BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg889430
Length=1293
Score E
Sequences producing significant alignments: (Bits) Value
AT4G27240.1 | Symbols: | zinc finger (C2H2 type) family protei... 1938 0.0
AT5G54630.1 | Symbols: | zinc finger protein-related | chr5:22... 595 3e-169
> AT4G27240.1 | Symbols: | zinc finger (C2H2 type) family protein
| chr4:13639963-13641792 FORWARD LENGTH=1645
Length=1645
Score = 1938 bits (1049), Expect = 0.0
Identities = 1216/1296 (94%), Gaps = 13/1296 (1%)
Strand=Plus/Plus
Query 1 ATGGAAGCTTCAAGCACaagaagcgagaag-a-aa-aagaagaagacgattcagagagaa 57
|||||||||||||||||||||||||||||| | || |||||||||||||| |||||||||
Sbjct 198 ATGGAAGCTTCAAGCACAAGAAGCGAGAAGAAGAAGAAGAAGAAGACGATACAGAGAGAA 257
Query 58 aataccgatattcagaaa-aacaaaaagCTACCCAGTGTTTGGTTTTCACTGAAGAAATC 116
|| ||||||| ||| ||| || ||||||||||||||||||||||||||||| ||||||||
Sbjct 258 AACACCGATACTCA-AAAGAAAAAAAAGCTACCCAGTGTTTGGTTTTCACTTAAGAAATC 316
Query 117 TCTCCCCTGCAAATCTGATGTCTCCGATGTCCACATTCCGAGATCCAGAAAAGATCTCA- 175
||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |
Sbjct 317 TCTCCCCTGCAAATCTGATGTCTCCGATGTCCACATTCCGAGATCCAAAAAAGAGCT-AG 375
Query 176 CTCCCATATCCACTAAGAGAACAACAACCACCTCCGGAGGAGGAGTCGGTGGCCGGTCCG 235
||||||||||||||||||||||||||||| ||||||| || || ||||| ||| ||||||
Sbjct 376 CTCCCATATCCACTAAGAGAACAACAACCTCCTCCGGCGGCGGGGTCGGCGGCAGGTCCG 435
Query 236 GTTGTTCCCGATCCATAGCCAATCTCAAAGACGTAATCCATGGAAACCAACGGCATTTGG 295
||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 436 GTTGTTCAAGATCCATAGCCAATCTTAAAGACGTAATCCATGGAAACCAACGGCATTTAG 495
Query 296 AGAAGCCGCTTTGCTCTAGCCCTCGTTCTATCGGAAGCAGCGAGTTTCTCAATCCCATTA 355
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 496 AGAAGCCGCTTTGCTCTAGCCCTCGTTCTATAGGAAGCAGCGAGTTTCTCAATCCCATTA 555
Query 356 CTCACGATGTAATCTTTAGCAACTCCACCTGCGAGCTCAAGATCACCGCCGCCGGAGCAA 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 556 CTCACGATGTAATCTTTAGCAACTCCACCTGCGAGCTCAAGATCACCGCCGCCGGAGCAA 615
Query 416 CTGAATTCGTGGGGACTCTGACG-CCAGGGACGCCGGTCAATTACTCTTCTTCACGCCGG 474
| |||||||| |||| ||| | | |||||||||||||||||||||||||||||||||||
Sbjct 616 CAGAATTCGTCGGGAATCTTA-GACCAGGGACGCCGGTCAATTACTCTTCTTCACGCCGT 674
Query 475 AGCCAAGCTTCGAGAAAGGCTTCTTCTTTAGACAGAGAAGGATTAGGGTTTCACCAAAGC 534
|||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 675 AGCCAAACTTCGAGAAAGGCTTCTTCTTTAGATAGAGAAGGATTAGGGTTTCACCAGAGC 734
Query 535 agaagagagaga-gatagagaTTCCGCCATTAATGGAGACAATTCCTCTGTTTCTTGCCA 593
|||||||||| | |||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 735 AGAAGAGAGA-ATGATAGAGAAGCCGCCATTAACGGAGACAATTCCTCTGTTTCTTGCCA 793
Query 594 TAAATGTGGCGAGAAATTTAGCAAACTCGAAGCTGCAGAAGCTCACCATCTCACTAAACA 653
|||||| |||||||||||||||||||||||||||||||||||||| ||||| || |||||
Sbjct 794 TAAATGCGGCGAGAAATTTAGCAAACTCGAAGCTGCAGAAGCTCATCATCTAACCAAACA 853
Query 654 CGCCGTGACTGAGCTCATGGAAGGAGACTCATCGAGGAAAATTGTGGAGATAATCTGCAG 713
||||||||||||||| |||||||||||||| ||||||| ||| |||||||||||||||||
Sbjct 854 CGCCGTGACTGAGCTAATGGAAGGAGACTCGTCGAGGAGAATAGTGGAGATAATCTGCAG 913
Query 714 AACAAGCTGGTTAAAGACAGAGAATCAAGGAGGGAGAATCGATCGGATCTTGAAAGTGCA 773
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 914 AACAAGCTGGTTAAAGACAGAGAATCAAGGAGGGAGAATCGATCGGATTTTGAAAGTACA 973
Query 774 CAACATGCAAAAAACCTTAGCAAGATTCGAAGAATACAGAGATACAGTGAAGATCAGAGC 833
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 974 CAACATGCAAAAAACCTTAGCGAGATTCGAAGAATACAGAGATACAGTGAAGATCAGAGC 1033
Query 834 AAGCAAGCTACAAAAGAAACACCCGAGATGTATCGCCGACGGAAACGAGCTTCTCAGGTT 893
||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1034 AAGCAAGTTACAAAAGAAACATCCGAGATGTATCGCCGACGGAAACGAGCTTCTCAGGTT 1093
Query 894 TCACGGCACCACCGTCGCGTGCGCTTTAGGGATAAACGGGTCGACGAGTCTGTGTTCTTC 953
|||||||||||| || || |||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1094 TCACGGCACCACTGTGGCTTGCGCTTTGGGGATAAACGGGTCGACGAGTCTGTGTTCGTC 1153
Query 954 GGAAAAATGCTGCGTTTGCCGGATTATACGAAACGGGTTCTCGGCGAAACGGGAGATGAA 1013
|||||| || |||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1154 GGAAAAGTGTTGCGTTTGTCGGATTATACGAAATGGGTTCTCGGCGAAACGGGAGATGAA 1213
Query 1014 TAACGGAATTGGGGTTTTTACTGCGTCGACGAGTGAGAGGGCGTTTGAGTCAATTGTGAT 1073
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1214 TAACGGAATTGGGGTTTTTACTGCGTCGACGAGTGAGAGGGCGTTTGAGTCTATTGTGAT 1273
Query 1074 TG-ACGACGGTGGTGGTGGTGATCGGAAGGCGTTGATAGTGTGTCGGGTAATCGCCGGGA 1132
|| | || ||||||||||||||||||||||||||||| |||||||| || || |||||||
Sbjct 1274 TGGA-GATGGTGGTGGTGGTGATCGGAAGGCGTTGATTGTGTGTCGAGTGATTGCCGGGA 1332
Query 1133 GGGTTCATCGGCCGGTGGAGAATTTAGAGGAGATGAGTGGGTTATTGAATGGGTTTGATT 1192
||||||||||||||||||||||| ||||||||||| ||||||| |||| |||||||||||
Sbjct 1333 GGGTTCATCGGCCGGTGGAGAATGTAGAGGAGATGGGTGGGTTGTTGAGTGGGTTTGATT 1392
Query 1193 CGTTGGCCGGTAAAGTTGGGTTGTACACAAATGTTGAGGAGCTTTATTTGCTAAATTCTC 1252
| ||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1393 CATTGGCTGGTAAAGTTGGGTTGTACACAAATGTTGAGGAGCTCTATTTGCTCAATTCTC 1452
Query 1253 GAGCTTTGCTTCCTTGTTTTGTGCTGATTTGCAAAC 1288
||||||||||||||||||||||||| || |||||||
Sbjct 1453 GAGCTTTGCTTCCTTGTTTTGTGCTAATCTGCAAAC 1488
> AT5G54630.1 | Symbols: | zinc finger protein-related | chr5:22192499-22194308
REVERSE LENGTH=1575
Length=1575
Score = 595 bits (322), Expect = 3e-169
Identities = 656/813 (81%), Gaps = 40/813 (5%)
Strand=Plus/Plus
Query 509 GAGAAGGATTAGGGTTTCA-CCAAAGCagaagag----a---gaga-g-atagagaTTCC 558
||||||| ||||||||||| |||| |||||| | | |||| | | ||||| |||
Sbjct 653 GAGAAGGGTTAGGGTTTCATACAAA-CAGAAGGGTTTCATTGGAGATGAACAGAGAATCC 711
Query 559 GCCATTAATGGA-G--ACAATTCCTCTGTTTCTTGCCATAAATGTGGCGAGA-AATTTAG 614
||||||||||| | ||||||||||||||||||| ||||||||||| || | | || |
Sbjct 712 ACCATTAATGGAGGCAACAATTCCTCTGTTTCTTGTCATAAATGTGGTGA-ACAGTTCAA 770
Query 615 CAAACTCGAAGCTGCAGAAGCTCACCATCTCACTAAACACGCCGTGACTGAGCTCATGGA 674
|| || |||||||| |||||||| |||||| ||||||| ||||| || ||||| | ||
Sbjct 771 TAAGCTTGAAGCTGCTGAAGCTCATCATCTCTCTAAACATGCCGTAACGGAGCTTGTAGA 830
Query 675 AGGAGACTCATCGAGGAAAATTGTGGAGATAATCTGCAGAACAAGCTGGTTAAAGACAGA 734
|||||| ||||| || ||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 831 AGGAGATTCATCAAGAAAAATAGTGGAGATAATCTGCAGAACAAGCTGGTTAAAGTCAGA 890
Query 735 GAATCAAGGAGGGAGAATCGATCG-GATCTTGAAAGTGCACAACATGCAAAAAACCTTAG 793
||| ||| | || ||||||||| | | | || ||||| ||||||||||| || || ||||
Sbjct 891 GAACCAATGTGGAAGAATCGATAGAGTT-TTAAAAGTACACAACATGCAGAAGACATTAG 949
Query 794 CAAGATTCGAAGAATACAGAGATACAGTGAAGATCAGAGCAAGCAAGCTACAAAAGAAAC 853
| |||||||| ||||||||||| ||||| || |||||||||||||| || || ||||| |
Sbjct 950 CTAGATTCGAGGAATACAGAGAAACAGTTAAAATCAGAGCAAGCAAACTTCAGAAGAAGC 1009
Query 854 ACCCGAGATGTATCGCCGACGGAAACGAGCTTCTCAGGTTTCACGGCACCACCGTCGCGT 913
| || |||||| |||| ||||| |||||||| || ||||| ||||| |||||||| || |
Sbjct 1010 ATCCAAGATGTCTCGCAGACGGTAACGAGCTACTTAGGTTCCACGGAACCACCGTGGCTT 1069
Query 914 GCGCTTTAGGGATAAACGGGTCGACGAGTCTGTGTTCTTCGGAAAAATGCTGCGTTTGCC 973
| | |||||| ||||||||||| || ||| | || | |||| ||||| || || || |
Sbjct 1070 GTGGTTTAGGTATAAACGGGTCAACAAGTGTTTGCACGGCGGAGAAATGTTGTGTCTGTC 1129
Query 974 GGATTATACGAAACGGGTTCTCGGCGAAACGGGAGATGAATAACGGAATTGGGGTTTTTA 1033
||||||||||||||||||||||| |||||||||||| |||||| || |||| ||||| |
Sbjct 1130 GGATTATACGAAACGGGTTCTCGTCGAAACGGGAGAAGAATAATGGGGTTGGTGTTTTCA 1189
Query 1034 CTGCGTCGACGAGTGAGAGG-GCGTTTGAGTCAATTGTGATTGACGACGG---TG-G--T 1086
| ||||| || |||| || | ||||| ||||| ||| || || ||| || || | |
Sbjct 1190 CGGCGTCTACTAGTG-GAAGAGCGTTCGAGTCGATTTTGGTTAACGGTGGAGATGAGAGT 1248
Query 1087 GGTG--GT-GATCGGA-----AGGC--GT-T-GATAGTGTGTCGGGTAATCGCCGGGAGG 1134
|| | || ||||||| ||| || | ||| |||||| |||| |||||||| ||
Sbjct 1249 GGAGATGTTGATCGGACGGTGAGGAAAGTGTTGATTGTGTGTAGGGTTATCGCCGGAAGA 1308
Query 1135 GTTCATCGGCCGGTGGAGAATTTAGAGGAGATGAGTGGGTT-ATTGAATGGGTTTGATTC 1193
||||||||||||||||||||| | |||||||||| |||||| || || ||||||||||||
Sbjct 1309 GTTCATCGGCCGGTGGAGAATGTGGAGGAGATGAATGGGTTGAT-GAGTGGGTTTGATTC 1367
Query 1194 GTTGGCCGGTAAAGTTGGGTTGTACACAAATGTTGAGGAGCTTTATTTGCTAAATTCTCG 1253
||||| || |||||||| ||||| |||||||| ||||||||||||||||| ||| ||
Sbjct 1368 TTTGGCTGGCAAAGTTGGTTTGTATACAAATGTGGAGGAGCTTTATTTGCTTAATCCTAA 1427
Query 1254 AGCTTTGCTTCCTTGTTTTGTGCTGATTTGCAA 1286
||||||||||||||| |||||| | ||||||||
Sbjct 1428 AGCTTTGCTTCCTTGCTTTGTGGTCATTTGCAA 1460
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63604090515
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5