BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg889298

Length=336
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G28397.1 | Symbols:  | FUNCTIONS IN: molecular_function unkn...   521    1e-147


> AT4G28397.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown; 
INVOLVED IN: biological_process unknown; LOCATED IN: 
cellular_component unknown; BEST Arabidopsis thaliana protein 
match is: Bifunctional inhibitor/lipid-transfer protein/seed 
storage 2S albumin superfamily protein (TAIR:AT4G28395.1); 
Has 46 Blast hits to 46 proteins in 4 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 46; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:14045924-14046689 
FORWARD LENGTH=659
Length=659

 Score =  521 bits (282),  Expect = 1e-147
 Identities = 320/338 (95%), Gaps = 4/338 (1%)
 Strand=Plus/Plus

Query  1    ATGCATCGCGCTCTATTGCTTATGACACTAATCACGTCCGCGGTTTCCATGAGTGAAGAA  60
            |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  85   ATGCATCGTGCTCTATTGCTTATGACACTGATCACGTCCGCGGTTTCCATGAGTGAAGAA  144

Query  61   GAGCATTGCAGGGACATGTTCGAGAGCTTTATTAAAGGAATATCTCTGGAACCTTCTCCA  120
            ||||||||||||||||||||||||||||||||||||||| ||||| || ||||  |||||
Sbjct  145  GAGCATTGCAGGGACATGTTCGAGAGCTTTATTAAAGGACTATCTATGCAACCCCCTCCA  204

Query  121  CAGTATTGTAGAGGAGTGAGCCGCTTTAATAACGTCCTCAAGCTCACGTCTCCAATTACT  180
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  205  CAGTATTGTAGAGGAGTGAGCCGCTTCAATAACGTCCTCAAGCTCACGTCTCCAATTACT  264

Query  181  TTGCAGGGATTGACGAAGAAAAAGAG-GAA-GGGAAAGATAGGGGGACGGTGTGATTGCC  238
            ||||||| |||||||||||||||| | ||| ||||| |||||||||||||||||||||||
Sbjct  265  TTGCAGGTATTGACGAAGAAAAAG-GTGAATGGGAA-GATAGGGGGACGGTGTGATTGCC  322

Query  239  CGGAATTAGATGTAATTTGGAAAATAAGATGTAAACCTTGCGCACACAGCCCAGACTCGA  298
            ||||||||||| |||||||||||||||||||||||||||||||||| | ||||||| |||
Sbjct  323  CGGAATTAGATATAATTTGGAAAATAAGATGTAAACCTTGCGCACAAAACCCAGACCCGA  382

Query  299  ATGTCACAGAATCTGAATCACAACATGTGTTGATGTGA  336
            |||| |||||||||||||||||||||||||||||||||
Sbjct  383  ATGTAACAGAATCTGAATCACAACATGTGTTGATGTGA  420



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15683537688


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5