BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg889429
Length=1065
Score E
Sequences producing significant alignments: (Bits) Value
AT4G27250.1 | Symbols: | NAD(P)-binding Rossmann-fold superfam... 1605 0.0
> AT4G27250.1 | Symbols: | NAD(P)-binding Rossmann-fold superfamily
protein | chr4:13642772-13644425 REVERSE LENGTH=1096
Length=1096
Score = 1605 bits (869), Expect = 0.0
Identities = 995/1057 (94%), Gaps = 4/1057 (0%)
Strand=Plus/Plus
Query 1 ATGGAATTGCAAGGAGTGGAAAGCAAAGCGACGACGTATTGCGTGACGGGTGCAAGTGGA 60
|||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||
Sbjct 1 ATGGAATTGCAAGGAGAGGAAAGCAAAACGGCGACGTATTGCGTGACGGGTGCAAGTGGA 60
Query 61 TACATAGGTTCTTGGTTGGTTAAGTCTCTTCTCGAAGGAGGCTACACAGTCCATGCCACT 120
||||| ||||||||||||||||||||||||||| || |||| ||||||||||||||||||
Sbjct 61 TACATCGGTTCTTGGTTGGTTAAGTCTCTTCTCCAAAGAGGTTACACAGTCCATGCCACT 120
Query 121 CTCAGAGATCTTGGAAAATCTCAATACTTTCAATCTAAATGGAAGGAAAATGAACGGCTT 180
||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 121 CTCAGAGATCTTGCAAAATCTGAATACTTTCAATCTAAATGGAAGGAAAATGAACGGCTC 180
Query 181 AGATTATTCCAAGCGGATCTTCAAGATGACGGCAGCTTCGATGAGGCCTTTAAGGGCTGC 240
|||||||||| ||||||||||| ||||||||||||||| || || ||| ||||||| ||
Sbjct 181 AGATTATTCCGAGCGGATCTTCGAGATGACGGCAGCTTTGACGACGCCGTTAAGGGTTGT 240
Query 241 GACGGCGTCTTCCATGTCGCCGCTTCCATGGAGTTTGATATCTCATCAGATCACGTCAAT 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 241 GACGGCGTCTTCCATGTCGCCGCTTCCATGGAGTTTGATATCTCATCAGATCACGTTAAT 300
Query 301 CTCGAGAGTTATGTCCAGAGCAAAGTCATAGATCCGGCGGTAAAAGGCGTACGGAATGTT 360
|||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 301 CTCGAGAGTTATGTCCAGAGCAAAGTCATAGAACCGGCGCTAAAAGGCGTACGGAATGTA 360
Query 361 CTTGGTTCTTGTCTTAAGTCAAAGTCAGTCAAAAGAGTTGTCTTCACATCATCCATCAGC 420
||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CTTAGTTCTTGTCTAAAGTCAAAGTCAGTCAAAAGAGTTGTCTTCACATCATCCATCAGC 420
Query 421 ACTCTCACTGCCAAAGATGATAATGAACGGATGACATCTTTCGTGGATGAAACTTGCAAG 480
||||||||||| |||||||| ||||||||||||| |||||||||||||||||| ||||||
Sbjct 421 ACTCTCACTGCTAAAGATGAGAATGAACGGATGAGATCTTTCGTGGATGAAACATGCAAG 480
Query 481 GCTCATGTTGATCATGTCATTAAAACACAAGCAAGTGGATGGATTTATGTACTATCGAAG 540
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 481 GCTCATGTTGATCATGTCCTTAAAACACAAGCAAGTGGATGGATTTATGTATTATCGAAG 540
Query 541 CTCGTATCAGAGGAAGAAGCATTTAGATATGCAAAAGAGAGAGGAATGGATCTTGTTTCA 600
|||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||
Sbjct 541 CTCGTATCAGAGGAAGAAGCATTTCGGTATGCGAAAGAGAGAGGAATGGATCTTGTTTCA 600
Query 601 GTCATTACAACTACTGTTTCAGGTCCATTTCTTACTCCTAAT-GTCCCATCAAGCGTTCA 659
||||||||||| ||||||||||||||||| |||||||| | | |||||||||||||||||
Sbjct 601 GTCATTACAACAACTGTTTCAGGTCCATTCCTTACTCC-ATTTGTCCCATCAAGCGTTCA 659
Query 660 AGTTCTCTTATCCCCAATAACAGGTGACTCAAAGTTGTTTCCAATATTATCAGCTGTGAA 719
||||||||| || ||||| ||||||||||||||||||||| | |||||||||||||||||
Sbjct 660 AGTTCTCTTGTCTCCAATTACAGGTGACTCAAAGTTGTTTGCGATATTATCAGCTGTGAA 719
Query 720 CAAAAGAATGGGTTCGATTGCTTTGGTACACATTGAAGATATTTGCAGAGCGCATCTGTT 779
|||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||
Sbjct 720 CAAAAGAATGGGTTCGATTGCTTTAGTACACATTGAAGATATTTGCAGGGCTCATCTGTT 779
Query 780 TTTGATGGAACAGAC-AAAGGCTAAAGGTCAATATATATGTTGTGTTGACAATATTGATA 838
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TTTGATGGAACA-ACCAAAGGCTAAAGGTCAATATATATGTTGTGTTGACAATATTGATA 838
Query 839 TGCATGAATTGATGCTTCATCACTTTTCTAAGAAGTATCTTTGTAAAGTTCTAAAGGTAA 898
||||||| ||||||||||||||||| |||||| | |||||||||||||||| ||||||||
Sbjct 839 TGCATGAGTTGATGCTTCATCACTTCTCTAAGGACTATCTTTGTAAAGTTCAAAAGGTAA 898
Query 899 ATGAAGACGACAAAGACAGACAATGTATGAAGCCTATAATTTCTTCAAAGAAGTTAAGAG 958
|||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 899 ATGAAGACGAGGAAGAGAGAGAATGTATGAAGCCTATAATTTCTTCAAAGAAGTTAAGAG 958
Query 959 AATTGGGTTTTGAGTACAAATATGGTATTGAAGAAATTGTTGATCAGACAATTGATGCTT 1018
||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 959 AATTGGGGTTTGAGTACAAATATGGTATTGAAGAAATTGTTGATCAAACCATTGATGCTT 1018
Query 1019 CTATCAAGTTTAAGTTCCCTACCATGAACCACAAACT 1055
|||||||| |||||||||||||| |||||||||||||
Sbjct 1019 CTATCAAGATTAAGTTCCCTACCTTGAACCACAAACT 1055
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52158366255
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5