BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg889350
Length=549
Score E
Sequences producing significant alignments: (Bits) Value
AT4G27920.1 | Symbols: PYL10, RCAR4 | PYR1-like 10 | chr4:13901... 761 0.0
> AT4G27920.1 | Symbols: PYL10, RCAR4 | PYR1-like 10 | chr4:13901220-13901970
FORWARD LENGTH=583
Length=583
Score = 761 bits (412), Expect = 0.0
Identities = 503/546 (92%), Gaps = 10/546 (2%)
Strand=Plus/Plus
Query 1 ATGAACGGTGAAGAGACAAAGAAGGTGGAGAGCGAGAACATCAAGAGGCACCATAGACAC 60
||||||||||| || ||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 1 ATGAACGGTGACGAAACAAAGAAGGTGGAGAGCGAGTACATCAAGAAACACCATAGACAC 60
Query 61 GAGCTTGTAGAGAATCAATGTAGCTCTACACTCGTTAAGCACATCAAAGCTCCTCTGCAT 120
|||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 61 GAGCTTGTAGAGTCTCAATGTAGCTCTACGCTCGTTAAGCACATCAAAGCTCCTCTGCAT 120
Query 121 CTCGTGTGGTCACTTGTGAGGAGATTCGATGAACCACAAAAATACAAACCATTTATCAGT 180
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CTCGTGTGGTCAATTGTGAGGAGATTCGATGAACCACAAAAATACAAACCATTTATCAGT 180
Query 181 AGATGTGTTGTAGAAGGGAAGAAGCTGGAAATTGGCA-C-TATACGAGAAGTGGATCTT- 237
|| ||||| ||| |||| ||||||||||| |||| | | || | ||||||||||| ||
Sbjct 181 AGGTGTGTGGTACAAGGTAAGAAGCTGGAGGTTGGTAGCGTA-A-GAGAAGTGGAT-TTG 237
Query 238 AAATCTGGATTACCAGCTACCAAAAGCACTGAGATATTGGAGTTTCTTGACGACAATGAA 297
|||||||||||||||||||| |||||||||||| |||| ||| ||||||||||||||||
Sbjct 238 AAATCTGGATTACCAGCTACTAAAAGCACTGAGGTATTAGAGATTCTTGACGACAATGAG 297
Query 298 CATATTCTCGGCATTAGGATCGTTGGTGGTGATCATAGACTCAAGAACTATTCTTCAACC 357
|||||||||||||| || || |||||||||||||||||||||||||| ||||||||||||
Sbjct 298 CATATTCTCGGCATCAGAATAGTTGGTGGTGATCATAGACTCAAGAATTATTCTTCAACC 357
Query 358 ATTTCGTTGCATTCGGAGACGATACG-CGGGAGAATAGGGACATTGG-TCATAGAATCGT 415
|||||||| ||||||||||||||| | ||| | || ||||||||||| | ||||||||||
Sbjct 358 ATTTCGTTACATTCGGAGACGATA-GACGGAAAAACAGGGACATTGGCT-ATAGAATCGT 415
Query 416 TCGTGGTGGATGTGCCGGAAGGTAACACAAAGGAAGAGACATGCTTCTTCGTGGAGGCTT 475
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 416 TCGTGGTGGATGTGCCGGAAGGTAACACAAAGGAGGAGACATGCTTCTTCGTGGAGGCTT 475
Query 476 TGATTCAATGCAATCTGAATTCTTTAGCAGATGTTTCCGAGCGTCTAGAAGCAGAATCTA 535
|||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 476 TGATTCAATGCAATCTCAATTCTTTAGCAGATGTTACCGAGCGTCTACAAGCAGAATCTA 535
Query 536 TGGAGA 541
||||||
Sbjct 536 TGGAGA 541
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26322693028
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5