BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg889700
Length=2778
Score E
Sequences producing significant alignments: (Bits) Value
AT4G24580.1 | Symbols: REN1 | Rho GTPase activation protein (Rh... 2255 0.0
> AT4G24580.1 | Symbols: REN1 | Rho GTPase activation protein (RhoGAP)
with PH domain | chr4:12687879-12694248 REVERSE LENGTH=2802
Length=2802
Score = 2255 bits (1221), Expect = 0.0
Identities = 1446/1549 (93%), Gaps = 38/1549 (2%)
Strand=Plus/Plus
Query 1243 GAAGGTTCCTTGTCACCCGGCTTATACTCTGACTCAGAAGAGAGTGGTAGTGGGACAGAG 1302
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 1279 GAAGGTTCCTTGTCACCCGGCCTGTACTCTGACTCAGAAGAGAGTGGTAGTGGGACAGAG 1338
Query 1303 GAGGGATCTGATGATGAAGAGTATGATGATGACGAAGATGATGGCACACAGGGATCTGAT 1362
||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 1339 GAGGGATCTGATGATGAAGAGTATGATGATGAC---GATGATGGCTCACAGGGATCTGAG 1395
Query 1363 GACTACACAGATGAGGAAGAGGACCTTGAAAATGAATCTAATGGATCATACAGTGAGAGT 1422
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1396 GACTACACGGATGAGGAAGAGGACCTTGAAAATGAATCTAATGGATCCTACAGTGAGAGT 1455
Query 1423 GCCGCCTCAGAAGACAAATATGCAGACAGCATTGATCCTGACGACCATAAG------G-- 1474
|||||||||||||| |||||||||||||||||||||||||| || |||||| |
Sbjct 1456 GCCGCCTCAGAAGATAAATATGCAGACAGCATTGATCCTGATGATCATAAGATAAATGAT 1515
Query 1475 ----CACGCCCTGAACCAAAATCCCCAAAAGGAAGTAAGGAGCCTAAGAAGCTTTTATCT 1530
| || ||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1516 AATTTAAGCACTGAATCAAAATCCCCAAAAAGAAGTAAGGAGCCTAAGAAGCTTTTATCT 1575
Query 1531 GGCTCCAGACGATCTTCTCTACCACGACATGATGACGGTAAAAAGGATGAGGATATTGTG 1590
||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||| |||
Sbjct 1576 GGCTCCAGACGATCTTCACTACCCCGACATGATGACGGCAAAAAGGATGAGGATATCGTG 1635
Query 1591 GTTAAGGGAGCTGATAATACAGAGGTAAAGGATGTTGTAGAGGTCTCGACAACTGAGGAT 1650
|||||||||| | |||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 1636 GTTAAGGGAGTTAATAATACAGAGGTAAAGGCTGTTGTAGAGGTCTCGACAAGTGAGGAT 1695
Query 1651 AAAG-ATTCGTCAACATCAGATGTGGCATCTGACACTCAGAAACCGTCAAAGTTATCCGA 1709
||| |||| ||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1696 -AAGAATTCATCAACGTCAGATGTGGCATCTGACACTCAGAAACCGTCTAAGTTATCCGA 1754
Query 1710 TGCACCGGGAGGAAGTAAAAGGCACTGGGGCCGTACCCCTGGGAAGAAAAACCTGTCAAT 1769
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1755 TGCACCGGGAGGAAGTAAAAGGCACTGGGGCCGTACCCCTGGGAAGAAAAACTTGTCAAT 1814
Query 1770 GGAATCTATTGATTTCTCAGCGGAAGTGGACGAGGACAATGCTGACATTGAGCGACTTGA 1829
|||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 1815 GGAATCTATTGATTTCTCAGTGGAAGTGGACGAGGACAATGCTGACATTGAGAGACTTGA 1874
Query 1830 ATCAACCAAATTAGAGCTGCAAAACAGAATTACAGAAGAGGTTAAAAGCAATGCAGTTCT 1889
|||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 1875 GTCAACCAAATTAGAGCTGCAAAGCAGAATTACAGAAGAGGTAAAAAGCAATGCAGTTCT 1934
Query 1890 ACAGGCTAGTTTGGAGCGACGGAAGAAGGCTTTGTACGGGCGGCGCCAGGCTCTAGAGCA 1949
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1935 ACAGGCTAGTTTGGAGCGACGGAAGAAGGCTTTGTACGGGCGGCGCCAAGCACTAGAGCA 1994
Query 1950 AGATGTGGGAAGACTACAAGAACAGTTGCAGCAAGAGAGAGATAGGAAATTAGCTCTGGA 2009
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1995 AGATGTGGGAAGACTACAAGAACAGTTGCAGCAAGAGAGAGACAGGAAATTAGCTCTGGA 2054
Query 2010 AACAGGACTGAACATGTCAAAAGGGAATCAACCTATTCCAGAAACAATCGATGAAAATCT 2069
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2055 AACAGGACTGAACATGTCAAAAGGGAATCAACCTATTCCAGAAACAATCGATGAAAATTT 2114
Query 2070 GAAGAAAGATCTGCAAGACGTAGCTCAGGCGGAGGCTGATATTGCCAATTTAGAACATAA 2129
|||||||||||||||||| |||||||| |||||||||||||||||||| || ||||||||
Sbjct 2115 GAAGAAAGATCTGCAAGAGGTAGCTCAAGCGGAGGCTGATATTGCCAAGTTGGAACATAA 2174
Query 2130 GGTTGATGATCTTGAAAATAGGCTTGGTCAACATGACGGAAAAGCCTCTGGTTCCACGCA 2189
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 2175 GGTTGATGATCTTGAAAATAGGCTTGGTCACCATGACGGAAAAGCCTCTGGTTCTACGCA 2234
Query 2190 TGGTGCCAGCAAAGACTCTCGGAAAATGCCAGAGCACAGTGCAAAGATGAAGGAGAAACA 2249
| ||||||||||||| ||||||||| |||||||||||| ||| |||||||||||||||||
Sbjct 2235 TAGTGCCAGCAAAGAATCTCGGAAATTGCCAGAGCACAATGCGAAGATGAAGGAGAAACA 2294
Query 2250 AAAAGATACTGAAGCAGCCTCTACTCACATTTCTGAAAGGTCAACGTCCAAGACGGGTAA 2309
||||||||||||||||||||||||||||||||||||||| |||||||||||| | |
Sbjct 2295 AAAAGATACTGAAGCAGCCTCTACTCACATTTCTGAAAGATCAACGTCCAAG--G---A- 2348
Query 2310 CATATTGCAGGATGGGCAAGGGGCTGCAAGAGAAAATGAGACAGAGAAGCAACATGATTC 2369
| | || |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2349 --T---G--GG-----CAAGGGGCTGCAAGAGAAAATGAGACAGAGAAGCAACAGGATTC 2396
Query 2370 ACGGAGCAAAAGCTCGCAGCACGAAACATCACGTGGCAGCTCAAAACTGGTGGGCATGTC 2429
|||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||||
Sbjct 2397 ACGGAGCAAAAGCTCGCAACAAGAAACATCACGTGGCAGCTCAAAACTGGTGGGCTTGTC 2456
Query 2430 GAAGAGGTCTGGCACAAAGGGAGAGGGAAGCACGACAACAACTTCTGCGCTTTCCAAATT 2489
|||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 2457 AAAGAGGTCTGGCACAAAGGGAGAGGGAAGCACAACAACAACTTCTGCACTTTCCAAATT 2516
Query 2490 GACAATGCGACTCAACTTCCTAAAGGAGAGACGAAGTCAGATCGCGAACGAGCTCCAAAA 2549
||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 2517 GACAATGAGACTCAACTTCCTCAAGGAGAGACGTAGTCAGATCGCGAACGAGCTCCAAAA 2576
Query 2550 CATGGACAAAGGAAAAACATTAGGGCAATCCAGTCCATCCTCGGGGCAAAACCGTGTATC 2609
|||||||||||||||||| |||||||| |||||||| ||||||| ||||||||||||||
Sbjct 2577 CATGGACAAAGGAAAAACCCTAGGGCAACCCAGTCCAACCTCGGGACAAAACCGTGTATC 2636
Query 2610 AGAGGAAACTGAAAAAGGATCAGGGTCGAACCAGGATTCAGACAGCAGCAAACTACAGAG 2669
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2637 AGAGGAAACTGAAAAAGGATCAGGGTCGAACCAGGATCCAGACAGCAGCAAACTACAGAG 2696
Query 2670 CCCTCACATTCTTGACAGAGGAAGATCCGAGAACGGAGGAGGAGACAGAGGCAGAGGATC 2729
||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 2697 CCCTCACATTCTTGACAGAGGAAGATCCGAGAACGGAGGAG-A--CAGAGGCAGAGGATC 2753
Query 2730 ATCTGGAGGAAGCCATCCCAACACTACACCAAGGACCTTCTCGAGATGA 2778
||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 2754 ATCTGGAGGAAACCATCCCAACACTACACCAAGGACCTTCTCCAGATGA 2802
Score = 2069 bits (1120), Expect = 0.0
Identities = 1208/1248 (97%), Gaps = 15/1248 (1%)
Strand=Plus/Plus
Query 1 ATGGCTAACAAAAACGCAGAATCATCTTCACAGcctcctcctcctcctcctcAGGTGCAG 60
||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 1 ATGGCTAACAAAAACGCAGAATCATCTTCACAG---------CCTCCTCCTCATGTGCAG 51
Query 61 CCAAACCAAC-A-A-CAGCAGCA---ACCGATTGCTAATGAACAAGAGCAGGAGCCTCAT 114
|||||||||| | | |||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 52 CCAAACCAACAACAGCAGCAGCAGCCACCGATTGCCAATGAACAAGAGCAGGAGCCTCAT 111
Query 115 GGTGACACCTGTAGCATTCCTCCTGCGCAGTCTGGAAACACAGACTCGCGTTCCCGTGCT 174
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 112 GGTGACACCTGCAGTATTCCTCCTGCGCAGTCTGGAAACACAGACTCGCGTTCCCGTGGT 171
Query 175 GGCAACACGGTTTTCAAGAGTGGACCGCTATCTATATCTTCAAAAGGGATTGGGTGGACA 234
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 172 GGCAACACGGTTTTCAAGAGTGGACCGCTATCTATATCTTCAAAAGGGATTGGCTGGACA 231
Query 235 TCATGGAAGAAAAGATGGTTTATTTTGACTCGTACTTCACTGGTTTTCTTTCGAAGTGAC 294
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 232 TCATGGAAGAAAAGATGGTTTATTTTGACGCGTACTTCACTAGTTTTCTTTCGAAGTGAC 291
Query 295 CCGAGTGCAGTCCAACAGAAGGGTAGTGAGGTCAATTTGACCCTTGGGGGAATTGATCTT 354
||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 292 CCGAGTGCAGTCCAACAGAAGGGCAGTGAGGTCAATCTGACCCTTGGGGGAATTGATCTC 351
Query 355 AACAATTCAGGCAGTGTGGTTGTTAAGGCAGACAAGAAGCTGTTGACTGTTCTCTTCCCC 414
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 352 AACAATTCAGGCAGTGTGGTTGTTAAGGCGGACAAGAAGCTGTTGACTGTTCTCTTTCCC 411
Query 415 GATGGTCGTGATGGACGGGCCTTTACACTCAAGGCTGACACTATGGAGGATCTACACGAG 474
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 412 GATGGTCGTGATGGACGGGCCTTTACACTTAAGGCTGACACTATGGAGGATCTACACGAG 471
Query 475 TGGAAAGCTGCTCTGGAAAACGCTCTAACACAAGCACCTAGTGCTTCCCATGTTATGGGT 534
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 472 TGGAAAGCTGCTCTGGAAAACGCTCTGACACAAGCACCTAGTGCTTCCCATGTTATGGGT 531
Query 535 CAAAATGGTATTTTCAGGAATGATCATGCAGATCCTGCTGTTGGTGTTGATGAAAAGAAA 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 532 CAAAATGGTATTTTCAGGAATGATCATGCAGATCCTGCTGTTGGTGTTGATGAAAAGAAA 591
Query 595 GATGAGACACCAACAAAATCAACTGTCCTTGGAAGACCAGTATTACTTGCTCTAGAAGAT 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 592 GATGAGACACCAACAAAATCAACTGTCCTTGGAAGACCAGTATTACTTGCTCTAGAAGAT 651
Query 655 GTTGATGGAGCTCCATCTTTCTTGGAAAAGGCCCTTAGATTTGTTGAAAATCATGGAGTC 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 652 GTTGATGGAGCTCCATCTTTCTTGGAAAAGGCCCTTAGATTTGTTGAAAATCATGGAGTC 711
Query 715 AGGATAGAAGGAATTTTGAGACAAGCTGCTGATGTTGATGATGTTGAACACCGGATTCGC 774
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 712 AGGATAGAAGGAATCTTGAGACAAGCTGCTGATGTTGATGATGTTGAACACCGAATTCGC 771
Query 775 GAATATGAGAAAGGAAAAAATGAGTTCAGTCCTGAGGAGGATGCGCATGTTATTGCTGAT 834
|||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||
Sbjct 772 GAATATGAGAAAGGAAAAAATGAGTTCAGTCCCGAGGAGGATGCTCATATTATTGCTGAT 831
Query 835 TGCCTTAAGTATTTTCTCAGAGAGTTGCCTTCCTCTCCAGTGCCTGCATCTTGTTGCAAC 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 832 TGCCTTAAGTATTTTCTCAGAGAGTTGCCTTCCTCTCCAGTGCCTGCATCTTGTTGCAAC 891
Query 895 GCCCTTCTGGAAGCTTGCCGTACTGACCGTGGCAATAGGGTCAATGCTATGCGGGCAGCA 954
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 892 GCCCTTCTGGAAGCTTGCCGTACTGACCGTGGCAATAGGGTAAATGCTATGCGGGCAGCA 951
Query 955 ATCTGTGAATCATTCCCTGAACCAAATCGTCGCCTATTGCAAAGAATCCTGATGATGATG 1014
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 952 ATCTGTGAATCATTCCCTGAACCAAATCGTCGCCTATTGCAAAGAATCCTGATGATGATG 1011
Query 1015 CAGACTGTAGCCTCTAACAAAACAGTGAACCGGATGAACACAAACGCCGTTGCAGCTTGT 1074
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1012 CAAACTGTAGCCTCTAACAAAACTGTGAACCGGATGAACACAAACGCCGTTGCAGCTTGT 1071
Query 1075 ATGGCACCTTTACTTCTTCGACCCCTTCTGGCTGGTGACTGTGAAATTGAAAATGATTTT 1134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1072 ATGGCACCTTTACTTCTTCGACCCCTTCTGGCTGGTGACTGTGAAATTGAAAATGATTTT 1131
Query 1135 GATGTCGGCGGTGATGGTTCTATGCAACTTCTGCAAGCAGCTGCTGCAGCGAATCATGCC 1194
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1132 GATGTCGGCGGTGATGGTTCTATGCAACTTCTGCAAGCAGCTGCTGCAGCGAACCATGCT 1191
Query 1195 CAGGCTATAGTGATAACATTATTAGAAGAATATGAAAGTATATTTGGA 1242
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1192 CAGGCTATAGTGATAACATTATTAGAAGAATATGAAAGTATATTTGGA 1239
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 138009260193
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5