BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg889572

Length=528
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G25830.1 | Symbols:  | Uncharacterised protein family (UPF04...   854    0.0  


> AT4G25830.1 | Symbols:  | Uncharacterised protein family (UPF0497) 
| chr4:13133529-13135024 FORWARD LENGTH=960
Length=960

 Score =  854 bits (462),  Expect = 0.0
 Identities = 506/528 (96%), Gaps = 0/528 (0%)
 Strand=Plus/Plus

Query  1    ATGGTGAGACTGAGAGAAACAGAAGGGATCCTGAGGCTCTGTATCGTCTTTTTTATTCTC  60
            ||||||| ||||||||||||||||| ||||||||| ||||| |||||||||||| |||||
Sbjct  199  ATGGTGAAACTGAGAGAAACAGAAGTGATCCTGAGACTCTGCATCGTCTTTTTTCTTCTC  258

Query  61   CTCAGTTCTTGTTTGATCGGTTTGGATTCTCAGACCAAAGAGATTGCTTATATCCACAAG  120
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  259  CTCACTTCTTGTTTGATCGGTTTGGATTCTCAGACCAAAGAGATTGCTTATATCCACAAG  318

Query  121  AAAGTCAGTTTCAGATACTTGTTAGCTCTCGAGGCTGAGTTATACATAAATGTTGTGGTT  180
            || |||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct  319  AACGTCAGTTTCAGATATTTGTTAGCTCTCGAGGCTGAGTTATACATAGATGTTGTGGTT  378

Query  181  GCTGCGTATAATTTGGTTCAAATAGGGCTTGGTTGGTATAATGTTGAACAAAAGACCTCC  240
            ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct  379  GCTGCGTATAATTTGGTTCAACTAGGGCTTGGTTGGTACAATGTTGAACAAAAGACCTCC  438

Query  241  AATCCCAAATGGTTCTCTTACCTCTTGGATCAGACAGCGGCGTACGTGGTTTTCGCGGGG  300
            ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||
Sbjct  439  AATCCCAAATGGTTCTCTTACCTCTTGGATCAGACGGCGGCATACGTGGTTTTCGCCGGG  498

Query  301  ACATCAGCCGCGGCGCAACACTCATTGCTGGTGGTGACGGGTTCAAGGGAGCTTCAGTGG  360
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  499  ACATCAGCCGCGGCGCAACACTCATTGCTAGTGGTGACGGGTTCAAGGGAGCTTCAGTGG  558

Query  361  ATGAAGTGGTGTTACAAGTTCACAAGGTTCTGTTTTCAGATGGGAAGTGCCATCATCTTA  420
            ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  559  ATGAAATGGTGCTACAAGTTCACAAGGTTCTGTTTTCAGATGGGAAGTGCCATCATCTTA  618

Query  421  AACTACATTGCGGTGGCTCTCATGGTCCTCCTCTCTTCCATCTCCGCCTTCAACCTCTTC  480
            |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  619  AACTACATTGCGGCAGCTCTCATGGTCCTCCTCTCTTCCATCTCCGCCTTCAACCTCTTC  678

Query  481  CGCCTCTATTCCCCTAAACGTTTCTTTCGCTTTAAGTCCTCCTCCTAA  528
            || |||||||||||||||||||| |||||||||||||| |||||||||
Sbjct  679  CGTCTCTATTCCCCTAAACGTTTTTTTCGCTTTAAGTCATCCTCCTAA  726



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25267775941


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5