BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg889567
Length=1143
Score E
Sequences producing significant alignments: (Bits) Value
AT4G25860.1 | Symbols: ORP4A | OSBP(oxysterol binding protein)-... 1834 0.0
AT4G25850.1 | Symbols: ORP4B | OSBP(oxysterol binding protein)-... 1594 0.0
> AT4G25860.1 | Symbols: ORP4A | OSBP(oxysterol binding protein)-related
protein 4A | chr4:13147326-13149606 FORWARD LENGTH=1271
Length=1271
Score = 1834 bits (993), Expect = 0.0
Identities = 1098/1148 (96%), Gaps = 10/1148 (1%)
Strand=Plus/Plus
Query 1 ATGAGAAGGCACCTTGTGCTGGCCAAACCTTTTTCTCTGGAAGATGAGAAAGATTCTGAG 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 50 ATGAGAAGGCAACTTGTGCTGGCCAAACCTTTTTCTCTGGAAGATGAGAAAGATTCTGAG 109
Query 61 CTCACAGCTTCAAGTGTCATCCGCAAGATCCTCAGTCTCATTAAGACCGTACGCCCAGGA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 110 CTCACAGCTTCAAGTGTCATCCGCAAGATCCTCAGTCTCATTAAGACCGTACGTCCAGGA 169
Query 121 TCTGATCTCACCAATTTTCAGCTGCCACCTCAGCTGATCCTACCAAGATCACGACTCCAA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 170 TCTGATCTCACCAATTTTCAGCTGCCACCTCAGCTGATCCTACCAAGATCACGACTCCAA 229
Query 181 TGTTATGGCGAGATGATCTACAGCTTCGGCGGTCAGGATCTACTTGGG-GAATGCAGCCG 239
|||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 230 TGTTATGGGGAGATGATCTACAGCTTCGGCGGTCAGGATCTACT-GGGCGAATGCAGCCG 288
Query 240 CCGGAATC-TGCCTGTCGAACGGCTCAAATCGGTGGTGACGTGGAACATCTCCACACTCC 298
||| || | | || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 289 CCGTAA-CATTCCCATCGAACGGCTCAAATCGGTGGTGACGTGGAACATCTCCACACTCC 347
Query 299 GTCCCGTAGTCGTTGGCATGTCTCCGTATAACCCCGTTCTCGGCGAGACTCACCACGTCT 358
||||||| |||||||||||||||||||| |||||| |||||||||||||||| |||||||
Sbjct 348 GTCCCGTGGTCGTTGGCATGTCTCCGTACAACCCCATTCTCGGCGAGACTCATCACGTCT 407
Query 359 CCAACGGCTACATCAACGTCCTCACCGAACAAGTAGTGCATCATCCTCCGGTGTCCGCAC 418
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 408 CCAACGGCTACATCAACGTCCTCACCGAACAAGTAATGCATCATCCTCCGGTGTCCGCAC 467
Query 419 TTCATGCAACTCACGAG-AAGGAAAAGATTGACGTGACATGGTGTCAATATTTCACTCCT 477
||||||| |||||||| ||| |||| || ||||| |||||||||||||||||||||||
Sbjct 468 TTCATGCGACTCACGAACAAG-AAAATATCGACGTCACATGGTGTCAATATTTCACTCCC 526
Query 478 AAATTTCGTGGTGCGTACGTGGATGTTGAGGTAAATGGTAAAAGGGTAATGAAGCTTCTG 537
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 527 AAATTTCGTGGTGCGTACGTGGATGTTGAGGTAAATGGTAAAAGGATAATGAAGCTTCTG 586
Query 538 CATCGTAAAGAGACTTATGAGATGGACCAACCGAGACTAATTATGAGATTCTTACCGGCG 597
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 587 CATCATAAAGAGACTTATGAGATGGACCAACCGAGACTAATTATGAAATTCTTACCGGCG 646
Query 598 CCGGGAGCTCACTGGGCCGGAAAAGTCAAGATAAAGTGTCCGGAGACTGATCTCGAAGCT 657
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 647 CCGGGAGCTCATTGGGCCGGAAAAGTCAAGATAAAGTGTCCTGAGACTGATCTCGAAGCT 706
Query 658 GAGTTACATTTGATCTCCGATTCCTTCATTGAAAGATTCAGAGGCAACAATAACAGATCA 717
|||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||
Sbjct 707 GAGTTACATTTGATCTCCGACTCATTCATTGAAAGATTCAGAGGCAACAACAACAGATCA 766
Query 718 ATTAAAGGAAAGATATTTGAATCTTCCTCTGGTAATCAGCTCTATAACATCTATGGCCAT 777
|| ||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 767 ATCAAAGGAAAGATCTTTGAATCTTCCTCTGGTAATCAGCTCTACAACATCTTTGGCCAT 826
Query 778 TGGGACAGAACGGTAATGGCAAAAAATCTGAAGACTGGTGAGG-TCGAGGTTATCTACAA 836
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 827 TGGGACAGAACGGTAATGGCAAAAAATCTGAAGACTGGTG-GGCTCGAGGTTATCTACAA 885
Query 837 TGCCAAGGAGAATATCACAGGACTCAATCCTCCAACTGTCAAGAATCTGCAGGAGGTAAT 896
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 886 TGCCAATGAGAATATCACAGGACTCAAACCTCCAACTGTCAAGAATCTGCAGGAGGTAAT 945
Query 897 GGAGAGCGAGTCGACGATGGTGTGGAGTGAAGTAAGTGA-GCGAATACTGAAGAAAGATT 955
||||||||||||||| || |||||||||||||||||||| | ||||||||||||||||||
Sbjct 946 GGAGAGCGAGTCGACAATAGTGTGGAGTGAAGTAAGTGAAG-GAATACTGAAGAAAGATT 1004
Query 956 GGGAAagagcaagagaagctaagatacttgtggaggagaagcagagagaggctctgaaac 1015
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1005 GGGAAAGAGCAAGAGAAGCTAAGATACTTGTGGAGGAGAAGCAGAGAGAGGCTCTGAAAC 1064
Query 1016 agagagagaCTTCTGGTGAGTCATGGGTTCCCAAACATTTCTCAGTGGTCAAAAACGGTA 1075
|||||||| ||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 1065 AGAGAGAGGCTTCTGGTGAGTCATGGGTTCCCAAACATTTCTCAGTAGTCAAAGACGGTA 1124
Query 1076 AAGACTGGGACTGCTCACCGCCACAGCCCACGGTTCCTCGGGCTCCACTCGTCATCACGG 1135
|||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 1125 AAGACTGGCACTGCTCACCGCTACAGCCCACGGTTCCTCGGGCTCCACTCGTCATCACAG 1184
Query 1136 AGAAATAA 1143
||||||||
Sbjct 1185 AGAAATAA 1192
> AT4G25850.1 | Symbols: ORP4B | OSBP(oxysterol binding protein)-related
protein 4B | chr4:13143648-13146930 FORWARD LENGTH=1639
Length=1639
Score = 1594 bits (863), Expect = 0.0
Identities = 1050/1140 (92%), Gaps = 14/1140 (1%)
Strand=Plus/Plus
Query 1 ATGAGAAGGCACCTTGTGCTGGCCAAACCTTTTTC-TCTGGAAGATGAGAAAGATTCTGA 59
||||||| ||||||||||||||||||||||||||| | |||||||||| |||||||||||
Sbjct 227 ATGAGAAAGCACCTTGTGCTGGCCAAACCTTTTTCGT-TGGAAGATGAAAAAGATTCTGA 285
Query 60 GCTCACAGCTTC-AAGTGTCATCCGCAAGATCCTCAGTCTCATTAAGACCGTACGCCCAG 118
| ||| ||||| || ||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 286 ACACACTGCTTCGAA-TGTCATCCGCAAGATCCTCAGCCTCTTTAAGACCGTACGCCCAG 344
Query 119 GATCTGATCTCACCAATTTTCAGCTGCCACCTCAGCTGATCCTACCAAGATCACGACTCC 178
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 345 GATCTGATCTCACCAATTTTCAGCTGCCACCTCAGCTGAACCTACCAAGATCACAACTCC 404
Query 179 AATGTTATGGCGAGATGATCTACAGCTTCGGCGGTCAGGATCTACTTGGGGAATGCAGCC 238
||||||| ||||||||| |||||||||||| |||||||||||| ||||||||||||||||
Sbjct 405 AATGTTACGGCGAGATGGTCTACAGCTTCGTCGGTCAGGATCTGCTTGGGGAATGCAGCC 464
Query 239 GCCG-GAATCTGCCTGTCGAACGGCTCAAATCGGTGGTGACGTGGAACATCTCCACACTC 297
|||| || ||| || | |||||||||||||| |||||||||||||||||||||||||||
Sbjct 465 GCCGTGA-TCTTCCCATTGAACGGCTCAAATCAGTGGTGACGTGGAACATCTCCACACTC 523
Query 298 CGTCCCGTAGTCGTTGGCATGTCTCCGTATAACCCCGTTCTCGGCGAGACTCACCACGTC 357
||||| || ||| |||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 524 CGTCCGGTGGTCTTTGGCATGTCTCCGTACAACTCCGTTCTCGGCGAGACTCACCACGTA 583
Query 358 TCCAACGG-CTACATCAACGTCCTCACCGAACAAGTAGTGCATCATCCTCCGGTGTCCGC 416
|| ||||| | ||||||||||| || |||||||||||||||||||||||||||| |||||
Sbjct 584 TCGAACGGTC-ACATCAACGTCATCGCCGAACAAGTAGTGCATCATCCTCCGGTTTCCGC 642
Query 417 ACTTCATGCAACTCACGAG-AAGGAAAAGATTGACGTGACATGGTGTCAATATTTCACTC 475
|||||||| |||||||| ||| |||| || ||||||||||||||||||||||||||||
Sbjct 643 TCTTCATGCGACTCACGAACAAG-AAAATATCGACGTGACATGGTGTCAATATTTCACTC 701
Query 476 CTAAATTTCGTGGTGCGT-ACGTGGATGTTGAGGTAAATGGTAAAAGGGTAATGAAGCTT 534
|||||||||||||| | | ||||||| ||||||||||| |||||||||||||||||||||
Sbjct 702 CTAAATTTCGTGGTAC-TCACGTGGACGTTGAGGTAAAGGGTAAAAGGGTAATGAAGCTT 760
Query 535 CTGCATCGTAAAGAGACTTATGAGATGGACCAACCGAGACTAATTATGAGATTCTTACCG 594
||| ||| || ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 761 CTGAATCATATAGAGACTTATGAGATGGACCAACCGAGACTAATAATGAGATTCTTACCG 820
Query 595 GCGCCGGGAGCTCACTGGGCCGGAAAAGTCAAGATAAAGTGTCCGGAGACTGATCTCGAA 654
|||||||||||| |||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 821 GCGCCGGGAGCTTACTGGGCCGGAAAAGTGAAAATAAAGTGTCCGGAGACTGATCTCGAA 880
Query 655 GCTGAGTTACATTTGATCTCCGATTCCTTCATTGAAAGATTCAGAGGCAACAATAACAGA 714
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 881 GCTGAGTTACATTTGATCTCCGATTCATTCATTGAAAGATTCAGAGGCAACAACAACAGA 940
Query 715 TCAATTAAAGGAAAGATATTTGAATCTTCCTCTGGTAATCAGCTCTATAACATCTATGGC 774
||||| ||||||||||| ||||||||||||||||||||||||||||| ||||| | ||||
Sbjct 941 TCAATAAAAGGAAAGATCTTTGAATCTTCCTCTGGTAATCAGCTCTACAACATTTTTGGC 1000
Query 775 CATTGGGACAGAACGGTAATGGCAAAAAATCTGAAGACTGGTGAGGTCGAGGTTATCTAC 834
||||||||||||||||||||||| |||||| | |||||||||||| ||||||| || |||
Sbjct 1001 CATTGGGACAGAACGGTAATGGCGAAAAATATAAAGACTGGTGAGCTCGAGGTCATTTAC 1060
Query 835 AATGCCAAGGAGAATATCACAGGACTCAATCCTCCAACTGTCAAGAATCTGCAGGAGGTA 894
||||||||||||||||||||||||||||| |||||||| |||||||| ||| ||||||||
Sbjct 1061 AATGCCAAGGAGAATATCACAGGACTCAAACCTCCAACAGTCAAGAACCTGGAGGAGGTA 1120
Query 895 ATGGAGAGCGAGTCGACGATGGTGTGGAGTGAAGTAAGTGA-GCGAATACTGAAGAAAGA 953
| ||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||
Sbjct 1121 ACGGAGAGCGAGTCGACAATGGTGTGGAGTGAAGTAAGTGAAG-GAATACTGAAGAAAGA 1179
Query 954 TTGGGAAagagcaagagaagctaagatacttgtggaggagaagcagagagaggctctgaa 1013
|||||||||||||||||||||||||||| ||||||||||||||||||||| | || | ||
Sbjct 1180 TTGGGAAAGAGCAAGAGAAGCTAAGATAGTTGTGGAGGAGAAGCAGAGAGCGTCTTTAAA 1239
Query 1014 acagagagagaCTTCTGGTGAGTCATGGGTTCCCAAACATTTCTCAGTGGTCAAAAACGG 1073
|||||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 1240 ACAGAGAGAGGCTTCTGGTGAGTCATGGGTTCCCAAACATTTCTTAGTGGTCAAAGACGG 1299
Query 1074 TAAAGACTGGGACTGCTCACCGCCACAGCCCACGGTTCCTCGGGCTCCACTCGTCATCAC 1133
|||||||||||| || ||||||| |||||| |||||||||| ||| ||||||||||||||
Sbjct 1300 TAAAGACTGGGATTGTTCACCGCTACAGCCTACGGTTCCTCCGGCGCCACTCGTCATCAC 1359
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56074008765
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5