BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg889514
Length=1944
Score E
Sequences producing significant alignments: (Bits) Value
AT4G26420.1 | Symbols: GAMT1 | S-adenosyl-L-methionine-dependen... 1698 0.0
> AT4G26420.1 | Symbols: GAMT1 | S-adenosyl-L-methionine-dependent
methyltransferases superfamily protein | chr4:13350796-13352569
REVERSE LENGTH=1312
Length=1312
Score = 1698 bits (919), Expect = 0.0
Identities = 1064/1134 (94%), Gaps = 9/1134 (1%)
Strand=Plus/Plus
Query 1 ATGGAGTCGTCACAGAGCCTCGAGCACGTGCTCTCCATGCAAGGTGGCGAGGATGACGCC 60
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 83 ATGGAGTCGTCACGGAGCCTCGAGCACGTGCTCTCCATGCAAGGTGGCGAGGATGACGCG 142
Query 61 AGCTACGTCAAAAACTGTTACGGTCCTGCCGCAGC-TTTAGCCTTGAGCAAACCAATGCT 119
|||||||||||||||||||||||||| || ||| | ||||||||||||||||||||||||
Sbjct 143 AGCTACGTCAAAAACTGTTACGGTCCAGCGGCA-CGTTTAGCCTTGAGCAAACCAATGCT 201
Query 120 GACGTCAGCCATCAATTCCATAAAGCTCACCGAAGGTTACTCCTCTCACCTGAAAATAGC 179
|||| |||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 202 GACGACAGCCATCAACTCCATAAAGCTCACCGAAGGTTGCTCCTCTCACCTGAAAATAGC 261
Query 180 AGATTTAGGCTGCGCAATCGGAGACAACACGTTTTCCACGGTGGACACGGTGGTTGAGGT 239
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 262 CGATTTAGGTTGCGCAATCGGAGACAACACGTTTTCCACGGTGGAAACGGTGGTTGAGGT 321
Query 240 GTTACGGCAGAAGCTTGCCGTGATTGACGGTGGAACCGAGCCGGAGACGGAGTTCGAGGT 299
|||| || ||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 322 GTTAGGGAAGAAGCTAGCCGTGATTGACGGTGGAACCGAGCCGGAGATGGAGTTCGAGGT 381
Query 300 CTTCTTCTCTGACTTGCCTTCCAACGACTTCAACACGTTGTTTCGGTCGTTAGATGAGAA 359
|||||||||||||||| |||||||||| |||||| |||||||||||||||| ||||||||
Sbjct 382 CTTCTTCTCTGACTTGTCTTCCAACGATTTCAACGCGTTGTTTCGGTCGTTGGATGAGAA 441
Query 360 AGTGAACGGTTCGAGCCGGAAGTACTTCGGGGCTGGCGTTCCCGGCTCTTTCTATAAACG 419
|||||||||||||||||| |||||||||| |||||||||||||||||| |||||||| ||
Sbjct 442 AGTGAACGGTTCGAGCCGAAAGTACTTCGCGGCTGGCGTTCCCGGCTCGTTCTATAAGCG 501
Query 420 TCTGTTTCCGAAAGGAGAGCTCCATGTCGTTGTGGCTATGACCGCTTTACAGTGGCTCTC 479
|||||||||||||||||||||||||||||||||| ||||| | |||||||| ||||||||
Sbjct 502 TCTGTTTCCGAAAGGAGAGCTCCATGTCGTTGTGACTATGTCTGCTTTACAATGGCTCTC 561
Query 480 TCAGATACCCGAAAAAGTGATGGAGAAAGGATCGAAGTCATGGAACAAGGGAAGGGTGTG 539
|||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 562 TCAGGTACCTGAAAAAGTGATGGAGAAAGGATCGAAGTCATGGAACAAGGGAGGGGTGTG 621
Query 540 GATTGAAGGAGCAGAGAAAGAAGTCGTGGAGGCATACACGGAGCAATCAGACAAGGACTT 599
||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 622 GATTGAAGGAGCAGAAAAAGAAGTCGTGGAGGCATACGCGGAGCAAGCAGACAAGGACTT 681
Query 600 AGTCGAGTTCTTGAAATGTCGCAAAGAGGAGATTGTGGTAGGAGGAGTGTTGTTTATGTT 659
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 682 AGTCGAGTTCTTGAAATGTCGCAAAGAGGAGATTGTGGTAGGAGGAGTGTTGTTTATGCT 741
Query 660 GATGGGTGGTCGACCTTCTGGGTCAATGAGCCAAATCAGTGATCCTGATTCGAGTCTCAA 719
||||||||||||||||||||| || ||| ||||||| ||||||||||||||||||||||
Sbjct 742 GATGGGTGGTCGACCTTCTGGCTCCGTGAACCAAATCGGTGATCCTGATTCGAGTCTCAA 801
Query 720 ACACCCTTTCACAACTTTGATGGATCAAGCTTGGCAAGATCTAGTAGATGAGGTTTTGAT 779
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 802 ACACCCTTTCACAACTTTGATGGATCAAGCTTGGCAAGATCTAGTAGATGAGGGTTTAAT 861
Query 780 AGAAGAGGAGAAAAGAGATAGTTTCAACATTCCGGTGTACTTTAGAACCACGGAGGAGAT 839
|||||||||||| |||||| ||||||||||||||||||||||||||||||| || |||||
Sbjct 862 AGAAGAGGAGAAGAGAGATGGTTTCAACATTCCGGTGTACTTTAGAACCACCGAAGAGAT 921
Query 840 AGCTGCGGCGATTGATCGTTGTGGTGGCTTCAAGGTAGAGAAAATGGAGAATCTGA-AAG 898
|| ||||||||||||||||||||||| || ||| ||||||||| ||||||||||| ||
Sbjct 922 TGCGGCGGCGATTGATCGTTGTGGTGGTTTTAAGATAGAGAAAACGGAGAATCTGATAA- 980
Query 899 TAGCTGACCACATGAATGGTAAGCAGGAAGAGTTGATGAAAGATCCGGATTTGTACGGTC 958
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 981 TAGCTGACCACATGAATGGTAAGCAGGAAGAGTTGATGAAAGATCCGGATTCGTACGGTC 1040
Query 959 GAGATAGGGCTAACTATGCTCAAACCGGTTTAAAGCCGA-CGGTTCAGGCCTATCTCGGT 1017
||||||||||||||||||||||| ||||||||||||||| || ||||||||||||| |||
Sbjct 1041 GAGATAGGGCTAACTATGCTCAAGCCGGTTTAAAGCCGATCG-TTCAGGCCTATCTTGGT 1099
Query 1018 CCTGACCTGACCCGTAAGCTCTTCAAACAGTACGCAATTCGAGCTGCTGCCGACAAAGAA 1077
|||||||| || | |||||||||||||| ||||||| || |||| |||||||||||||||
Sbjct 1100 CCTGACCTAACTCATAAGCTCTTCAAACGGTACGCAGTTAGAGCAGCTGCCGACAAAGAA 1159
Query 1078 ATTCTCAACAAGAATTGTTTCTATCATATGATCGCTGTTTCAGCGGTTAGGGTT 1131
||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 1160 ATTCTCAACAAC--T-GTTTCTATCATATGATCGCTGTTTCAGCGGTTAGGGTT 1210
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96284645310
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5