BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg889289
Length=603
Score E
Sequences producing significant alignments: (Bits) Value
AT4G28485.1 | Symbols: DMP7, AtDMP7 | DUF679 domain membrane pr... 640 0.0
> AT4G28485.1 | Symbols: DMP7, AtDMP7 | DUF679 domain membrane
protein 7 | chr4:14075235-14076011 REVERSE LENGTH=584
Length=584
Score = 640 bits (346), Expect = 0.0
Identities = 400/425 (94%), Gaps = 7/425 (2%)
Strand=Plus/Plus
Query 179 GTCAGTGTCCCACCATCACCAGTCGATGGCTCACCTGCTTCCTCGTCTCCCTATGCGCCA 238
||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 79 GTCAGTGTCCCACCATCACCAGTCGCTGGCTCACCTGCTTCCTCGTCTCCTTATGCGCCA 138
Query 239 TCTCTTGCTTCCTCTTCTCCTTTACCGACTCCATCAGAGACCCAAACGGCAAGGTTAGGT 298
|||| ||||||||||||||||||||||||||||| ||||||||||||||| | ||||
Sbjct 139 TCTCCTGCTTCCTCTTCTCCTTTACCGACTCCATTAGAGACCCAAACGGC-A----AGGT 193
Query 299 ACGGATTGGCAACGTGGAGTGGGCTATGT-GTGATAGATGGATCGATTACTCTAACGGAG 357
|||| |||||||||||||||||||||| | ||||| ||||||||||||||| ||||||||
Sbjct 194 ACGGGTTGGCAACGTGGAGTGGGCTAT-TAGTGATGGATGGATCGATTACTTTAACGGAG 252
Query 358 GAGGAGAGGGAAAAGTATAAGCTCAAGATTCTTGATTTTGTGCACGCAATCATGTCAATG 417
||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 253 GAGGAGAAGGAAAAGTATAAGCTCAAGATTCTTGATTTTATTCACGCAATCATGTCAATG 312
Query 418 CTCGTCTTCTTCGCAGTCTCCATGTTTGATCAGAACGTAACCCGTTGTTTATTTCCTGTT 477
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 313 CTCGTCTTCTTCGCAGTCTCCATGTTTGATCAGAACGTAACCCGTTGTTTATTCCCCGTT 372
Query 478 CCTTCCGAGGAAACCAAGGAGATTCTTACCAGTTTACCTTTTATCATCGGCATCATTTGT 537
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 373 CCTTCCGAGGAAACCAAGGAGATTCTTACCAGTTTACCTTTTGTCATCGGCGTCATTTGT 432
Query 538 GGCGCCTTCTTCCTCGCATTCCCCACACGCCGTCATGGCATCGGATCTCCCCTTACCAAA 597
|| ||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 433 GGTGCCTTCTTCCTAGCGTTCCCTACACGCCGTCATGGCATCGGATCTCCCCTTACCAAA 492
Query 598 GAATA 602
|||||
Sbjct 493 GAATA 497
Score = 143 bits (77), Expect = 2e-33
Identities = 79/80 (99%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 1 ATGGAGGAGACGAAGCAGTCATTGATAGCATCGTTGCCGGCGGCACCAAGAAAACCAAAG 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1 ATGGAGGAGACGAAGCAGTCATTGATAGCATCGTTGCCGTCGGCACCAAGAAAACCAAAG 60
Query 61 TCGAAAGTAGAGAGAGTTGT 80
||||||||||||||||||||
Sbjct 61 TCGAAAGTAGAGAGAGTTGT 80
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29035336966
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5