BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg889354
Length=984
Score E
Sequences producing significant alignments: (Bits) Value
AT4G27880.1 | Symbols: | Protein with RING/U-box and TRAF-like... 1613 0.0
AT3G61790.1 | Symbols: | Protein with RING/U-box and TRAF-like... 579 2e-164
> AT4G27880.1 | Symbols: | Protein with RING/U-box and TRAF-like
domains | chr4:13883223-13885052 FORWARD LENGTH=1509
Length=1509
Score = 1613 bits (873), Expect = 0.0
Identities = 947/984 (96%), Gaps = 0/984 (0%)
Strand=Plus/Plus
Query 1 ATGGAGACAGATAGTATGGAGTGCGTCTCGTCTACGGGGAATGAGATCCATCAGAACGGT 60
||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||
Sbjct 401 ATGGAGACAGATAGTATGGAGTGCGTCTCATCTACGGGTAATGAGATCCATCAGAATGGT 460
Query 61 AATGGCCACCAATCTTACCAATTCTCTTCGACGAAGACTCACGGCGGTGCAGCAGCGGCC 120
||||||||||||||||||||||||||||||||||||||||||||||| || || || |||
Sbjct 461 AATGGCCACCAATCTTACCAATTCTCTTCGACGAAGACTCACGGCGGAGCCGCTGCTGCC 520
Query 121 GCCGTCGTTACCAATATTGTCGGTCCGACGGCAACTGCTCCGGCCACTAGCGTATATGAG 180
|||||||||||||||||||| || || || ||||||||||||||||||||||| ||||||
Sbjct 521 GCCGTCGTTACCAATATTGTTGGCCCAACAGCAACTGCTCCGGCCACTAGCGTGTATGAG 580
Query 181 CTTCTGGAGTGCCCTGTCTGTACCTATTCTATGTATCCTCCTATCCATCAGTGTCATAAT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 581 CTTCTGGAGTGCCCTGTCTGTACCTATTCTATGTATCCTCCTATCCATCAGTGTCATAAT 640
Query 241 GGACACACATTGTGCTCGACCTGTAAAGTGAGGGTGCATAACAGGTGTCCCACATGTAGA 300
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 641 GGACATACATTGTGCTCGACCTGTAAAGTGAGGGTTCATAACAGGTGTCCCACATGTAGA 700
Query 301 CAAGAACTTGGAGATATTAGATGTTTAGCTCTTGAGAAAGTAGCCGAGTCCCTTGAGCTG 360
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 701 CAAGAACTTGGAGATATTAGATGTTTAGCTCTTGAGAAAGTAGCCGAGTCGCTTGAGCTG 760
Query 361 CCTTGCAAGTATTACAATCTCGGATGCCCTGAGATCTTTCCTTATTACAGCAAACTGAAG 420
|||||||||| ||||||||| ||||| ||||||||||||||||| |||||||||||||||
Sbjct 761 CCTTGCAAGTTTTACAATCTGGGATGTCCTGAGATCTTTCCTTACTACAGCAAACTGAAG 820
Query 421 CACGAGTCTCTCTGTAACTTCAGACCTTACAGTTGTCCTTATGCTGGTTCCGAGTGTGGT 480
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 821 CACGAGTCTCTCTGTAACTTCAGACCTTACAGTTGTCCTTATGCTGGTTCGGAGTGTGGT 880
Query 481 ATCGTAGGGGATATCCCTTTTCTTGTAGCCCATCTCAGGGATGATCACAAAGTTGACATG 540
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 881 ATCGTAGGGGACATCCCTTTTCTTGTAGCCCATCTCAGGGATGATCATAAAGTTGACATG 940
Query 541 CACGCTGGTTCCACTTTTAACCACCGCTACGTCAAATCAAATCCGCGTGAAGTAGAGAAC 600
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 941 CACGCTGGTTCCACTTTTAACCACCGCTATGTCAAATCCAATCCGCGTGAAGTAGAGAAC 1000
Query 601 GCAACTTGGATGCTAACCGTATTCCATTGCTTTGGGCAATACTTCTGCCTCCATTTTGAA 660
|| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 1001 GCTACTTGGATGCTAACCGTATTCCATTGCTTTGGGCAGTACTTCTGCCTCCATTTCGAA 1060
Query 661 GCATTCCAGCTTGGGATGGGTCCGGTATACATGGCCTTCCTGAGATTCATGGGGGACGAG 720
|| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1061 GCGTTCCAGCTTGGGATGGGTCCAGTATACATGGCATTCCTGAGATTCATGGGGGACGAG 1120
Query 721 GAGGACGCACGGAGCTACAGCTACAGCTTAGAAGTGGGAGGCAGTGGAAGGAAGCTAACA 780
|| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1121 GAAGATGCACGGAGCTACAGCTACAGCTTAGAAGTGGGAGGCAGTGGGAGGAAGCTAACA 1180
Query 781 TGGGAAGGAACCCCAAGAAGCATCAGAGATAGCCACAGGAAAGTAAGAGACAGCAACGAC 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1181 TGGGAAGGAACCCCAAGAAGCATCAGAGATAGCCACAGGAAAGTAAGAGACAGCAACGAC 1240
Query 841 GGTCTCATCATCCAAAGAAACATGGCTCTCTTCTTCTCAGGCGGAGACAGGAAAGAGCTT 900
|||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||
Sbjct 1241 GGTCTCATCATCCAAAGAAACATGGCTCTCTTTTTCTCCGGTGGAGACAGGAAAGAGCTT 1300
Query 901 AAACTTAGAGTCACTGGTAAAATCTGGAAAGAGCAACACAGTCCAGATTCTGGACTTTCC 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1301 AAACTTAGAGTCACTGGTAAAATCTGGAAAGAGCAACACAGTCCAGATTCTGGACTTTCC 1360
Query 961 ATACCAAACCTATCATCTTCCTGA 984
|||||||||||||| |||||||||
Sbjct 1361 ATACCAAACCTATCTTCTTCCTGA 1384
> AT3G61790.1 | Symbols: | Protein with RING/U-box and TRAF-like
domains | chr3:22871791-22873786 REVERSE LENGTH=1407
Length=1407
Score = 579 bits (313), Expect = 2e-164
Identities = 625/775 (81%), Gaps = 24/775 (3%)
Strand=Plus/Plus
Query 176 ATGAGCTTCTGGAGTGCCCTGTCTGTACCTATTCTATGTATCCTCCTATCCATCAGTGTC 235
|||||||||| || || |||||||| ||| |||||||||| ||||| || ||||||||||
Sbjct 416 ATGAGCTTCTCGAATGTCCTGTCTGCACCAATTCTATGTACCCTCCCATTCATCAGTGTC 475
Query 236 ATAATGGACACACATTGTGCTCGACCTGTAAAGTGAGGGTGCATAACAGGTGTCCC-ACA 294
| |||||||| || ||||| || |||||||||| ||||| || ||| | || ||| ||
Sbjct 476 ACAATGGACATACGTTGTGTTCAACCTGTAAAGCCAGGGTTCACAACCGCTG-CCCAACT 534
Query 295 TGTAGACAAGAACTTGGAGATATTAGATGTTTAGCTCTTGAGAAAGTAGCCGAGTCCCTT 354
||||||||||| || || ||||| | ||||| || || || ||||||||||| || |||
Sbjct 535 TGTAGACAAGAGCTCGGTGATATCCGTTGTTTGGCACTGGAAAAAGTAGCCGAATCACTT 594
Query 355 GAGCTGCCTTG-CAA-GTAT-TACAATCTCGGATGCCCTGAGATCTTTCCTTATTACAGC 411
|| || ||||| || || | | | || ||||| ||||| ||||| |||||||||||
Sbjct 595 GAACTACCTTGTAAACACATGT-C-A-CTTGGATGTCCTGAAATCTTCCCTTATTACAGT 651
Query 412 AAACTGAAGCACGAGTCTCTCTGTAACTTCAGACCTTACAGTTGTCCTTATGCTGGTTCC 471
|| || || || ||| || | ||||||||||||||||| || || ||||||||||| |||
Sbjct 652 AAGCTCAAACATGAGACTGTATGTAACTTCAGACCTTATAGCTGCCCTTATGCTGGATCC 711
Query 472 GAGTGTGGTATCG-TA-GGG-GATATCCCTTTTCTT-GTAGCCCATCTCAGGGATGATCA 527
|||||| | | | || ||| |||||||| |||||| || || ||||| |||||||||||
Sbjct 712 GAGTGT--TCT-GTTACGGGCGATATCCC-TTTCTTAGTTGCTCATCTGAGGGATGATCA 767
Query 528 CAAAGTTGACATGCACGCTGGTTCCACTTTTAACCACCGCTACGTCAAATCAAATCCGCG 587
|| || || ||||| |||| | ||||| ||||| || || ||||| || ||||| ||
Sbjct 768 TAAGGTGGATATGCATTCTGGGTGTACTTTCAACCATCGTTATGTCAAGTCTAATCCTCG 827
Query 588 TGAAGTAGAGAACGCAACTTGGATGCTAACCGTATTCCATTGCTTTGGGCAATACTTCTG 647
|||||| || ||||| || |||||| |||| || || || ||||| || |||||||||||
Sbjct 828 TGAAGTCGAAAACGCCACATGGATGTTAACTGTCTTTCACTGCTTCGGTCAATACTTCTG 887
Query 648 CCTCCATTTTGAAGCATTCCAGCTTGGGATGGGTCCGGTATACATGGCCTTCCTGAGATT 707
|| || ||||| ||||||||||| || |||| ||| || |||||||| |||||| | ||
Sbjct 888 TCTTCACTTTGAGGCATTCCAGCTCGGAATGGCTCCAGTCTACATGGCGTTCCTGCGTTT 947
Query 708 CATGGGGGACGAGGA-GGACGCACGGAGCTACAGCTACAGCTTAGAAGTGGGAGG-CAGT 765
|||||||||||| || || || || | ||||| ||||| |||||||||||||| | |
Sbjct 948 CATGGGGGACGA-GACAGAAGCTCGAAACTACAATTACAGTTTAGAAGTGGGAGGTTA-T 1005
Query 766 GGAAGGAAGCTAACATGGGAAGGAACCCCAAGAAGCATCAGAGATAGCCACAGGAAAGTA 825
|| ||||||| | |||||||||||| ||||||||| | ||||| ||||||||||||||
Sbjct 1006 GGTCGGAAGCTGATATGGGAAGGAACACCAAGAAGCGTAAGAGACAGCCACAGGAAAGTT 1065
Query 826 AGAGACAG-CAACGACGGTCTCATCATCCAAAGAAACATGGCTCTCTTCTTCTCAGGCGG 884
|||||||| | | || || || || || ||||||||||||||||||||||||||||| ||
Sbjct 1066 AGAGACAGTC-ATGATGGACTAATTATACAAAGAAACATGGCTCTCTTCTTCTCAGGTGG 1124
Query 885 AGACAGGAAAGAGCTTAAACTTAGAGTCACTGGTAAA-ATCTGGAAAGAGCAACA 938
||| ||||||||||| |||||| |||||||||| || || ||||||||||||||
Sbjct 1125 AGATAGGAAAGAGCTGAAACTTCGAGTCACTGG-AAGGATATGGAAAGAGCAACA 1178
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48174546973
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5