BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg889426
Length=2352
Score E
Sequences producing significant alignments: (Bits) Value
AT4G27290.1 | Symbols: | S-locus lectin protein kinase family ... 3779 0.0
> AT4G27290.1 | Symbols: | S-locus lectin protein kinase family
protein | chr4:13666281-13669202 FORWARD LENGTH=2352
Length=2352
Score = 3779 bits (2046), Expect = 0.0
Identities = 2253/2355 (96%), Gaps = 6/2355 (0%)
Strand=Plus/Plus
Query 1 ATGGAAGCCACTATTGTGCTTCCTCTGCTTCTCATCTCTCTGTTTTCGACAATTCTTGTG 60
||||||||||||| |||||||| ||||||| ||||||||||||||||||| |||||| ||
Sbjct 1 ATGGAAGCCACTAATGTGCTTCATCTGCTTATCATCTCTCTGTTTTCGACGATTCTTTTG 60
Query 61 GCACAAGCAACTGATATCCTCGCAGCAAATCAGACTCTAAAAGATGGAGACACCATAGTT 120
||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||
Sbjct 61 GCACAAGCAACTGATATCCTCATAGCAAACCAGACTCTAAAAGATGGAGACACCATTGTT 120
Query 121 TCACAAGGTGGTAGCTTCGAGGTTGGTTTTTTCTCTCCAGGAGGATCAAGAAATCGTTAT 180
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCGCAAGGTGGGAGCTTCGAGGTTGGTTTTTTCTCTCCAGGAGGATCAAGAAATCGTTAT 180
Query 181 CTCGGAATTTGGTACAAGAAAATCTCTCTCCAGACAGTTGTTTGGGTCGCTAACAGAGAT 240
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 181 CTCGGAATTTGGTACAAGAAAATCTCTCTCCAGACCGTTGTTTGGGTTGCTAACAGAGAC 240
Query 241 TCTCCTCTCTACGATCTCTCAGGAACCCTAAAAATATCTGGAAATGGGAGCTTATGCATC 300
||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||
Sbjct 241 TCTCCTCTCTACGATCTCTCAGGAACCCTAAAAGTATCTGAAAATGGGAGCTTATGCCTC 300
Query 301 TTCAATGGCCAGAACT-ACCTCATCTGGTCATCATCATCATCACCATCTTCCCAGAAAAC 359
||||||| || ||| | || ||||||||||||||||||| |||||||||||||||||| |
Sbjct 301 TTCAATGACCGGAA-TCACATCATCTGGTCATCATCATCCTCACCATCTTCCCAGAAAGC 359
Query 360 CAGCGTAAGAAACCCAATTGTTCAGATTCTTGATACAAGTAACTTAGTTGTGAGAAACTC 419
|||| |||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 360 CAGCCTAAGAAACCCAATTGTTCAGATTCTTGATACAGGTAATTTAGTTGTGAGAAACTC 419
Query 420 AGGGGATGATCAAGATTACATATGGCAGAGTTTAGATTACCCAGGAGATATGTTTCTTCC 479
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AGGGGATGATCAGGATTACATATGGCAGAGTTTAGATTACCCAGGAGATATGTTTCTTCC 479
Query 480 AGGAATGAAATATGGTATCAATTTTGTAACCGGTATAAACCGGTTTTTGACATCTTGGAG 539
|||||||||||||||| | ||||||||||||||| |||||||||| ||||||||||||||
Sbjct 480 AGGAATGAAATATGGTCTTAATTTTGTAACCGGTTTAAACCGGTTCTTGACATCTTGGAG 539
Query 540 ATCTCTAGACGATCCATCAACTGGTAACTACACGAATAAAATGGATCCAAACGGTGTCCC 599
| | |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 540 AGCAATAGACGATCCATCAACTGGTAACTACACGAATAAAATGGATCCAAACGGTGTTCC 599
Query 600 GCAGTTTTTCCTGAAGAAAAACTCGGTTGATT-ACTTCAGGACTGGTCCATGGAACGGGC 658
||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |
Sbjct 600 GCAGTTTTTCCTGAAGAAAAACTCGGTTG-TTGTCTTCAGGACTGGTCCATGGAACGGTC 658
Query 659 TAAGATTCACCGGTATGCCTAACCTAAAACCTAACCCTATCTATCGGTATGAGTTTGTCT 718
||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 659 TAAGATTCACCGGTATGCCAAACCTAAAACCTAACCCTATCTATCGGTATGAGTATGTCT 718
Query 719 TCACGGAGGAAGAAGTTTACTATACTTACAAGCTTGAAAACCCTTCAGTGCTCACAAGAA 778
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 719 TCACGGAGGAAGAAGTTTACTACACTTACAAGCTTGAAAACCCTTCAGTGCTGACAAGAA 778
Query 779 TGCAGCTGAATCCGAATGGAGCTTTGCAACGTTACACTTGGGTCGATAGCCTTCAAAGTT 838
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 779 TGCAGCTGAATCCGAATGGAGCTTTGCAACGTTACACTTGGGTCGATAACCTTCAAAGTT 838
Query 839 GGAACTTCTACTTATCGGCTATGATGGATAGTTGTGATCTCTACAAGTTGTGTGGCTCTT 898
|||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 839 GGAACTTCTATTTATCGGCTATGATGGATAGTTGTGATCAATACACGTTGTGTGGCTCTT 898
Query 899 ACGGAAGCTGCAACATCAATGAATCTCCGGCTTGTAGGTGTTTAAAAGGTTTTGTTGCTA 958
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 899 ACGGAAGCTGCAACATCAATGAATCTCCCGCTTGTAGGTGTTTAAAAGGGTTTGTTGCTA 958
Query 959 AATCCCCAGAGGCTTGGGTTGCAGGGGATTGGTCAGAAGGGTGTGTTAGGAGAGTGAAAC 1018
|| | ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 959 AAACTCCACAGGCTTGGGTTGCAGGGGATTGGTCCGAAGGGTGTGTTAGGAGAGTGAAAC 1018
Query 1019 TGGATTGTGGTAAAGGAGAAGACGACTTTCTGAAGATTCCAAAGTTGAAATTACCAGATA 1078
||||||||||||||||||| |||| ||||||||||||| |||||||||| ||||||||||
Sbjct 1019 TGGATTGTGGTAAAGGAGAGGACGGCTTTCTGAAGATTTCAAAGTTGAAGTTACCAGATA 1078
Query 1079 CAAGAACATCGTGGTATGATAAGAACATGGATTTGAGTGAATGCAAAAAGGTATGCTTGA 1138
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1079 CAAGAACATCGTGGTATGATAAGAACATGGATTTGAATGAATGCAAAAAGGTATGCTTGA 1138
Query 1139 GAAACTGTACATGCTCGGCTTATTCACCTTTCGACATTAGAGACGGCAGAAAAGGATGTA 1198
||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||
Sbjct 1139 GAAACTGTACATGCTCGGCTTATTCGCCTTTCGACATTAGAGATGGCGGAAAAGGATGTA 1198
Query 1199 TTCTCTGGTTCGGAGATTTGATTGATATAAGAGAGTATAATGAAAACGGACAAGATCTGT 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 TTCTCTGGTTCGGAGATTTGATTGATATAAGAGAGTATAATGAAAACGGACAAGATCTGT 1258
Query 1259 ATGTGAGGCTTGCTTCTTCTGAGATAGAAACTGTGCAGCGCGAATC-TCTCCGTGTTTCA 1317
|||||||||||||||||||||||||||||||| ||||||||||||| || ||||||||||
Sbjct 1259 ATGTGAGGCTTGCTTCTTCTGAGATAGAAACTTTGCAGCGCGAATCATC-CCGTGTTTCA 1317
Query 1318 AGCAGGAAACAAGAGGAAGAAGATCTTGAATTACCATTTCTTGATCTTGACACAATCTCA 1377
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1318 AGCAGGAAACAAGAGGAAGAAGATCTTGAATTACCATTTCTTGATCTTGACACGGTCTCA 1377
Query 1378 GAAGCTACAAGTGGATTCTCTGATGGGAACAAACTTGGACAAGGTGGTTTTGGACCGGTC 1437
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 1378 GAAGCTACAAGTGGATTCTCTGCTGGGAACAAACTTGGACAAGGTGGTTTTGGACCTGTT 1437
Query 1438 TATAAGGGAACATTGGCTTGTGGACAAGAAATTGCTGTAAAAAAGTTATCAAGAACGTCG 1497
|||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||
Sbjct 1438 TATAAGGGAACATTGGCTTGTGGACAAGAAGTTGCTGTAAAAAGGCTATCAAGAACGTCA 1497
Query 1498 AGACAAGGGATAGAAGAATTCAAGAATGAGATCAAGCTGATTGCTAAGCTTCAACACCGG 1557
||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||| |
Sbjct 1498 AGACAAGGGGTAGAAGAATTCAAGAACGAGATCAAGCTGATTGCAAAGCTTCAACACAGA 1557
Query 1558 AATCTTGTGAAGATTCTTGGGTATTGTGTGGAGGAAGATGAACGAATGCTTATCTACGAG 1617
|||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||
Sbjct 1558 AATCTTGTGAAGATTCTTGGATATTGTGTGGACGAAGAAGAACGAATGCTTATCTACGAG 1617
Query 1618 TATCAGCCGAATAAAAGCTTGGATTCTTTCATTTTTGATAAAGAACGACGTAGAGAACTT 1677
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1618 TATCAGCCGAATAAAAGCTTGGATTCTTTCATTTTCGATAAAGAACGACGTAGAGAACTT 1677
Query 1678 GATTGGCCTAAACGAGTGGAAATAATCAAAGGGATTGCTCGCGGAATGTTGTATCTCCAT 1737
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1678 GATTGGCCTAAACGAGTGGAAATAATCAAAGGGATTGCTCGCGGAATGCTGTATCTCCAT 1737
Query 1738 GAAGATTCAAGGCTTCGAATCATCCACCGTGATCTCAAAGCAAGCAATGTGTTGCTTGAT 1797
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1738 GAAGATTCAAGGCTTCGAATCATCCACCGAGATCTCAAAGCAAGCAATGTGTTGCTTGAT 1797
Query 1798 TCTGATATGAATGCGAAAATATCCGATTTTGGATTGGCTAGAACCTTGGGAGGAGATGAA 1857
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1798 TCTGATATGAATGCGAAAATATCGGATTTTGGATTGGCTAGAACCTTGGGAGGAGATGAA 1857
Query 1858 ACTGAAGCAAACACGACCAGAGTGGTTGGAACATATGGATATATGTCGCCGGAGTATCAA 1917
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1858 ACTGAAGCAAACACGACCAGAGTGGTTGGAACATATGGATATATGTCGCCGGAGTATCAA 1917
Query 1918 ATCGACGGGTATTTCTCATTGAAATCCGATGTATTTAGCTTCGGAGTTTTGGTATTAGAG 1977
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1918 ATCGACGGGTATTTCTCATTGAAATCTGATGTATTTAGCTTCGGAGTTTTGGTATTAGAG 1977
Query 1978 ATAGTGACAGGAAGAAGAAACCGCGGATTTCGTAACGAAGAACACAAGCTTAACCTTCTT 2037
|||||| |||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1978 ATAGTGTCAGGAAGAAGAAACCGCGGATTTCGTAATGAAGAACACAAGCTGAACCTTCTT 2037
Query 2038 GGACATGCTTGGAGGCAATTCTTAGAAGATAAGGCATATGAGCTAATCGATGAAGCTGTC 2097
||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2038 GGACACGCTTGGAGGCAATTCTTAGAAGATAAGGCATATGAGATAATCGATGAAGCTGTC 2097
Query 2098 AATGAGTCATGTACCGATATCTCTGAAGTGTTAAGAGTGATACACATTGGTCTATTATGT 2157
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2098 AATGAGTCATGTACCGATATCTCTGAAGTGTTAAGAGTGATACACATTGGTCTGTTATGT 2157
Query 2158 GTACAACAAGATCCGAAAGACAGACCAAACATGTCAGTGGTGGTTTTGATGTTGAGTAGT 2217
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2158 GTACAACAAGATCCTAAAGACAGACCAAACATGTCAGTGGTGGTTTTGATGTTGAGTAGT 2217
Query 2218 GAAATGTTGCTTCTTGATCCGAGGCAGCCCGGtttttttAACGAAAGAAATCTCTTGTTT 2277
|||||||||||||||||||||||||||||||| || ||||||||| ||||||||||||||
Sbjct 2218 GAAATGTTGCTTCTTGATCCGAGGCAGCCCGGGTTCTTTAACGAACGAAATCTCTTGTTT 2277
Query 2278 TCCGACACTGTATCGATTAATCTCGAGATTCCTTCCAATAATTTACAAACCATGAGTGTA 2337
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2278 TCCGACACTGTGTCGATTAATCTCGAGATTCCTTCCAATAATTTTCAAACCATGAGTGTA 2337
Query 2338 ATAGAGCCTAGATAA 2352
||||| ||||| |||
Sbjct 2338 ATAGATCCTAGGTAA 2352
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 116766467670
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5