BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg889524
Length=933
Score E
Sequences producing significant alignments: (Bits) Value
AT4G26280.1 | Symbols: | P-loop containing nucleoside triphosp... 1400 0.0
AT3G45070.1 | Symbols: | P-loop containing nucleoside triphosp... 193 3e-48
> AT4G26280.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr4:13304721-13305722
REVERSE LENGTH=945
Length=945
Score = 1400 bits (758), Expect = 0.0
Identities = 865/917 (94%), Gaps = 5/917 (1%)
Strand=Plus/Plus
Query 1 ATGGAGAAGTGGATGAACTTGATGAGAGACGAAGACTTAACGGAAGAAACAAAGACTCTA 60
|||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGAAGTGGATGAAC-T--TGAGAGACGAAGACTTAACGGAAGAAACAAAGACTCTA 57
Query 61 ATCTCTTCACTTCCTTCAGAGAAAGCCTACCTCGGTCGAAACCTCTGCAAGTACCAAGGT 120
|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 58 ATCTCTTCACTTTCTTCAGAGAAAGGGTACCTCGGTCGAAACCTCTGCAAGTACCAAGGC 117
Query 121 TCTTGGTATTACTACAACTTTCTCCAAGGCGTTCTCAATTTCCAGAGAGGTTTTAAGCCT 180
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 118 TCTTGGTATTACTACAACTTTCTCCAAGGTGTTCTCAATTTCCAGAGAGGTTTTAAGCCT 177
Query 181 CAAGACACCGATGCTATCGTCGCATCGTACCCAAAATGCGGCACCCTGTGGCTCAAGGCA 240
|||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 178 CAAGACACTGATATTATCGTCGCATCGTACCCAAAATCCGGCACCCTGTGGCTCAAGGCA 237
Query 241 CTCACAGTTGCGCTCGTTGAGAGATCAAAGAACCCTTCGTC-TGATGATCCTACGAGCCA 299
||||| || ||||| |||||||| ||||||||||||| || ||||||||||| ||||||
Sbjct 238 CTCACTGTCGCGCTTTTTGAGAGAACAAAGAACCCTTC-TCATGATGATCCTATGAGCCA 296
Query 300 TCCTCTTTTATCCAACAATCCTCACAACCTCCTCACATCATCATCTCCAAGGCTGTTCTC 359
||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 297 TCCTCTTCTATCCAACAATCCTCACAACCTCCTCTCATCATCATCTCCAAGGTTGTTCTC 356
Query 360 TACTCACACGCCTTTCAATACGCTCCAAGTAGCTCTCAAAGACTCTCCTTGCAAGGTACT 419
|||||||||||||||| | ||||| ||||||||| |||| ||||||||||||||||| |
Sbjct 357 TACTCACACGCCTTTCCACACGCTGCAAGTAGCTGTCAAGGACTCTCCTTGCAAGGTGGT 416
Query 420 TTACATTTGCAGGGACGCGAAGGATTCTCTGGTGTCACGTTGGCATATCGTTTGCAGGAG 479
|||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 417 TTACATCTGCAGGGACGCGAAAGATTCGCTGGTGTCACGTTGGCATATCGTTTGCAGGAG 476
Query 480 TCTGAATAAAGAAGAGGACAGAACCATTCTTGAGTCTATGTTTGAGTCCTTTTGCAGCGG 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 TCTGAATAAAGAAGAGGACAGAACCATTCTTGAGTCTATGTTTGAGTCCTTTTGCAGCGG 536
Query 540 AGTCTGCTTGTTTGGTCCGTTCTGGGACCATATCCTGAGTTATTGGAAAGCTAGCTTGGA 599
||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||
Sbjct 537 AGTCTGCTTGTTTGGTCCGTTTTGGGATCATATCCTGAGTTACTGGAAAGCTAGCTTGGA 596
Query 600 AAAGCCAAAGCAAGTGCTTTTCATGAGGTACGATGAAATAAAAACAGATCCTCATGGTCA 659
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 597 AAAGCCAAAGCAAGTGCTTTTCATGAGGTATGATGAGATAAAAACAGATCCTCATGGTCA 656
Query 660 GATCAAGAAACTTGCAGAGTTCTTGGGTTGTCCATTTTCTAAGGAAGAAGAAAGGAATGG 719
| |||||||||| |||||||| ||||||||||||||||||||||||||||||| ||| ||
Sbjct 657 GCTCAAGAAACTCGCAGAGTTTTTGGGTTGTCCATTTTCTAAGGAAGAAGAAAAGAACGG 716
Query 720 ATCAATAGATAAGATCTTGGAGATGTGTTCTCTGCCTAACCTGAGCAGTTTGGATGTGAA 779
||| || |||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 717 ATCTCTAAATAAGATCTTGGAGATGTGTTCTCTGCCTAACCTGAGCAGTTTGGAGGTTAA 776
Query 780 CAAGACAGGAAAATCAATCAATGGCATAGAGTACAAGAACCATTTCCGCAAAGGGATAGT 839
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 CAAGACCGGAAAGTCAATCAATGGCATAGAGTACAAGAACCATTTCCGCAAAGGGATAGT 836
Query 840 TGGTGATTGGAAGAATCATCTAACTCCGGAAATGGGTAACAAAATCGACATGATCATGAA 899
|||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 837 TGGTGACTGGAAGAATCATCTAACTCCGGAAATGGGTAGCAAAATCGACATGATCATGAA 896
Query 900 GGAGAAACTCAAAGATT 916
|||||||||||||||||
Sbjct 897 GGAGAAACTCAAAGATT 913
> AT3G45070.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:16486283-16487349
REVERSE LENGTH=1067
Length=1067
Score = 193 bits (104), Expect = 3e-48
Identities = 232/289 (80%), Gaps = 27/289 (9%)
Strand=Plus/Plus
Query 12 GATGAACTTGATGAGAGACGAAGA-CTTAACGGAAGAAACAAAGACTCTAATCTCTTCAC 70
||||||||||| || | ||||| || ||| ||||||||||||||||||||||||||||
Sbjct 6 GATGAACTTGA-GA-A-TTGAAGACCTAAAC-GAAGAAACAAAGACTCTAATCTCTTCAC 61
Query 71 TTCCTTCAGAGAAAGCCTAC-CTCGGTCGAAACCTCT--GCAAGTACCAAGGTTCTTGGT 127
|||||||||| |||| | | || || |||| || | ||||||| ||||| | |||||
Sbjct 62 TTCCTTCAGACAAAGATTTCACT-GG--GAAAACTATTTGCAAGTATCAAGGATGTTGGT 118
Query 128 ATTACT-ACAACT-TTCTCCAAGGC-GTTCTCAATTTCCAGAGAGGTTTTAAGCCTCAAG 184
|| ||| |||| | |||| |||| | || ||||||||||||| | | || ||||||||||
Sbjct 119 AT-ACTCACAA-TGTTCTTCAAG-CTGTCCTCAATTTCCAGAAAAGCTTCAAGCCTCAAG 175
Query 185 ACACCGATG-CTATCGTCGCATCGTACCCAAAATGCGGCACC-CTGTGGCTCAAGGCACT 242
|||||||| | ||||| || |||| ||| |||||||||||| || ||||||||||| ||
Sbjct 176 ACACCGATATC-ATCGTTGCTTCGTTCCCTAAATGCGGCACCACT-TGGCTCAAGGCGCT 233
Query 243 CACAGTT-GCGCTCGTTGAGAGATCAAAGA-ACCCTTCGTC-TGATGAT 288
||| || || ||| || | |||||||| | | ||||| || |||||||
Sbjct 234 TACA-TTCGCACTCCTTCATAGATCAAA-ACAGCCTTC-TCATGATGAT 279
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45612605476
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5