BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg889612

Length=345
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G25433.1 | Symbols:  | peptidoglycan-binding LysM domain-con...   460    3e-129
  AT5G62150.1 | Symbols:  | peptidoglycan-binding LysM domain-con...   143    1e-33 


> AT4G25433.1 | Symbols:  | peptidoglycan-binding LysM domain-containing 
protein | chr4:13001198-13001870 REVERSE LENGTH=673
Length=673

 Score =  460 bits (249),  Expect = 3e-129
 Identities = 315/345 (91%), Gaps = 12/345 (3%)
 Strand=Plus/Plus

Query  1    ATGATGAGAGTTACGGTGTCTAGGTCACACACAGTTGCGTCTTACTGCCTGGTGGCACTG  60
            ||||| ||||||||||||||  ||||| ||||||||||||||||||| ||||||||||||
Sbjct  76   ATGATAAGAGTTACGGTGTCGCGGTCAAACACAGTTGCGTCTTACTGTCTGGTGGCACTG  135

Query  61   CTGATCCTAACACTGGCGGGATCGGTTAAAAACAGCCACGGAGGTGGTCGCAGAGAGAAT  120
            |||||||||||||| ||||||||||||||||||||| ||||||| ||| || | ||||||
Sbjct  136  CTGATCCTAACACTTGCGGGATCGGTTAAAAACAGCAACGGAGGAGGTAGC-G-GAGAAT  193

Query  121  TTTAGAGCAGCGGCGAGAGGAAGAAACTGTGAGATTTGGAGAGGGAAGCAAATGATGGAG  180
             ||     |    |  ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  194  ATT-----A---TC--GAGGAAGAAACTGTGAGGTTTGGAGAGGGAAGCAAATGATGGAG  243

Query  181  AGGCCATGTGAGGAGTTATACGTAGTAGGGGAAGGAGATACGCTTCACAGCATCAGCGAA  240
            ||||||||||||||| ||||||||||||| |||||||| |||||||||||||||||||||
Sbjct  244  AGGCCATGTGAGGAGCTATACGTAGTAGGTGAAGGAGACACGCTTCACAGCATCAGCGAA  303

Query  241  AAATGCGGCGACCCGTTTATCGTGGAGCGTAACCCGCATATCCATGACCCGGATGATGTC  300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  304  AAATGCGGCGACCCGTTTATCGTGGAGCGTAACCCGCATATCCATGACCCGGATGATGTC  363

Query  301  TTCCCGGGTCTCCTCATCAAAATTCACATTAACCTCCCTCAATAA  345
            ||||| ||||||||||||||| ||||||||||||||||| |||||
Sbjct  364  TTCCCTGGTCTCCTCATCAAACTTCACATTAACCTCCCTGAATAA  408


> AT5G62150.1 | Symbols:  | peptidoglycan-binding LysM domain-containing 
protein | chr5:24958241-24958769 FORWARD LENGTH=529
Length=529

 Score =  143 bits (77),  Expect = 1e-33
 Identities = 111/127 (87%), Gaps = 4/127 (3%)
 Strand=Plus/Plus

Query  187  TGTGAGGAG-TTATACGTAGTAGGGGAAGGAGATACGCTTCACAGCATCAGCGAAAAATG  245
            ||||||||| || ||| | || || |||||||| || ||||||| |||| |||| |||||
Sbjct  226  TGTGAGGAGATT-TACATCGTCGGAGAAGGAGAGACACTTCACACCATCGGCGATAAATG  284

Query  246  CGGCGACCCGTTTATCGTGGAGCGTAACCCGCATATCCATGA-CCCGGATGATGTCTTCC  304
            |||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||| |
Sbjct  285  CGGCGACCCGTTTATCGTGGAGCGAAACCCGCATATCCATGATCCCG-ATGATGTCTTTC  343

Query  305  CGGGTCT  311
            | |||||
Sbjct  344  CAGGTCT  350



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16135947429


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5