BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg889548
Length=651
Score E
Sequences producing significant alignments: (Bits) Value
AT4G26030.1 | Symbols: | C2H2-like zinc finger protein | chr4:... 619 9e-177
> AT4G26030.1 | Symbols: | C2H2-like zinc finger protein | chr4:13205537-13206199
FORWARD LENGTH=663
Length=663
Score = 619 bits (335), Expect = 9e-177
Identities = 572/679 (84%), Gaps = 46/679 (7%)
Strand=Plus/Plus
Query 1 ATGGTTTCTCCTTTCAGTATGCCTTGCACT-GCTCAAATC-AGTGGTTTTGTTAACTTTT 58
||||||||||||||||||||||||| || | ||||||| | |||||||||||||||| ||
Sbjct 1 ATGGTTTCTCCTTTCAGTATGCCTTTCA-TAGCTCAAA-CTAGTGGTTTTGTTAACTATT 58
Query 59 CTCAAGTTTCTATCACTCACACTATCACAAATAGGTATCATGCTATTATTCCTACCAA-T 117
||||||||| ||||||||| || ||| |||| |||||||||||| ||||||| | |||
Sbjct 59 CTCAAGTTTTTATCACTCAAACCATCGCAAAAAGGTATCATGCTCTTATTCCGA-CAAGC 117
Query 118 AATATGGTCATTGTCCAAAACGATAATGATCATGTCAAGCGTGTCATGCCTTCTTATCCA 177
|||||||||||||||||||| |||||||||| |||||| ||| ||||| |||||||||||
Sbjct 118 AATATGGTCATTGTCCAAAATGATAATGATCGTGTCAACCGTTTCATGACTTCTTATCCA 177
Query 178 CCAATTTTGAACTCTACAGTTCATCCTCCAAATGGTTTTGATAATCATTACGAAACCTTC 237
||||||||||| ||||||||| | || ||||||| ||||||||| || || |||||||||
Sbjct 178 CCAATTTTGAAATCTACAGTTAACCCCCCAAATGATTTTGATAAACAGTATGAAACCTTC 237
Query 238 ACACCCAAACCCATCGATTTC--TT-TT--------G----T-CA----G-C--C-TTTA 273
||||| ||||||||||||||| || || | | || | | | |||
Sbjct 238 ACACCTAAACCCATCGATTTCTTTTGTTCGCAACAAGACTATGCATGTCGTCAGCATTTG 297
Query 274 GATAGATTTTCATCGTCTCCAAAACACCT-TCATGAACAATATGTTCATAAAGATGGTCG 332
|||| ||||||||| || |||||||| || |||||| ||||||||||||||| |||||||
Sbjct 298 GATATATTTTCATCCTCCCCAAAACA-CTATCATGAGCAATATGTTCATAAAAATGGTCG 356
Query 333 GCCAGTGAAATATATCCACAAACCAGCTGACGTCCTTGAAGAAATTCATGACTATATTGA 392
| | |||||||||||| |||||| | || ||||||||||||||||||||| | || ||
Sbjct 357 GTCGGTGAAATATATCTGTAAACCAACAGAGGTCCTTGAAGAAATTCATGACGAAATCGA 416
Query 393 TTATGAAAAAGACGGTGGTTGGATATATAGCCTACCCTATCAGAAAGACAGTTCATTTAT 452
||||||||||||||||||||||||||||||||| || | | |||||||||||||||||||
Sbjct 417 TTATGAAAAAGACGGTGGTTGGATATATAGCCTGCCGTTTGAGAAAGACAGTTCATTTAT 476
Query 453 GTGTTTAAAGTGCAACCGTGTGTTTGATACTTCACAAATATTGGCTGCT-CATACAAAAT 511
||| |||||||||| || ||||||||||||||||||| |||| || | |||||| | |
Sbjct 477 ATGTCTAAAGTGCAATAGTTTGTTTGATACTTCACAAATGTTGGTTG-TACATACAGAGT 535
Query 512 TAGTTCATTCTAAGAATGAGACTAATGATGGGGGAAAGAAAAGACTCAAAGTAAATCATC 571
|| |||||||||||||||||||||| || |||| | || ||| || ||||||
Sbjct 536 TAATTCATTCTAAGAATGAGACTAA-GA------AAAG----G-CTTAAATTACATCATC 583
Query 572 AAGAGGTCCATGGTAAATCTCATAAGATCAACAAAGATCAAACTGGAGGACAAAGTTGCA 631
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 584 AAGAATTCCATGGTAAATCTCATAAGATCAACAAAGATCAAACTGGAGGACAAAGTTGCA 643
Query 632 GAAGAAAGTTAAGGCAATA 650
|||||||||| ||||||||
Sbjct 644 GAAGAAAGTTGAGGCAATA 662
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31446576022
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5