BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg889689
Length=624
Score E
Sequences producing significant alignments: (Bits) Value
AT4G24730.1 | Symbols: | Calcineurin-like metallo-phosphoester... 651 0.0
> AT4G24730.1 | Symbols: | Calcineurin-like metallo-phosphoesterase
superfamily protein | chr4:12749278-12754096 REVERSE LENGTH=2031
Length=2031
Score = 651 bits (352), Expect = 0.0
Identities = 444/487 (91%), Gaps = 12/487 (2%)
Strand=Plus/Plus
Query 141 AGTTTTAGAAGG-TGGAAAAGATATGGTGACAATTACATGGAAGCTAAA---GTCGTCAA 196
|||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 941 AGTTTTAG-AGGCTGGAAAAGATATGGTGACAATTACATGGAAGCTAAAGTCGTCGTCAG 999
Query 197 CCAAGGTCGACATGGATGCTGCCTTCAAGACAATCCAAATCAAGCTTTGTTATGCACCGA 256
|||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1000 CCAAGGTCGACACGGATACTGCCTTCAAGACAATCCAAGTCAAGCTTTGTTATGCACCGA 1059
Query 257 TCAGCCAAGTTGATAGACCATGGCGGAAGTCTGATAACAAACTCT-CTAAGGACA-ATAG 314
||||||||||||||||||| ||||| ||| |||||||||| |||| | ||||||| | ||
Sbjct 1060 TCAGCCAAGTTGATAGACCGTGGCGTAAGACTGATAACAAGCTCTTC-AAGGACAGA-AG 1117
Query 315 CTGCCCTCACGAGATTGTGTCCAAGCCATACAACATGACCCCCCAATCACTCGATTGGAC 374
|||||||| ||||||||||||||| ||||| ||| ||||||||||||||||||||||||
Sbjct 1118 TTGCCCTCATGAGATTGTGTCCAAGGCATACGACAAGACCCCCCAATCACTCGATTGGAC 1177
Query 375 CGTCGAACGTGATATCCCCACTGGAACCTATTTCGTACGTGCCTATGGAATTGATGGAGA 434
||| || ||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1178 AATCGGACTTGATATCCCCACTGGAACCTACTTCGTACGTGCCTATGGAATCGATGGAGA 1237
Query 435 TGGCCACGAAGTAGCATACGGACAAAGCACAGATGAGGGAAGGACGACAAATCTCTTCAG 494
|||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1238 TGGCCACGAAGTTGCATACGGACAGAGCACGGATGAGGGAAGGACGACAAATCTCTTCAG 1297
Query 495 CGTTCAGGCCA---GTGGTCATCACGTGGCGCTCGACATAGCATCCATATTTTTCAGTGT 551
||||| |||| ||||||||||||||| ||| ||||||||||||| ||||||||| ||
Sbjct 1298 TGTTCATGCCATAAGTGGTCATCACGTGGGGCTAGACATAGCATCCACATTTTTCAGCGT 1357
Query 552 CTTCTCCGTTGTTTCTGTGTTTGTCGTCTTTGTCATGGAGAAGAGGAAGGCCAAGTTTGA 611
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 1358 CTTCTCCGTTGTTTCTCTGTTTGTCTTCTTTGTCATGGAGAAGAGGAAGGCCAAGTTAGA 1417
Query 612 GCAAAGG 618
|||||||
Sbjct 1418 GCAAAGG 1424
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30090254053
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5