BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg889357 Length=1557 Score E Sequences producing significant alignments: (Bits) Value AT4G27850.1 | Symbols: | Glycine-rich protein family | chr4:13... 448 1e-124 AT4G27852.1 | Symbols: | Potential natural antisense gene, loc... 255 7e-67 > AT4G27850.1 | Symbols: | Glycine-rich protein family | chr4:13870382-13873509 FORWARD LENGTH=1734 Length=1734 Score = 448 bits (242), Expect = 1e-124 Identities = 443/537 (82%), Gaps = 26/537 (5%) Strand=Plus/Plus Query 157 GGAACCGAGAGAGAAG-GCACCAACAATAATGAATCTCAAGTTATACATGAG-GTGGCGA 214 |||||||||||||||| | | ||||||||||||||||||| | | | ||| | ||| Sbjct 76 GGAACCGAGAGAGAAGAG-AATAACAATAATGAATCTCAAG-AAGAGACGAGAACGTCGA 133 Query 215 GAAGTCCTAATCATGCTTTGGATGAGATAAAGAAGCAACAGACTCATAATCTCTACTGTC 274 ||||||| ||| | |||||||||||||||| || ||||||||| ||||| |||||||||| Sbjct 134 GAAGTCCCAATGAGGCTTTGGATGAGATAAGGAGGCAACAGACGCATAACCTCTACTGTC 193 Query 275 CTAAATGTAAAAGTAACATCACC-ACAGATGCTGTACTCTTTGTAAAGAATCAAGAAACC 333 |||||||||||| |||||||||| | || |||| |||| |||||||||||||||| ||| Sbjct 194 CTAAATGTAAAACTAACATCACCAAAAG-CGCTGAACTCGTTGTAAAGAATCAAGAGACC 252 Query 334 GATTCGTACAAAACAGAGCCTTACGTACTTTGGGTTCCCCTCGTTATCCCGGCCATCAAG 393 ||||||||||||||| || ||||||||||||||||||||||||||||| || || || || Sbjct 253 GATTCGTACAAAACAAAGGCTTACGTACTTTGGGTTCCCCTCGTTATCTCGCCCTTCGAG 312 Query 394 TTCCCTACCTTTGATCTCTCGTTGTCTTTTCTCGCAGGACCATGGAAGAAACTAAAGACA 453 ||||||||| || |||||| |||||||||||| |||||| ||||||||||||||||||| Sbjct 313 TTCCCTACCCTTCATCTCTTATTGTCTTTTCTCACAGGACTATGGAAGAAACTAAAGACA 372 Query 454 CTTGTCGCAAACTGTTTGCCAAG--TC--TC--AA-TT-CTCCACGTTTGCGGTTCCTAT 505 |||||| ||||||||||| || | || || || || || | | | |||||| |||| Sbjct 373 CTTGTCCCAAACTGTTTGTCACGGCTCAGTCCCAACTTTCTGC-C-TCTGCGGTACCTAC 430 Query 506 TGGTTGCGGTTCTACTATTGCTATCAGTCATTGTTCTGTGGTCCTCTCATCCCCCT-TCG 564 |||||||||||||||||||||||||||||||||| |||||||||||| |||| ||| | | Sbjct 431 TGGTTGCGGTTCTACTATTGCTATCAGTCATTGTCCTGTGGTCCTCTGATCCTCCTCT-G 489 Query 565 CCACCGCCACTGCCACCGCCTCCTTCTCC-TTCGCCAGTGCCGG-T--GCCGCCACCG-C 619 ||||| |||| |||||| |||||| || || |||| ||| | ||| |||| | Sbjct 490 CCACCACCACCGCCACCTTATCCTTCACCATT-GCCACCGCCTCCTTCGCCTTCACCAAC 548 Query 620 -C-AGGACCACCTTCTCCTTCGCCATCGCCAGAGCCTCCTTCTCCTTCGCCAGTGCC 674 | ||| || |||||||| ||||||||||| ||| |||||||| |||| |||| Sbjct 549 ACCAGGGCCGGATTCTCCTTTGCCATCGCCAGGGCCGGATTCTCCTTTGCCACTGCC 605 Score = 255 bits (138), Expect = 7e-67 Identities = 204/235 (87%), Gaps = 8/235 (3%) Strand=Plus/Plus Query 1321 CGACAAGGGACACTACAAAGCTGCGGTTGTTCTCGCTGTATCTTTGGTCTGCGTGATCT- 1379 ||||||||||||||||||||||||||||||||| |||| |||| |||||||||| |||| Sbjct 1500 CGACAAGGGACACTACAAAGCTGCGGTTGTTCTTGCTGCATCTCTGGTCTGCGTCATCTC 1559 Query 1380 TACTCTCCTTTGCCAAAAAGCTTACGCCTTCCGAATGGGAAGAGTCAAGACCGTGGCTGA 1439 | ||||||||||||||| || ||||| ||||| ||| || | ||| |||| ||||||| Sbjct 1560 T-CTCTCCTTTGCCAAA--GCCTACGCTTTCCGCATGCAAAAACTCAGGACCATGGCTGA 1616 Query 1440 ATACACCGGAATGGCGATTGGAGCGTCTGCTCTTT-CTTTCATCGCCAGCCAAATCG-CT 1497 |||||||||||||||| |||| || ||||| |||| | ||||| ||||||| ||||| | Sbjct 1617 ATACACCGGAATGGCGTTTGGGGCATCTGC-CTTTTCATTCATTGCCAGCCGAATCGTC- 1674 Query 1498 AGTGATATCTTTGAAAAGTTAGGCTTTCATGAGCTTGCCTCTGAATACCGAAAAG 1552 |||||||||||||||||||| ||||||||||||||||| |||| |||||||||| Sbjct 1675 AGTGATATCTTTGAAAAGTTTGGCTTTCATGAGCTTGCAGCTGAGTACCGAAAAG 1729 Score = 228 bits (123), Expect = 1e-58 Identities = 137/144 (95%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 1055 TGTGGAAATATATCGTGGTTCAAGTTCAAAACCTCGTACCAAGAGAGCTAGACATCTTGA 1114 ||| ||||||||||||||||| ||||||||||| | |||||||||||||||||||||||| Sbjct 1350 TGTTGAAATATATCGTGGTTCTAGTTCAAAACCACTTACCAAGAGAGCTAGACATCTTGA 1409 Query 1115 AGAGTATTGTTTACGGAGGTCTTATCGAGTCCATCACAAGCCTCGGTGTCGTATCCTCTG 1174 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1410 AGAGTATTGTGTACGGAGGTCTTATCGAGTCCATCACAAGCCTCGGTGTCGTATCCTCCG 1469 Query 1175 CTATCGCTTCCGGAGCTTCAACTC 1198 || ||||||||||||||||||||| Sbjct 1470 CTGTCGCTTCCGGAGCTTCAACTC 1493 Score = 180 bits (97), Expect = 4e-44 Identities = 115/124 (93%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 740 TCATACATTTTCTGAGTATCAAGTACCTTTCCGTATTCTCGTTATTGTTCCTTGCCATTC 799 |||||||||| | |||||||||||||||||| ||||||||| |||||||||||||||||| Sbjct 890 TCATACATTTCCCGAGTATCAAGTACCTTTCTGTATTCTCGCTATTGTTCCTTGCCATTC 949 Query 800 TGACTCTCCCCTGGCCTTCCATTTCCCCTATCATCAATAACCTTATAGCAGCAATTAAAA 859 |||||||||| ||| ||||||||||||| ||| ||||||||||||| ||||||||||||| Sbjct 950 TGACTCTCCCTTGGGCTTCCATTTCCCCCATCTTCAATAACCTTATTGCAGCAATTAAAA 1009 Query 860 CATG 863 |||| Sbjct 1010 CATG 1013 > AT4G27852.1 | Symbols: | Potential natural antisense gene, locus overlaps with AT4G27850 and AT4G27860 | chr4:13872079-13873907 REVERSE LENGTH=1589 Length=1589 Score = 255 bits (138), Expect = 7e-67 Identities = 204/235 (87%), Gaps = 8/235 (3%) Strand=Plus/Minus Query 1321 CGACAAGGGACACTACAAAGCTGCGGTTGTTCTCGCTGTATCTTTGGTCTGCGTGATCT- 1379 ||||||||||||||||||||||||||||||||| |||| |||| |||||||||| |||| Sbjct 393 CGACAAGGGACACTACAAAGCTGCGGTTGTTCTTGCTGCATCTCTGGTCTGCGTCATCTC 334 Query 1380 TACTCTCCTTTGCCAAAAAGCTTACGCCTTCCGAATGGGAAGAGTCAAGACCGTGGCTGA 1439 | ||||||||||||||| || ||||| ||||| ||| || | ||| |||| ||||||| Sbjct 333 T-CTCTCCTTTGCCAAA--GCCTACGCTTTCCGCATGCAAAAACTCAGGACCATGGCTGA 277 Query 1440 ATACACCGGAATGGCGATTGGAGCGTCTGCTCTTT-CTTTCATCGCCAGCCAAATCG-CT 1497 |||||||||||||||| |||| || ||||| |||| | ||||| ||||||| ||||| | Sbjct 276 ATACACCGGAATGGCGTTTGGGGCATCTGC-CTTTTCATTCATTGCCAGCCGAATCGTC- 219 Query 1498 AGTGATATCTTTGAAAAGTTAGGCTTTCATGAGCTTGCCTCTGAATACCGAAAAG 1552 |||||||||||||||||||| ||||||||||||||||| |||| |||||||||| Sbjct 218 AGTGATATCTTTGAAAAGTTTGGCTTTCATGAGCTTGCAGCTGAGTACCGAAAAG 164 Score = 228 bits (123), Expect = 1e-58 Identities = 137/144 (95%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 1055 TGTGGAAATATATCGTGGTTCAAGTTCAAAACCTCGTACCAAGAGAGCTAGACATCTTGA 1114 ||| ||||||||||||||||| ||||||||||| | |||||||||||||||||||||||| Sbjct 1074 TGTTGAAATATATCGTGGTTCTAGTTCAAAACCACTTACCAAGAGAGCTAGACATCTTGA 1015 Query 1115 AGAGTATTGTTTACGGAGGTCTTATCGAGTCCATCACAAGCCTCGGTGTCGTATCCTCTG 1174 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1014 AGAGTATTGTGTACGGAGGTCTTATCGAGTCCATCACAAGCCTCGGTGTCGTATCCTCCG 955 Query 1175 CTATCGCTTCCGGAGCTTCAACTC 1198 || ||||||||||||||||||||| Sbjct 954 CTGTCGCTTCCGGAGCTTCAACTC 931 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 76857034395 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5