACCACGCCAATGCGGTGGCT-C--TGC--C-GCAGCCACCGCTAAGGACCGACCTTAC 714
|||||||| ||||||||||||| | ||| | |||||||||||||||||||||||||||
Sbjct 1015 CAACCACGTCAATGCGGTGGCTCCGTTGCTGCTGCAGCCACCGCTAAGGACCGACCTTAC 1074
Query 715 CTCCACGGCCTCGGTGGAGGTGGTGGCCGCCACCTTCATTACCATCTTCATCATAACAAC 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1075 CTCCACGGCCTCGGTGGAGGTGGTGGCCGCCACCTTCATTACCATCTTCATCATAACAAC 1134
Query 775 GGCAACGGTAAGAGCAACAACGGTGGAGGATCTGCCGGAGCCGGTGAGTATTATCACAAT 834
|| ||||||||||||||| | |||| ||| | |||||||||||||||||||||||||||
Sbjct 1135 GGTAACGGTAAGAGCAACGGCAGTGGGGGAACCGCCGGAGCCGGTGAGTATTATCACAAT 1194
Query 835 ATTCCGGCTCTTATCTCGTTTAATCAGACCGGGATACAGAACCATTTGGTTCATGACTCT 894
||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 1195 ATTCCGGCTATTATCTCGTTCAATCAGACCGGGATACAGAACCACTTGGTTCATGACTCT 1254
Query 895 CAACCTTTTATCCCTT 910
||||||||||||||||
Sbjct 1255 CAACCTTTTATCCCTT 1270
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44557688389
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5