BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg889705
Length=1560
Score E
Sequences producing significant alignments: (Bits) Value
AT4G24530.1 | Symbols: | O-fucosyltransferase family protein |... 2571 0.0
> AT4G24530.1 | Symbols: | O-fucosyltransferase family protein
| chr4:12667358-12670013 REVERSE LENGTH=1926
Length=1926
Score = 2571 bits (1392), Expect = 0.0
Identities = 1506/1562 (96%), Gaps = 4/1562 (0%)
Strand=Plus/Plus
Query 1 ATGCTCCAAATGAAGCAGCCATTACAGAACCTTAATCAGTCGCAGAGGACAGCCTTAGCT 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 301 ATGCTCCAAATGAAGCAGCCATTACAGAACCTTAATCAGTCGCAGAAGACAGCTTTAGCT 360
Query 61 GGTGTTTTCGtcctccttctcccgattctctctccgaatctcttccgccctcttggtcgc 120
||||||||||| |||||| |||||||||||| ||||||||||||| ||||||||||||||
Sbjct 361 GGTGTTTTCGTGCTCCTTTTCCCGATTCTCTATCCGAATCTCTTCAGCCCTCTTGGTCGC 420
Query 121 gcctctccttccctcttctccgAATGGAATGCCCCAAGGCCTAGACATTTGCGCCTACTC 180
||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 421 GCCTCTCCTTCTCTCTTCTCCGAATGGAATGCTCCAAGGCCTAGACATTTGAGCCTACTC 480
Query 181 CAAGGCGCTCTTGATCGACAAATTTCGATCAGACAACAGGTTGAGTTGTGGTCTCCCTTG 240
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 481 CAAGGCGCTCTTGATCGACAAATTTCGATCAGACAACAAGTTGAGTTATGGTCTCCCTTG 540
Query 241 GCAGATCAAGGTTGGAAGCCTTGCACTGAATCTTATAGAGGCG-TTCCCTTGCCAGAGAA 299
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 541 GCAGATCAAGGTTGGAAGCCTTGCACTGAATCTTATAGAGGCGCTT-CCTTGCCAGAGAA 599
Query 300 GTCTCATGGGTTTCTTCAGGTGTTCCTTGACGGCGGACTAAATCAACAAAGAATGGGAAT 359
|||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 600 GTCTGAAGGGTTTCTTCAGGTTTTCCTTGACGGCGGACTAAATCAACAAAGAATGGGAAT 659
Query 360 ATGTGATGCTGTTGCTGTTGCCAAGATAATGAACGTTACACTCGTGATTCCACGCCTTGA 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 ATGTGATGCTGTTGCTGTTGCCAAGATAATGAACGTTACACTCGTGATTCCACGCCTTGA 719
Query 420 AGTAAATCCTGTTTGGCAAGATTCAAGTTCCTTCACAGATATATTTGATTTGGATCACTT 479
||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 720 AGTAAATACTGTTTGGCAAGATTCAAGTTCTTTCACAGATATATTTGATTTGGATCACTT 779
Query 480 TATAAGTGTCCTTAAAGACGAGGTGCGGATTGTTAGGGAGCTTCCAATACAGTATGCCTG 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TATAAGTGTCCTTAAAGACGAGGTGCGGATTGTTAGGGAGCTTCCAATACAGTATGCCTG 839
Query 540 GAGCACTCGTGATTATTACGCCACAGGTATCCGAGCTACTAGGATTAAGACTGCGCCTGT 599
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 840 GAGCACTCGTGATTATTACGCTACAGGTATTCGAGCTACTAGGATTAAGACTGCGCCTGT 899
Query 600 TCACGCTTCAGCAGAGTGGTATTTGGAAAATGTCTTACCTGTTATCCAGAGTTATGGCAT 659
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 900 TCACGCTTCAGCAGAGTGGTATTTGGAAAATGTCTTACCTATTATCCAGAGTTATGGCAT 959
Query 660 TGCTGCTGTTGCTCCATTCTCTCACCGTTTGGCATTTGACAATTTGCCTGAAAGCATACA 719
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 960 TGCTGCTGTTGCTCCATTCTCTCACCGTTTGGCATTTGACAATTTGCCTGAAAGTATACA 1019
Query 720 GCGGTTACGCTGTAAAGTGAATTTTGAAGCATTAAACTTTGTTCCTCACATTCGGGAGCT 779
|||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||
Sbjct 1020 GCGGTTACGCTGTAAAGTAAATTTTGAAGCATTAAACTTTGTTCCTCATATTCGTGAGCT 1079
Query 780 AGGGGACGCTCTTGTGCATCGACTCAGATATCCTCCTTCCAGCTCTCAAACATCAGGAAC 839
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1080 AGGGGACGCTCTTGTGCATCGACTCAGAAATCCTCCTTCCAGCTCTCAAACATCAGGAAC 1139
Query 840 TATGGATCCGACAGACAGAATAAACACCATTGTAAAAGCTGGTGCTGGAAAGTTTGCAGT 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 TATGGATCCGACAGACAGAATAAACACCATTGTAAAAGCTGGTGCTGGAAAGTTTGCAGT 1199
Query 900 GCTTCATCTTCGTTTCGATAAAGATATGGCTGCTCATTCAGGCTGTGACTTTGAAGGTGG 959
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1200 GCTTCATCTTCGTTTCGATAAAGACATGGCTGCTCATTCAGGCTGTGACTTTGAAGGTGG 1259
Query 960 CAAAGTAGAAAAACTGGCGCTGGCAAAATACCGCCAGGTGATCTGGCAGGGACGGGTCTT 1019
||||| |||||||||||||||||||||||| ||||||||||||||||| ||| |||||||
Sbjct 1260 CAAAGCAGAAAAACTGGCGCTGGCAAAATATCGCCAGGTGATCTGGCAAGGAAGGGTCTT 1319
Query 1020 AAATTCCCAGTTCACAGATGAGGAGCTAAGAAACAAAGGGCGCTGCCCGTTGACACCAGA 1079
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1320 AAATTCACAGTTCACAGATGAGGAGCTAAGAAACAAAGGTCGCTGCCCGTTGACACCAGA 1379
Query 1080 AGAGATTGGTTTACTGCTTTCAGCTTTGGGTTTCAGTAACAATACCCGTCTCTATCTAGC 1139
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 AGAGATTGGTTTACTGCTGTCAGCTTTGGGTTTCAGTAACAATACCCGTCTCTATCTAGC 1439
Query 1140 TTCACACCAGGTTTACGGAGGAGAGGCAAGAATCTCGACCCTGCGTAAACTGTTCCCTGG 1199
||||||||||||||||||||||| ||||||||||| || ||||||||||||||||| ||
Sbjct 1440 GTCACACCAGGTTTACGGAGGAGAAGCAAGAATCTCAACGCTGCGTAAACTGTTCCCCGG 1499
Query 1200 GATTGAAAACAAGAAAAGCCTAGCCTCTGCGGAGGAACTAGCTGATGTACAAGGGAAAGC 1259
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1500 GATTGAAAACAAGAAAAGCCTAGCCTCTGCTGAGGAACTAGCTGATGTACAAGGGAAAGC 1559
Query 1260 ATCTCTAATGGCTGCAGTCGATTATTACGTGAGTATGAAGAGCGACATCTTCATCTCAGC 1319
||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1560 TTCTCTGATGGCTGCAGTCGATTACTACGTGAGTATGAAGAGCGACATCTTCATCTCTGC 1619
Query 1320 ATCTCCCGGGAACATGCACAACGCATTGCTGGCACATAGAGCCTACTTGAATCTTAAAAC 1379
||||||||||||||||||||||||||| | ||| |||||||||||||||||||| |||||
Sbjct 1620 ATCTCCCGGGAACATGCACAACGCATTACAGGCGCATAGAGCCTACTTGAATCTCAAAAC 1679
Query 1380 CATAAGACCCAACATGATACTGTTAGGACAGGT-TTTCGTGAACAAGAGCTTAGAGTGGT 1438
|||||||||||||||||||||||||||||| || ||| ||||||||||||||||| ||||
Sbjct 1680 CATAAGACCCAACATGATACTGTTAGGACAAGTCTTT-GTGAACAAGAGCTTAGATTGGT 1738
Query 1439 CAGAGTTTGAAGGCGCAGTAGTGAATGGGCACAAGAACAGGCAAGGCCAGCTTCGTCTAC 1498
||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 1739 CAGAGTTTGAAGGAGCAGTAATGAATGGGCACAAAAACAGGCAAGGCCAGCTTCGTCTAC 1798
Query 1499 GCAAACAGAAACAGTCTATTTACACTTATCCAGCTCCTGATTGCATGTGTAAAGCAGCTT 1558
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1799 GCAAACAGAAACAGTCTATTTACACTTATCCAGCTCCTGATTGCATGTGTAAAGTAGCTT 1858
Query 1559 AG 1560
||
Sbjct 1859 AG 1860
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77007636030
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5