BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg889656
Length=1116
Score E
Sequences producing significant alignments: (Bits) Value
AT4G25020.1 | Symbols: | D111/G-patch domain-containing protei... 1552 0.0
> AT4G25020.1 | Symbols: | D111/G-patch domain-containing protein
| chr4:12860634-12861975 REVERSE LENGTH=1342
Length=1342
Score = 1552 bits (840), Expect = 0.0
Identities = 1042/1136 (92%), Gaps = 28/1136 (2%)
Strand=Plus/Plus
Query 1 ATGAAGCTCTCTTTCTCTCTCCCTCCCAAATCCAAATCCAGAGCCAGGCTGAATTCCGAC 60
|||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||
Sbjct 44 ATGAAGCTCTCTTTCTCTCTCCCTCCCAAATCGAAATCCAGAGTTAGTCTGAATTCCGAC 103
Query 61 AGGAAAGACGGCGTCGGTGCAGGAAATCTCAAGGAGTTCGTCACTGAATTCGATCCTTCC 120
||||||||| || |||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 104 AGGAAAGACTGCATCGGTGCAGGAAATCTCAAGCAGTTCGTCACCGAATTCGATCCTTCC 163
Query 121 GAAACCCTAACCTACTCCAAACCGAAATACGTTATACCTCCCATTGAGGATCGTCGGAGG 180
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 164 GAAACCCTAACCGACTCCAAACCGAAATACGTTATACCTCCCATTGAGGATCGTCGGAGG 223
Query 181 CCCTACAAGAAGAACATCGATCTCCCGCTTCCATCCGCTTCTGGTCTCCAATTCGAGGCT 240
||||| || || ||| ||||| ||||||||||| ||||| |||||||||||||||||
Sbjct 224 TCCTAC-AG--GAGCATTGATCTACCGCTTCCATCAGCTTCAGGTCTCCAATTCGAGGCC 280
Query 241 GAGATCACTTCTGGCGATGGGCATGTC-TCTGATAACATTACGTACGGTCTGAATCTGCG 299
|||||| | ||||||||| ||| || | | ||||||||||||||||||||||||||
Sbjct 281 GAGATCCCCTCTGGCGAT-GGC---TCAGATAACAACATTACGTACGGTCTGAATCTGCG 336
Query 300 TCAGAAAGTCGAGGAC---GAGAAGCCAGAGCCTGTGGAGAAGATGTTACTGAAAAGCAT 356
|||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 337 ACAGAAAGTCGAGAACGTTGAGAAGCCAGAGCCTGTGGAGAAGATGTTACTGAAAAGCAT 396
Query 357 GAGGAAAGATTTGGAGTCACTCCCTGATGCTCCGGAATTAGAGGATTTCGAGAGCTTTCC 416
||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 397 GAGGACAGATTTGGAGTCACTCCCTGATGCTCCGGAAAAAGAGGATTTCGAGAGCTTTCC 456
Query 417 TGTGGATGGCTTTGGAGAGGCGTTACTGGCTGGGTACGGGTGGAAACCAGGCCAGGGGAT 476
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 457 TGTGGATGGCTTTGGAGAGGCGTTACTGGCTGGGTATGGGTGGAAACCAGGCCAGGGGAT 516
Query 477 TGGTCTAAAAGCTAAAGAAGATGTTAAGATTGTTGAGTACAAGAAGTGGTCTGGTAATGA 536
|||||| ||||||||||| ||||||||||||||||| ||| |||||||||||||||||||
Sbjct 517 TGGTCTTAAAGCTAAAGAGGATGTTAAGATTGTTGAATACGAGAAGTGGTCTGGTAATGA 576
Query 537 AGGATTTGGCTTCAATA--T-GGATAAAGCGAAGAAGATTATAGATGATAAACTTG--G- 590
|||||||||||| || | ||| ||||| | |||||| |||||| ||||||||| |
Sbjct 577 AGGATTTGGCTTTGGTAAATCGGACAAAGCCATGAAGATGATAGATAATAAACTTGTTGG 636
Query 591 TTCTGGAAGCCATGAGGAAGTGAAAGTGGGTTTCAACAAGATAGATAATGTTGAGAAAGA 650
||||||||||||||||||||||||||| ||| |||||||||| || ||| | ||||||||
Sbjct 637 TTCTGGAAGCCATGAGGAAGTGAAAGTTGGTATCAACAAGATTGAAAATATGGAGAAAGA 696
Query 651 TAGAGTAGTGCGTAAACGTAGTAGAGATACAGAGGGAGAGAGTCGCACTAAAGTTAGAGC 710
|||||| ||| | ||||||| |||||| ||||||||||||||||||||| |||||| |||
Sbjct 697 TAGAGTTGTGAGAAAACGTAATAGAGAAACAGAGGGAGAGAGTCGCACTGAAGTTAAAGC 756
Query 711 CTGTAAGCAGAACTATAGAGGTCAAACCAGAGAGA--AG-GT-----C-TCATGGCTTAG 761
||||||||||||||||||||||||||| ||||||| || | | |||||||||||
Sbjct 757 CTGTAAGCAGAACTATAGAGGTCAAACTAGAGAGACGAGAGAGAAGACCTCATGGCTTAG 816
Query 762 GAGTCATATAAGGGTGAGAATAATAAGCAAGGATGTGAGAGGTGGGAGATTGTATCTTAA 821
||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 817 GAGTCATATAAAGGTGAGAATAATAAGCAAGGATGTTAAAGGTGGGAGATTGTATCTTAA 876
Query 822 -AAAGGCAGTGGTGACTGATGTGGTTGGTCCAACAAGTTGTGATGTTGCTATGGATGAGA 880
|||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 877 GAAAG-CAGTGGTGACTGATGTGGTTGGGCCAACAAGTTGTGATATTGCTATGGATGAGA 935
Query 881 GGCAGGAGTTGGTTCAAGGGATTGAGCAGGAGTTTCTTGAGACTGCATTGCCCAGGAGAG 940
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |||
Sbjct 936 CGCAGGAGTTGGTTCAAGGGATTGATCAGGAGTTGCTTGAGACTGCATTGCCCAGGCGAG 995
Query 941 GAGGGTCTGTGTTGGTTCTGTCTGGTAGACATAAGGGTGTGTATGGGAAACTGGTTGAGA 1000
|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 996 GAGGGTCTGTGTTGGTTCTGTCTGGTAGACATAAGGGTGTGTATGGGAGACTAGTTGAGA 1055
Query 1001 AAGATTTGGATAAGGAAACTGGTGTGGTTTGCGATGCAGATAGCCAGGAGATGCTTCATG 1060
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1056 AAGATTTGGATAAGGAAACTGGTGTGGTTTGCGATGCAGATAGCCAGGAGATGCTTCATG 1115
Query 1061 TTAAACTTGACCAAGTCGCCGAGTACATTGGTGATCCTGCTGATATTGGGTACTGA 1116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1116 TTAAACTTGACCAAGTCGCCGAGTACATTGGTGATCCTGCTGATATTGGGTACTGA 1171
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54718594050
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5