BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg889422
Length=795
Score E
Sequences producing significant alignments: (Bits) Value
AT4G27320.1 | Symbols: ATPHOS34, PHOS34 | Adenine nucleotide al... 1317 0.0
AT5G54430.1 | Symbols: ATPHOS32, PHOS32 | Adenine nucleotide al... 582 1e-165
> AT4G27320.1 | Symbols: ATPHOS34, PHOS34 | Adenine nucleotide
alpha hydrolases-like superfamily protein | chr4:13678464-13680924
REVERSE LENGTH=1300
Length=1300
Score = 1317 bits (713), Expect = 0.0
Identities = 755/776 (97%), Gaps = 0/776 (0%)
Strand=Plus/Plus
Query 1 ATGAATCCAGATTCCGATTATCCTCATCTCCCTAACATCAAGATCCACCATCCTTCATCT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 208 ATGAATCCAGATTCCGATTATCCTCATCTCCCTAACATCAAGATCCACCATCCTTCATCT 267
Query 61 CCTCGTCACTCTCACCACCACTCTTCCTCCACTCCTTCCGCCGCTACTCCTACCCCAACC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 268 CCTCGTCACTCTCACCACCACTCTTCCTCCACTCCTTCCGCCGCTACTCCTACCCCAACC 327
Query 121 GCCGGTGCTCGCCGTAAGATCGGAGTCGCCGTTGACCTCTCCGAAGAAAGCGCTTTCGCT 180
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 328 GCCGGTGCTCGCCGTAAGATCGGAGTCGCCGTTGACCTTTCCGAAGAAAGCGCTTTCGCT 387
Query 181 GTTCGCTGGGCTGTCGATCATTACATCCGTCCCGGTGACGCGGTCGTCATTCTCCACGTT 240
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 388 GTTCGCTGGGCTGTCGATCATTACATCCGTCCCGGAGACGCCGTCGTCATTCTCCACGTT 447
Query 241 TCTCCAACCTCCGTTCTCTTCGGCGCCGATTGGGGACCTCTCCCACTCCAAACTCCTCCT 300
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 448 TCTCCAACCTCCGTTCTCTTCGGCGCCGATTGGGGACCTCTCCCTCTCCAAACTCCTCCT 507
Query 301 CCTCCTTCCGCCGCTACCGATCCCGAAGCTCAACCGAAACCTAGTCAGGAAGATTTCGAT 360
||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||
Sbjct 508 CCTCCTTCCGCCGCTACCGATCCCGGAGCTCAGCCGAAGCCTAGTCAGGAAGATTTCGAT 567
Query 361 GCGTTTACTTCTTCCAAAGTAGCGGATCTAGCGAAGCCATTGAAGGAAGCTGGGTTCCCT 420
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 568 GCGTTTACTTCTTCCAAAGTAGCGGATCTAGCGAAGCCGTTGAAGGAAGCTGGGTTTCCT 627
Query 421 CATAAGATCCATATAGTGAAAGATCACGATATGAGAGAGAGGCTTTGTTTAGAGACTGAA 480
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 628 CATAAGATCCATATAGTGAAAGATCACGATATGAGAGAGAGGCTTTGCTTAGAGACTGAA 687
Query 481 CGGCTTAATCTAAGCGCTGTGATAATGGGAAGCAGAGGATTTGGTGCTGAGAAGAGAGGA 540
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 688 AGGCTTAATCTAAGCGCCGTGATAATGGGAAGCAGAGGATTTGGTGCTGAGAAGAGAGGA 747
Query 541 AGTGATGGCAAGCTTGGCTCTGTTAGTGATTATTGTGTTCATCATTGTGTTTGTCCTGTT 600
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 748 AGTGATGGCAAGCTTGGCTCTGTTAGTGATTATTGTGTTCACCATTGTGTTTGTCCTGTT 807
Query 601 GTTGTGGTTAGATATCCTGATGATCGTGATGGTCCTGCTCCTCCTGGGAATGTTGGAGCT 660
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 808 GTTGTTGTTAGATATCCTGATGATCGTGATGGTCCTGCTCCTCCTGGGAATGTTGGAGCT 867
Query 661 ACGAGGGAAGCTATTGTGACTGTTAAATCACGTAGGgatgatgatgatgatgatgatgaa 720
|| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 868 ACCAGGGAAGCTATTGTCACTGTTAAATCACGTAGGGATGATGACGATGATGATGATGAA 927
Query 721 gatgatgaGGCTAAGATTCCTGCTGCTGCTTCTGTTCATCATGAACACATCAAAGA 776
||| |||||||||||||| ||||||||||||| | |||||||||||||||||||||
Sbjct 928 GATCATGAGGCTAAGATTGCTGCTGCTGCTTCCGATCATCATGAACACATCAAAGA 983
> AT5G54430.1 | Symbols: ATPHOS32, PHOS32 | Adenine nucleotide
alpha hydrolases-like superfamily protein | chr5:22097166-22099758
REVERSE LENGTH=1101
Length=1101
Score = 582 bits (315), Expect = 1e-165
Identities = 541/645 (84%), Gaps = 36/645 (6%)
Strand=Plus/Plus
Query 8 CAGATTCCGATTATCCTCATCTCCCTAACATCAAGATCCACCATCCTTCATCTCCTCGTC 67
||||||||||| |||| || || || |||||||||||||| || ||| ||||||| ||||
Sbjct 76 CAGATTCCGATCATCCACAGCTTCCAAACATCAAGATCCATCACCCTCCATCTCCACGTC 135
Query 68 ACTCTCA-C--CACCACTCTTCCTCCACT-CCT--TCCGCCGCTACTCCTACCCCAACCG 121
||||||| | |||||||| || || ||| ||| |||||||| ||||| || |||||||
Sbjct 136 ACTCTCACCATCACCACTCCTCATCTACTCCCTCCTCCGCCGCAACTCCAACACCAACCG 195
Query 122 CCGGTGCTCGCCGTAAGATCGGAGTCGCCGTTGACCTCTCCGAAGAAAGCGCTTTCGCTG 181
|||| ||||| ||||| ||||||||||| ||||| ||||||||||||||| ||||||| |
Sbjct 196 CCGGAGCTCGTCGTAAAATCGGAGTCGCAGTTGATCTCTCCGAAGAAAGCTCTTTCGCCG 255
Query 182 TTCGCTGGGCTGTCGATCATTACATCCGTCCCGGTGACGCGGTCG-TCATTCTCCACGTT 240
|||| |||||||| ||||| |||||||||||||| ||||| || | || |||||||||||
Sbjct 256 TTCGTTGGGCTGTAGATCACTACATCCGTCCCGGAGACGCCGTTGTTC-TTCTCCACGTT 314
Query 241 TCTCCAACCTCCGTTCTCTTCGGCGCCGATTGGGGACCTCTCCCACTCCAAACTCCTCCT 300
|||||||||||||| |||||||| |||||||||||||||||||| || ||| ||
Sbjct 315 TCTCCAACCTCCGTCCTCTTCGGTGCCGATTGGGGACCTCTCCCTCT-GAAA-----ACT 368
Query 301 CCTCCTTCCGCCGCTACCGATCCCGAA-GCTCAACCGAAACCTAGTCAGGAAGATTTCGA 359
| || | | ||| || || |||||||| |||||||||| || ||||| ||
Sbjct 369 -CAAATT-----G--A-AGAT-CCAAACGCTCAACCTCAACCTAGTCAAGAGGATTTTGA 418
Query 360 TGCGTTTACTTCTTCCAAAGTAGCGGATCTAGCGAAGCCATTGAAGGAAGCT-GGGTTCC 418
||| |||||||| | ||||| ||||||||||| || || ||||||| || | ||||| |
Sbjct 419 TGCTTTTACTTCAACAAAAGTTGCGGATCTAGCTAAACCGTTGAAGG-AGTTAGGGTTTC 477
Query 419 CTCATAAGATCCATATAGTGAAAGATCACGATATGAGAGAGAGGCTT-TGT-TTAGAGAC 476
|| ||||||||||||||||||||||||| ||||||||||||| | || ||| || ||||
Sbjct 478 CTTATAAGATCCATATAGTGAAAGATCATGATATGAGAGAGA-GATTATGTCTT-GAGAT 535
Query 477 TGA-ACGGCTTAATCTAAGCGCTGTGATAATGGGAAGCAGAGGATTTGGTGCTGAG---A 532
||| | ||||| ||| || |||||||| |||||||| ||||| |||||||||||| |
Sbjct 536 TGAGA-GGCTTGGTCTTAGTGCTGTGATTATGGGAAGTAGAGGTTTTGGTGCTGAGAAAA 594
Query 533 AGAGAGGAAGTGATGGCAAGCTTGGCTCTGTTAGTGATTATTGTGTTCATCATTGTGTTT 592
| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 595 AAAGAGGAAGTGATGGCAAGCTTGGCTCTGTTAGTGATTACTGTGTTCATCACTGTGTTT 654
Query 593 GTCCTGTTGTTGTGGTTAGATATCCTGATGATCGTGATGGTCCTG 637
|||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 655 GTCCTGTTGTTGTGGTTAGATATCCTGATGATCGTGATGGACCTG 699
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38680293190
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5