BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg889613
Length=1401
Score E
Sequences producing significant alignments: (Bits) Value
AT4G25430.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1245 0.0
> AT4G25430.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G51850.1);
Has 30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr4:12998361-13000211 FORWARD LENGTH=1590
Length=1590
Score = 1245 bits (674), Expect = 0.0
Identities = 1165/1386 (84%), Gaps = 98/1386 (7%)
Strand=Plus/Plus
Query 15 CTCTAAATGCAAGAAAAAATCCAATGAAGCTAATGGCTGCGTCACTGCACTTTACCACTT 74
||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 252 CTCTAAAAGCAAGAAAAACTCCAATGAAGCTAATGGCTGCGTCACTGCACTTTACCACTT 311
Query 75 TTTTCATTTCCACCAATTTTACTTTCCTTCACGTCATCATCATCACCAACCTA-GTAGTG 133
||||||||||||||| ||||||||||||||||||||||||||||||| ||| | ||||
Sbjct 312 TTTTCATTTCCACCATTTTTACTTTCCTTCACGTCATCATCATCACC-ACCAACCTAGTA 370
Query 134 TTGATTCTAACTCAAGAACTCCAAAAGGCTTGGTAGCACCACGAAACAGCTTGGACTTAA 193
|||||||| ||| ||||||| ||||||||||| || |||||||||||||||||||||
Sbjct 371 TTGATTCTCCCTCCAGAACTCGTAAAGGCTTGGTGGCGCCACGAAACAGCTTGGACTTAT 430
Query 194 CAGAGGAGTCTCCATTATCAACCAACTACAAGCTGGAAA-ACGAAAGCTTGAACATC-CA 251
||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||| |
Sbjct 431 CAGAGGAGTCTCCATTATCAACCAACTACAAGCTGGAAAGA-GAAGGCTTGAACATCTC- 488
Query 252 TGTGGGCAGGAAGAATTCAACACTTAGAGCTCTTCTCGTTGATACATAC-TCTA-ATAAC 309
||||||| |||| || ||||||||||||| |||||||||||||||| | || | ||||
Sbjct 489 TGTGGGCGGGAAAAAGTCAACACTTAGAGGTCTTCTCGTTGATACA-CCTTC-ACATAAT 546
Query 310 TGCAGCTCACCTCGCACCAAGTCACCAAACGTTGTGGCTAGACTCATGGGTCTTGATCTT 369
|||| || ||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 547 TGCAACTTACCTCGCACCAAGACACCGAACGTTGTGGCTAGACTCATGGGTCTTGATCTT 606
Query 370 CTTCCAGATAACTTAGACCTTAAC-AGATCATCCAA-GTATAGTGTACGAGGACATAGGC 427
||||| |||||||| || ||| || |||||| |||| | || | ||| |||||||| | |
Sbjct 607 CTTCCTGATAACTTGGAGCTT-ACTAGATCA-CCAAGGAATGGAGTAAGAGGACATCGAC 664
Query 428 TCTCCGGGAATGGCTCAGGGACAAGATCATTACCTGCGAGCCCTAGGATCTCCTCTGATT 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 665 TCTCCGGGAATGGCTCAGGGACAAGATCATTACCTGCGAGCCCTAGGATCTCCTCTGATT 724
Query 488 CCGAAAATTGCCGCCTCACTCTTCAGCTAAACAGAGAGAAGAATAAGCATGAAGAGTTTG 547
|||||||| |||||| ||||| |||||||||||||||| |||||||||||||||||||
Sbjct 725 CCGAAAATCATCGCCTCTCTCTTGAGCTAAACAGAGAGAACAATAAGCATGAAGAGTTTG 784
Query 548 GGCGTAGGAGGCTGAAAGAGTTGAAACACGATGAGCAAAGTCCACGTCCAAAACATAAT- 606
|| | ||||||||||||||||||||| ||||||||||||||| |||| | | ||| |
Sbjct 785 TACGCACGAGGCTGAAAGAGTTGAAACAAGATGAGCAAAGTCCAAGTCCCAGATATAGTG 844
Query 607 -G-G---G--AG-G---CAAATAAAAGAGAGCGTCACCACCAGAAAATTTGGTATGGATA 655
| | | || | |||| |||| |||| |||||||||||||||||||| ||||||
Sbjct 845 GGAGACAGATAGTGAAACAAACAAAAAAGAGAGTCACCACCAGAAAATTTGGCATGGATG 904
Query 656 TAACAAACTTGCTTGAGAACAAAAGGGCAGGAGCAGCAGCACAAAACAGGATTGAGCACA 715
||||||||||||||||||| ||||||||||||| ||||| | || | | | |
Sbjct 905 TAACAAACTTGCTTGAGAAGAAAAGGGCAGGAGGAGCAG--C---AC---A---A--A-A 950
Query 716 GCAGGTTTTCACAGAAAGAGAACACAACAAGCACTAATCCCACAATCGTGTTAAGACAAG 775
|||| |||||||||||||||| ||||||||||||||||| || | ||||| |||
Sbjct 951 -CAGGATTTCACAGAAAGAGAAGACAACAAGCACTAATCCTGCATTTGTGTT-----AAG 1004
Query 776 ATCACATCTCTCAGCAACCAAAAAAGGTGACTCTTTCAAAAGATTTCAAGGATAACCTGA 835
| || | | |||||||||| || ||| | | || |||| || |
Sbjct 1005 A-CA-A--TATCAGCAACCAGCAACGGT-A----AT--AACCCTTTC------AA----A 1043
Query 836 ACCGAGCAAATGAACAGCCGCTAAGACCTGGTAACGGAT-GGAAGAAAACAGAGAGTGAA 894
| ||| ||| ||||| | ||||||||| || ||||| |||| ||| |||||||| ||
Sbjct 1044 A--GAG--AATCAACAGTCACTAAGACCTATTAGCGGATGGGAA-AAAGCAGAGAGTAAA 1098
Query 895 GCAAAAGTCTCTCCTCATCCAACACCACCCAATAATAGAAACAAGCAGAG--A--T-C-A 948
||||| ||||||||||||| | | ||||||||||| ||||||||||||| | | |
Sbjct 1099 TCAAAATTCTCTCCTCATCC-A-A-CACCCAATAATCGAAACAAGCAGAGAAAGGTGCTC 1155
Query 949 ACACC---CTCAA-A-A-TCTAG---TGATTGTTGTGATCTTATAGAGAAGAAGCAATGC 999
||||| |||| | | || || | || | ||||||||| |||||||||||||||||
Sbjct 1156 ACACCAGTATCAACACACTCGAGATCTAATCGATGTGATCTTTTAGAGAAGAAGCAATGC 1215
Query 1000 AAGAAAATATCTGTAGCATCATCAGCTTTCTCTGCCACAGAACGTCCTCGGAAACAGATA 1059
|||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1216 AAGAAAATCTATGTAACATCATCAGCTTTCTCTGCCACAGAACGTCCTCGGAAACAGATG 1275
Query 1060 AAAAGAGCTGAAGAACAGGAGCGGAAGTCAGATGCGACGATATGCTCTGGTCA-AA--TG 1116
||||||||| |||||| |||| ||||| ||||||||||||||||||||||||| || ||
Sbjct 1276 AAAAGAGCTCAAGAACCGGAGAGGAAGGCAGATGCGACGATATGCTCTGGTCAGAAGATG 1335
Query 1117 TACAAATACGAGAAGAAGCTTCCTCAAGAACCGCCAAGTTCCAAATTTTACGATTCGACC 1176
||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 1336 TACAAGTACGAGAAGAAGCTTCCTCAAGAACCGTCAAGTTCCAAATTTTACGATTCGAAC 1395
Query 1177 ACCATTACTGTTACCTTAGCCAACGTAAGAGACACC-AAAAAGGATATTTCGGGGACGAA 1235
|||||| || ||| || ||||| | |||| ||| |||||| || || |||||| |||
Sbjct 1396 ACCATTTCTCCGACCATAATCAACGCAGGAGAAACCGAAAAAG-ATGTTCCGGGGATGAA 1454
Query 1236 GAAACTTGAAGAGGAAGAGGAATGGGTCGTCGCAGAGATTGAGCGGCAAATCGTAGACGC 1295
||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1455 CAAACTTGAAGAGGAAGAGGAAAGGGTCGTCTCAGAGATTGAGCGGCAAATCGTAGACGC 1514
Query 1296 ACTCGTGCAGGAAACGGTGGAAACGACGTCG-TTTACGGGTCTAAACGCACGCGCTGTTA 1354
||||||||||||||||| ||||| |||||| ||| ||||||||||||| ||||||||
Sbjct 1515 CCTCGTGCAGGAAACGGTAGAAACTACGTCGCTTTG-GGGTCTAAACGCAAACGCTGTTA 1573
Query 1355 GATTTG 1360
| ||||
Sbjct 1574 GCTTTG 1579
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69025749375
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5