BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg889435
Length=792
Score E
Sequences producing significant alignments: (Bits) Value
AT4G27140.1 | Symbols: SESA1, AT2S1 | seed storage albumin 1 | ... 442 2e-123
AT1G03970.1 | Symbols: GBF4 | G-box binding factor 4 | chr1:101... 420 1e-116
AT1G03980.1 | Symbols: ATPCS2, PCS2 | phytochelatin synthase 2 ... 420 1e-116
AT4G27160.1 | Symbols: AT2S3, SESA3 | seed storage albumin 3 | ... 379 2e-104
AT4G27170.1 | Symbols: SESA4, AT2S4 | seed storage albumin 4 | ... 374 9e-103
AT4G27150.1 | Symbols: SESA2, AT2S2 | seed storage albumin 2 | ... 257 1e-67
AT5G44080.1 | Symbols: | Basic-leucine zipper (bZIP) transcrip... 220 1e-56
> AT4G27140.1 | Symbols: SESA1, AT2S1 | seed storage albumin 1
| chr4:13607329-13608031 FORWARD LENGTH=703
Length=703
Score = 442 bits (239), Expect = 2e-123
Identities = 426/509 (84%), Gaps = 42/509 (8%)
Strand=Plus/Plus
Query 321 TAGCAAAAAATGGCGAACAAGCTCTTCATCGTCTGCGCATCTCTCGCTCTCTGCTTCCTC 380
|||||||||||||| |||||| | ||| ||||||||||| ||||||||||||||||||||
Sbjct 26 TAGCAAAAAATGGCAAACAAGTTGTTCCTCGTCTGCGCAGCTCTCGCTCTCTGCTTCCTC 85
Query 381 CTCACCAACGCTTCCATCTACCGCA-C-T-G-T-CG-TCG-A-ACTATGACGCCAGC-AA 431
||||||||||||||||||||||||| | | | | | ||| | | ||||||||| | ||
Sbjct 86 CTCACCAACGCTTCCATCTACCGCACCGTCGTTGAGTTCGAAGAAGATGACGCCA-CTAA 144
Query 432 CCCCATAGGCCC-AAGA-CA-GAAATGTCAG-AGGGAGTTTCAGAAAGAACAACACCTTA 487
|||||||||||| || | | |||||| | | | |||||||||||||||||||||||| |
Sbjct 145 CCCCATAGGCCCAAAAATGAGGAAATG-CCGCAAGGAGTTTCAGAAAGAACAACACCTAA 203
Query 488 GAGCTTGCCAGCGATTGATGCGCAAGCAAATGAGACAAGGCCAT-G-G-TG-G--TG--- 538
|||||||||||| |||||||| | ||||| || ||||||| | | | || | ||
Sbjct 204 GAGCTTGCCAGCAATTGATGCTCCAGCAAGCAAGGCAAGGCCGTAGCGATGAGTTTGATT 263
Query 539 --GAAGACGACATCGAGAA-CC-C---G----CAG-A-GACCCTC-GCTACTCCAGAAGT 584
||||||||||| ||||| || | | ||| | || | | |||| ||||| |||
Sbjct 264 TCGAAGACGACATGGAGAACCCACAGGGACAACAGCAGGAACAACAGCTATTCCAGCAGT 323
Query 585 GCTGCAGCGAGCTTCGCCA-GAAGACCCAGATTGCGTTTGCCCCACCTTGAAACAAGCTG 643
|||||| |||||||||||| ||||| |||||||| |||||||||||||||||||||||||
Sbjct 324 GCTGCAACGAGCTTCGCCAGGAAGAGCCAGATTGTGTTTGCCCCACCTTGAAACAAGCTG 383
Query 644 CCAAGGCCGTTAGACTCCAGGGACAGCAGCACCAACCAATGAAAGTCAGGAAAATTTACC 703
|||||||||||||||||||||||||||| | | |||||||| ||||||||||||||||||
Sbjct 384 CCAAGGCCGTTAGACTCCAGGGACAGCA-C-C-AACCAATGCAAGTCAGGAAAATTTACC 440
Query 704 AGACAGCTAAGAACTTGCCTAACATTTGCAAAATCCCGCAAGTTGATGTTTGCCCCTTCC 763
||||||| ||| ||||||| ||| ||||| | |||||||||||||||||||| ||||||
Sbjct 441 AGACAGCCAAGCACTTGCCCAACGTTTGCGACATCCCGCAAGTTGATGTTTGTCCCTTCA 500
Query 764 AGATCCCTTCATTCCCTTCTTACTACTAA 792
| ||||||||||||||||||| |||||||
Sbjct 501 ACATCCCTTCATTCCCTTCTTTCTACTAA 529
> AT1G03970.1 | Symbols: GBF4 | G-box binding factor 4 | chr1:1018100-1019247
FORWARD LENGTH=1148
Length=1148
Score = 420 bits (227), Expect = 1e-116
Identities = 274/296 (93%), Gaps = 5/296 (2%)
Strand=Plus/Plus
Query 12 GCAGCAACACAGTTCGTTTCAGATGATTGAAGGATCAATGGTTggaggaggaggaatgag 71
||||| |||||||||||| |||||| ||||||||||||| | || ||||||| || |||
Sbjct 596 GCAGCGACACAGTTCGTTCCAGATGGTTGAAGGATCAAT-G--GGTGGAGGAGTAACGAG 652
Query 72 aggaaagagagggagagTGATGACGAAGGCAATGGATAAAGCTGCAGCTCAAAGACAGAA 131
||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||
Sbjct 653 AGGAAAGAGAGGGAGAGTGATGATGGAGGCAATGGATAAAGCTGCAGCTCAGAGACAGAA 712
Query 132 GAGGATGATCAAGAACCGTGAATCCGCTGCTAGGTCTCGAGAGAGGAAACAAGCTTATCA 191
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 713 GAGGATGATCAAGAACCGTGAATCCGCTGCTAGGTCTCGAGAGAGGAAACAGGCTTATCA 772
Query 192 AGTTGAGTTAGAGACTTTGGCTGCGAAATTAGAGGAAGG-GAATGAGAAGCTTTTGAAGG 250
||||||||||||||||||||||| || |||||||| || ||||||| ||||||||||||
Sbjct 773 GGTTGAGTTAGAGACTTTGGCTGCCAAGTTAGAGGA-GGAGAATGAGCAGCTTTTGAAGG 831
Query 251 AGATTGAAGAGAGCACTAAAGAGAGATTCAAGAAGCTCATGGACGTTTTGATTCCG 306
||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||
Sbjct 832 AGATTGAAGAGAGCACTAAAGAGAGATACAAGAAGCTCATGGAGGTTCTGATTCCG 887
> AT1G03980.1 | Symbols: ATPCS2, PCS2 | phytochelatin synthase
2 | chr1:1018570-1022108 REVERSE LENGTH=2337
Length=2337
Score = 420 bits (227), Expect = 1e-116
Identities = 274/296 (93%), Gaps = 5/296 (2%)
Strand=Plus/Minus
Query 12 GCAGCAACACAGTTCGTTTCAGATGATTGAAGGATCAATGGTTggaggaggaggaatgag 71
||||| |||||||||||| |||||| ||||||||||||| | || ||||||| || |||
Sbjct 2212 GCAGCGACACAGTTCGTTCCAGATGGTTGAAGGATCAAT-G--GGTGGAGGAGTAACGAG 2156
Query 72 aggaaagagagggagagTGATGACGAAGGCAATGGATAAAGCTGCAGCTCAAAGACAGAA 131
||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||
Sbjct 2155 AGGAAAGAGAGGGAGAGTGATGATGGAGGCAATGGATAAAGCTGCAGCTCAGAGACAGAA 2096
Query 132 GAGGATGATCAAGAACCGTGAATCCGCTGCTAGGTCTCGAGAGAGGAAACAAGCTTATCA 191
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2095 GAGGATGATCAAGAACCGTGAATCCGCTGCTAGGTCTCGAGAGAGGAAACAGGCTTATCA 2036
Query 192 AGTTGAGTTAGAGACTTTGGCTGCGAAATTAGAGGAAGG-GAATGAGAAGCTTTTGAAGG 250
||||||||||||||||||||||| || |||||||| || ||||||| ||||||||||||
Sbjct 2035 GGTTGAGTTAGAGACTTTGGCTGCCAAGTTAGAGGA-GGAGAATGAGCAGCTTTTGAAGG 1977
Query 251 AGATTGAAGAGAGCACTAAAGAGAGATTCAAGAAGCTCATGGACGTTTTGATTCCG 306
||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||
Sbjct 1976 AGATTGAAGAGAGCACTAAAGAGAGATACAAGAAGCTCATGGAGGTTCTGATTCCG 1921
> AT4G27160.1 | Symbols: AT2S3, SESA3 | seed storage albumin 3
| chr4:13611796-13612563 FORWARD LENGTH=768
Length=768
Score = 379 bits (205), Expect = 2e-104
Identities = 415/509 (82%), Gaps = 44/509 (9%)
Strand=Plus/Plus
Query 321 TAGCAAAAAATGGCGAACAAGCTCTTCATCGTCTGCGCATCTCTCGCTCTCTGCTTCCTC 380
|||||||| ||||| |||||||||||| ||||||||||| ||||||| ||||||||||||
Sbjct 32 TAGCAAAACATGGCTAACAAGCTCTTCCTCGTCTGCGCAACTCTCGCCCTCTGCTTCCTC 91
Query 381 CTCACCAACGCTTCCATCTACCGCA-C--TGTCG---TCG-A-ACTATGACGCCAGCAAC 432
||||||||||||||||||||||||| | ||||| ||| | | ||||||||||||||
Sbjct 92 CTCACCAACGCTTCCATCTACCGCACCGTTGTCGAATTCGAAGAAGATGACGCCAGCAAC 151
Query 433 CCCATAGGCCCAAGACAGAAATGTCAGAGGGAGTTTCAGAAAGAACAACACCTTAGAGCT 492
||| |||| |||||||||| ||| |||| |||||||||| || ||||||||| ||||||
Sbjct 152 CCCGTAGGTCCAAGACAGAGATGCCAGAAGGAGTTTCAGCAATCACAACACCTAAGAGCT 211
Query 493 TGCCAGCGATTGATGCGCAAGCAAATGAGACAAGGCCATGGTGGT-G----------GA- 540
|||||| ||| |||| ||||||||||||| ||||| | ||||||| | ||
Sbjct 212 TGCCAGAGATGGATGAGCAAGCAAATGAGGCAAGGACGTGGTGGTGGTCCTTCCCTCGAC 271
Query 541 -A-GA---CGACATCGA--GAACCC-GCAGAGA-CCCTCGCTACTCCAGAAGTGCTGCAG 591
| || ||| |||| | ||| |||| || || |||||||||| |||||||||
Sbjct 272 GATGAGTTCGATTTCGAGGGCCCCCAGCAGGGATACC-AGCTACTCCAGCAGTGCTGCAA 330
Query 592 CGAGCTTCGCCA-GAAGACCCAGATTGCGTTTGCCCCACCTTGAAACAAGCTGCCAAGGC 650
|||||||||||| ||||| |||| |||||||||||||||||||||||||||||||| |||
Sbjct 331 CGAGCTTCGCCAGGAAGAGCCAGTTTGCGTTTGCCCCACCTTGAAACAAGCTGCCAGGGC 390
Query 651 CGTTAGACTCCAGGGACAGCAGCACCAACCAATGAAAGTC-AGGAAAATTTACCAGACAG 709
||||| |||||||||||||| | | ||| | || || ||||||||||||||| |||
Sbjct 391 AGTTAGCCTCCAGGGACAGCA-CGG-A-CCATTCCAA-TCCAGGAAAATTTACCAGTCAG 446
Query 710 CTAAGAACTTGCCTAACATTTGCAAAATCCCGCAAGTTGATGTTTGCCCCTTCCAGA--- 766
||||| ||||||||||||||||||| |||| |||||||| || || ||||||||||
Sbjct 447 CTAAGTACTTGCCTAACATTTGCAAGATCCAGCAAGTTGGTGAATGTCCCTTCCAGACCA 506
Query 767 ---TCCCTT-CATTCCCTTCTTACTACTA 791
|||||| | |||||| ||||||||||
Sbjct 507 CCATCCCTTTC-TTCCCTCCTTACTACTA 534
> AT4G27170.1 | Symbols: SESA4, AT2S4 | seed storage albumin 4
| chr4:13613596-13614283 FORWARD LENGTH=688
Length=688
Score = 374 bits (202), Expect = 9e-103
Identities = 241/259 (93%), Gaps = 5/259 (2%)
Strand=Plus/Plus
Query 537 TGGAAGACGACATCGAGAACCCGCAGAGACCCTC-GCTACTCCAGAAGTGCTGCAGCGAG 595
||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||
Sbjct 286 TGGAAGACGACATCGAGAACCCGCAGAGA-CGACAGCTACTCCAGAAGTGCTGCAGCGAG 344
Query 596 CTTCGCCA-GAAGACCCAGATTGCGTTTGCCCCACCTTGAAACAAGCTGCCAAGGCCGTT 654
|||||||| ||||| |||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 345 CTTCGCCAAGAAGAGCCAGTTTGCGTTTGCCCCACCTTGAGACAAGCTGCCAAGGCCGTT 404
Query 655 AGACTCCAGGGACAGCAGCACCAACCA-ATGAAAGTCAGGAAAATTTACCAGACAGCTAA 713
||| ||||||||||||| ||||||||| | | |||||||||||||||||||| |||||||
Sbjct 405 AGATTCCAGGGACAGCAACACCAACCAGA-GCAAGTCAGGAAAATTTACCAGGCAGCTAA 463
Query 714 GAACTTGCCTAACATTTGCAAAATCCCGCAAGTTGATGTTTGCCCCTTCCAGATCCCTTC 773
| |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 464 GTACTTGCCTAACATTTGCAAAATCCAGCAAGTTGGTGTTTGCCCCTTCCAGATCCCTTC 523
Query 774 ATTCCCTTCTTACTACTAA 792
| |||||||||||||||||
Sbjct 524 AATCCCTTCTTACTACTAA 542
> AT4G27150.1 | Symbols: SESA2, AT2S2 | seed storage albumin 2
| chr4:13609341-13610075 FORWARD LENGTH=735
Length=735
Score = 257 bits (139), Expect = 1e-67
Identities = 200/228 (88%), Gaps = 9/228 (4%)
Strand=Plus/Plus
Query 321 TAGC-AAAAAATGGCGAACAAGCTCTTCATCGTCTGCGCATCTCTCGCTCTCTGCTTCCT 379
|||| |||||||||| |||||||||||| ||||||||||| || |||| |||||||||||
Sbjct 46 TAGCAAAAAAATGGCAAACAAGCTCTTCCTCGTCTGCGCAACTTTCGCCCTCTGCTTCCT 105
Query 380 CCTCACCAACGCTTCCATCTACCGCACTGTCGTCGA-----ACTA---TGACGCCAGCAA 431
|||||||||||||||||||||||||||||| ||||| || | ||||||||||||
Sbjct 106 CCTCACCAACGCTTCCATCTACCGCACTGTTGTCGAGTTCGACGAAGATGACGCCAGCAA 165
Query 432 CCCCATAGGCCCAAGACAGAAATGTCAGAGGGAGTTTCAGAAAGAACAACACCTTAGAGC 491
|||||| |||||||||||||||||||||| |||||||||| || ||| ||||| |||||
Sbjct 166 CCCCATGGGCCCAAGACAGAAATGTCAGAAGGAGTTTCAGCAATCACAGCACCTAAGAGC 225
Query 492 TTGCCAGCGATTGATGCGCAAGCAAATGAGACAAGGCCATGGTGGTGG 539
||||||| ||||||||||| ||||||||| ||||||| |||||||||
Sbjct 226 TTGCCAGAAATTGATGCGCATGCAAATGAGGCAAGGCCGTGGTGGTGG 273
> AT5G44080.1 | Symbols: | Basic-leucine zipper (bZIP) transcription
factor family protein | chr5:17738652-17739873 REVERSE
LENGTH=1222
Length=1222
Score = 220 bits (119), Expect = 1e-56
Identities = 216/260 (83%), Gaps = 17/260 (7%)
Strand=Plus/Plus
Query 58 ggaggagga-atgagaggaaagagagggagagTGAT-GACGAAGGCAATGGATAAAGCTG 115
||||||||| | ||||| ||||||| ||||||||| | | || || |||||||||| |
Sbjct 773 GGAGGAGGAGCT-AGAGGGAAGAGAGCGAGAGTGATGGTTG-AGCCATTGGATAAAGCAG 830
Query 116 CAGCTCAAAGACAGAAG-AGGATGATCAAGAACCGTGAATCCGCTGCTAGGTCTCGAGAG 174
| || || |||||| || |||||||| ||||| |||||||| || ||||||||| |||||
Sbjct 831 CTGCACAGAGACAG-AGAAGGATGATTAAGAATCGTGAATCTGCAGCTAGGTCTAGAGAG 889
Query 175 AGGAAACAAGCTTATCAAGTTGAGTTAGA-GACTTTGGCTGCGAAA-TTAGAGGAAGGGA 232
||||||||||||||||||||||||||||| | ||||||||||||| || ||||||| ||
Sbjct 890 AGGAAACAAGCTTATCAAGTTGAGTTAGAAG-CTTTGGCTGCGAAGCTT-GAGGAAGAGA 947
Query 233 ATGAGAAGCTTT-TGAAGGAGATTGAAGAGA-GCACTAAAGAGAGATTCAAGAAGCTCAT 290
||||| ||||| | |||||||||||||| | | | |||||||||| | ||||| | ||
Sbjct 948 ATGAGTTGCTTTCT-AAGGAGATTGAAGATAAG-AGGAAAGAGAGATACCAGAAGTTGAT 1005
Query 291 GGACGTTT-TGATTCC-GTT 308
||| |||| ||||||| |||
Sbjct 1006 GGA-GTTTGTGATTCCTGTT 1024
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38529590749
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5