BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg889546

Length=186
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G26055.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   291    2e-78


> AT4G26055.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT5G57080.1); Has 
30201 Blast hits to 17322 proteins in 780 species: Archae 
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants 
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI 
BLink). | chr4:13214098-13214429 REVERSE LENGTH=189
Length=189

 Score =  291 bits (157),  Expect = 2e-78
 Identities = 179/189 (95%), Gaps = 3/189 (2%)
 Strand=Plus/Plus

Query  1    ATGAACAATAAATTTGGCCGGAAGAAGCCGACGGGAACACCGTCTCTAGCGTGGTCTACC  60
            |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| || 
Sbjct  1    ATGAACAATAAATTTGGCGGGAAGAAGCCGACGGGAACACCGTCACTAGCGTGGTCGACA  60

Query  61   GTCGTCGTTGTAGCCTCTCTGCTCGCCGGAGCCTCCGTCGTTCACAATATATACAAGCCA  120
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   GTCGTAGTTGTAGCCTCTCTGCTCGCCGGAGCCTCCGTCGTTCACAATATATACAAGCCA  120

Query  121  GATCTCAGATTACCTCAGATCGAAAGCGATGAAGGAGAC-A-A-GGAGGAGTCTGCAAAC  177
            ||||||| ||||||||||||||||| ||||||||||||| | | ||||||||||||||||
Sbjct  121  GATCTCACATTACCTCAGATCGAAAACGATGAAGGAGACGAGAAGGAGGAGTCTGCAAAC  180

Query  178  AAAGGTTAA  186
            |||||||||
Sbjct  181  AAAGGTTAA  189



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 8199120213


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5