BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg889547
Length=1161
Score E
Sequences producing significant alignments: (Bits) Value
AT4G26050.1 | Symbols: PIRL8 | plant intracellular ras group-re... 1803 0.0
> AT4G26050.1 | Symbols: PIRL8 | plant intracellular ras group-related
LRR 8 | chr4:13210459-13213477 FORWARD LENGTH=1543
Length=1543
Score = 1803 bits (976), Expect = 0.0
Identities = 1102/1162 (95%), Gaps = 11/1162 (1%)
Strand=Plus/Plus
Query 1 ATGATGGGTTACGAGGAGATGAATCAGATGACAATGACGACAACGGCGATGATGAAGAAT 60
||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 64 ATGATGGGTTACGAGCAGATGAATCAGATGACAATGACGACAACAGCGATGATGAAGAAT 123
Query 61 TTCAATAAGAGGGGACCGATCAATACTCCACATAAGAAAATGACGAGGAGAAGTGTGTCG 120
| |||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 124 TACAATAAGAAGGGACTAATCAATACTCCACAGAAGAAAATGACGAGGAGAAGTGTGTCG 183
Query 121 GCCATTGATGGTGGTGCGGCGGCCGCAGCTGCGACTGCTGGAGAAGGAGACCGCCGCCGG 180
|| |||||||||||| ||||||||||| ||| ||||||||| ||||| | |
Sbjct 184 GCTATTGATGGTGGT---------GCAGCTGCGACGGCTAAAGAAGGAGATCGCCGTCAG 234
Query 181 AATCTCAAGACTCTTGATCTTAGCGGCATGTCCTTGGCTTCTCTCTCGGCCTCTTCTATC 240
||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 235 AATATCAAGACTCTTGATCTTAGCGGCATGTCCTTGGCTTCTCTCTCTGCCTCTTCTATC 294
Query 241 AACTTAGCTTCAATCTCCAAACTCGATCTCTCCAACAACAATATTCAGAAAATTCCGGAA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 AACTTAGCTTCAATCTCCAAACTCGATCTCTCCAACAACAATATTCAGAAAATTCCGGAA 354
Query 301 TCTCTAGTAGCGAGAATGTTAAATTTGTGGGCATTGGATTTGCAATCCAATCAGCTAAAA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 TCTCTAGTAGCGAGAATGTTAAATTTGTGGGCATTGGATTTGCAATCCAATCAGCTAAAA 414
Query 361 ACTCTTCCAAACTCCATTGGATGTCTTTCCAAACTTAAGTTTCTTAATGTGTCCGGAAAT 420
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 415 ACTCTTCCAAACTCCATTGGATGTCTTTCCAAACTTAAGTTTCTTAATGTCTCCGGAAAT 474
Query 421 TATCTCCAATTTCTCCCCAAAACTATCGAAGATTGCAGATCGCTGGAAGAGCTGAACGCC 480
|||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 475 TATCTCCAATCTCTCCCCAAAACTATAGAAGATTGCAGATCGCTGGAAGAGCTGAACGCC 534
Query 481 AACTTCAACGAGCTTACAAGGCTCCCAGACGCGATAGGATTCGAGCTAACGAATCTGACG 540
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 535 AACTTCAACGAGCTTACAAGGCTCCCAGACGCGATAGGGTTTGAGCTAACGAATCTGACG 594
Query 541 AAGCTCTCCGTCAACTCCAACAAGCTTGTTCTGTTACCAAACTCCGTTAGCTACTTGACG 600
||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||
Sbjct 595 AAGCTCTCCGTCAACTCAAACAAGCTTGTTCTCTTGCCAAACTCCGTTAGCTACTTGACG 654
Query 601 TCGCTGCGTGTCCTCGACGCGCGGCTAAACCGGCTTAGTTCCCTCCCTGAGGATCTTGAG 660
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 655 TCGCTGCGTGTGCTCGACGCGCGGCTAAACCGCCTTAGTTCCCTCCCTGAGGATCTTGAG 714
Query 661 AACCTCGTGAACCTTCAGGTCCTTAACGTTAGCCAGAACTTCCAGCACTTGACGACGTTA 720
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 715 AACCTCGTGAACCTTCAGGTCCTCAACGTTAGCCAGAACTTCCAGCACTTGACGACGTTA 774
Query 721 CCTTACTCCGTTGGGTTGTTGATATCTCTCGTCGAGCTTGACGTTAGTTATAACGGAATT 780
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 775 CCTTACTCCGTTGGGTTGTTGATATCTCTCGTGGAGCTTGATGTTAGTTATAACGGAATT 834
Query 781 ACGGTTTTACCGGACTCCCTCGGCTGTCTTCGCCGGATTCAGAAGCTCTCTGTGGAGGGT 840
||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 835 ACGGTTTTACCAGACTCCCTCGGCTGTCTTCGCCGGATTCAGAAGCTATCCGTGGAGGGT 894
Query 841 AATCCCCTCATTTCCCCACCTTTTGAAGTGGTGGAACAGGGATTGGAAGCATTGAAGCAG 900
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 895 AATCCCCTCATTTCCCCACCATTTGAAGTGGTGGAACAGGGGTTGGAAGCATTGAAGCAG 954
Query 901 TACATGAGCGAGAAAATGACCGAGTCTTATaaaaaaaCTCCGACCAAGAAAAAGTCTTGG 960
|| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 955 TATATGAGCGAGAAGATGACCGAGTCTTATAAGAAAACTCCGACCAAGAAAAAGTCTTGG 1014
Query 961 GGCATTGGTAAGCTCGTCAAGTACGGCCTGAGCTCTTCTCCGGGGAG-AGGAACTGGCCG 1019
||||||||||||||||| ||||||||||||||||||||||||||||| || | | |||||
Sbjct 1015 GGCATTGGTAAGCTCGTAAAGTACGGCCTGAGCTCTTCTCCGGGGAGGAGTACC-GGCCG 1073
Query 1020 TGGAGACGGGAGGGAAGGCTTCATCAATGTATCCGATTATCGCCAAATCGATGGAATCGC 1079
|| |||||||| ||||||||||||||||||||| ||||| ||||||||||| ||||||||
Sbjct 1074 TGAAGACGGGAAGGAAGGCTTCATCAATGTATCTGATTACCGCCAAATCGACGGAATCGC 1133
Query 1080 CTCCCCGCGACACGTGTCCCTCTTCAACCCGCGACGCCTTTTGTCTCCACTCTCCGCGTA 1139
||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1134 CTCACCGCGACATGTGTCCCTCTTCAACCCGCGACGCCTCTTGTCTCCACTCTCCGCGTA 1193
Query 1140 TTTCTCTCCTCCAAGGTATTAG 1161
|||||||||||| |||||||||
Sbjct 1194 TTTCTCTCCTCCTAGGTATTAG 1215
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56977618575
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5