BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg889756
Length=1041
Score E
Sequences producing significant alignments: (Bits) Value
AT4G24060.1 | Symbols: | Dof-type zinc finger DNA-binding fami... 1690 0.0
AT2G46590.2 | Symbols: DAG2 | Dof-type zinc finger DNA-binding ... 222 5e-57
AT3G61850.4 | Symbols: DAG1 | Dof-type zinc finger DNA-binding ... 187 2e-46
> AT4G24060.1 | Symbols: | Dof-type zinc finger DNA-binding family
protein | chr4:12503782-12505646 FORWARD LENGTH=1446
Length=1446
Score = 1690 bits (915), Expect = 0.0
Identities = 1002/1042 (96%), Gaps = 14/1042 (1%)
Strand=Plus/Plus
Query 1 ATGGATACGGCTCAATGGCCACAGGAGATTGTAGTGAAACCCTTGGAAGAAATAGTAACA 60
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 189 ATGGATACGGCTCAGTGGCCACAGGAGATTGTAGTGAAGCCCTTGGAAGAAATAGTAACA 248
Query 61 AACACACGCCCAAAGCCGCAACCGCAACCGCTTCAACCGCAGCAGCCATCGACGGCGGGT 120
|||||| ||||||||||||||||||||||||||||||||||||||||| || ||| ||||
Sbjct 249 AACACATGCCCAAAGCCGCAACCGCAACCGCTTCAACCGCAGCAGCCACCGTCGGTGGGT 308
Query 121 GGAGAGAGGAAGGCAAGGCCAGAAAAGGACCAAGCTGTAAACTGTCCGAGATGTAACTCA 180
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 309 GGAGAGAGGAAGGCAAGGCCAGAAAAGGATCAAGCTGTAAACTGTCCGAGATGTAACTCA 368
Query 181 ACCAACACAAAGTTTTGTTACTACAACAATTATAGTTTGACGCAACCAAGATACTTCTGC 240
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 369 ACCAACACAAAGTTTTGTTACTACAACAATTATAGTTTGACGCAGCCAAGATACTTCTGC 428
Query 241 AAAGGTTGTAGAAGGTATTGGACCGAAGGCGGTTCGCTTAGGAACATTCCTGTTGGCGGT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 429 AAAGGTTGTAGAAGGTATTGGACCGAAGGCGGTTCGCTTAGGAACATTCCTGTTGGCGGT 488
Query 301 GGCTCAAGAAAGAACAAGAGATCTCACTCTTCTTCTTCTGATATTAGTAACAACAATCAC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 489 GGCTCAAGAAAGAACAAGAGATCTCACTCTTCTTCTTCTGATATTAGTAACAA---TCAC 545
Query 361 TCGGATTC-AGCACAACCAGCTACAAAGAAACATCTCTCTGATCATCACCATCACCTCAT 419
|||||||| | ||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 546 TCGGATTCTA-CACAACCAGCTACAAAGAAGCATCTCTCTGATCATCACCACCACCTCAT 604
Query 420 GAGCATGTCTCAACAAGGTTTGACCGGTCAAAACCCTAAATTCCTCGAGACGACCCAACA 479
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 605 GAGCATGTCTCAACAAGGTTTGACCGGTCAAAACCCTAAATTCCTTGAGACGACCCAACA 664
Query 480 AGATCTCAATTTAGGTTTTCCACCACATGGGATGATCAGGACCAACTTCACTGACCTCAT 539
||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 665 AGATCTCAATTTAGGTTTTTCACCACATGGGATGATTAGGACCAACTTCACTGACCTCAT 724
Query 540 CCATAACATTGGcaacaacagcaacaacaccaacaagagcaacaacaataacaaTCCATT 599
||| |||||||||||||||| | ||||| | ||||||||||||||||||||||||
Sbjct 725 CCACAACATTGGCAACAACA-C--CAACA--A----GAGCAACAACAATAACAATCCATT 775
Query 600 GCTTGTTTCTTCATGTTCTGCCATGGCTACTTCTTCTCTGGATCTCATAAGAAACAATAG 659
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 GATTGTTTCTTCATGTTCTGCCATGGCTACTTCTTCTCTGGATCTCATAAGAAACAATAG 835
Query 660 TAATAACGGGAATTCATCAAATTCTTCCTTTATGGGATTTCCAGTTCATAATCAAGACCC 719
||| || |||||||| |||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 836 TAACAATGGGAATTCTTCAAATTCTTCCTTCATGGGATTTCCAGTTCATAATCAAGATCC 895
Query 720 AGCATCAGGAGGGTTTTCAATGCAAGATCATTACAAGCCTTGCAACACAAACACCACACT 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 AGCATCAGGAGGGTTTTCAATGCAAGATCATTACAAGCCTTGCAACACAAACACCACACT 955
Query 780 TCTAGGGTTTTCATTAGATCATCATCAGAATAATGGGTTTCATGGAGGGTTTCAAGGAGG 839
|||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 956 GCTAGGGTTTTCATTAGATCATCATCATAATAATGGATTTCATGGAGGGTTTCAAGGAGG 1015
Query 840 TGAAGAAGGTGGAGAAGGCGGTGATGATGTGAATGGAAGGCACTTGTTTCCTTTTGAGGA 899
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 AGAAGAAGGTGGAGAAGGTGGTGATGATGTGAATGGAAGGCACTTGTTTCCTTTTGAGGA 1075
Query 900 TTTGAAATTGCCAGTTTCTTCTTCATCAGCAACAATTAATGTCGACATTAATGAACATCA 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 TTTGAAATTGCCAGTTTCTTCTTCATCAGCAACAATTAATGTCGACATTAATGAACATCA 1135
Query 960 GAAGCGAGGAAGTGGTAGTGATGCAGCTGCTACGTCTGGTGGGTATTGGACTGGGATGTT 1019
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1136 GAAGCGAGGAAGCGGTAGTGATGCAGCTGCTACGTCTGGTGGGTATTGGACTGGGATGTT 1195
Query 1020 GAGTGGAGGATCATGGTGCTAA 1041
||||||||||||||||||||||
Sbjct 1196 GAGTGGAGGATCATGGTGCTAA 1217
> AT2G46590.2 | Symbols: DAG2 | Dof-type zinc finger DNA-binding
family protein | chr2:19133040-19134905 FORWARD LENGTH=1236
Length=1236
Score = 222 bits (120), Expect = 5e-57
Identities = 196/231 (85%), Gaps = 11/231 (5%)
Strand=Plus/Plus
Query 112 ACGGCGG--GTGG-AGAGAGGAAGGCAAGGCCAGAAAAGGACCAAGCTGTAAACTGTCCG 168
||||||| |||| |||||||| ||||| ||| || | || || | |||| |||||
Sbjct 322 ACGGCGGTTGTGGCGGAGAGGAAAGCAAGACCACAAGA-GA--AA-C--TAAATTGTCCA 375
Query 169 AGATGTAACTCAACCAACACAAAGTTTTGTTACTACAACAATTATAGTTTGACGCAACCA 228
||||| ||||||||||||||||||||||||||||||||||| |||||| | || ||||||
Sbjct 376 AGATGCAACTCAACCAACACAAAGTTTTGTTACTACAACAACTATAGTCTCACACAACCA 435
Query 229 AGATACTTCTGCAAAGGTTGTAGAAGGTATTGGACCGAAGGCGGTTCGCTTAGGAACATT 288
||||||||||||||||||||| ||||||||||||||||||| || || |||||||| ||
Sbjct 436 AGATACTTCTGCAAAGGTTGTCGAAGGTATTGGACCGAAGGTGGATCTCTTAGGAATGTT 495
Query 289 CCTGTTGGCGGTGGCTCAAGAAAGAACAAGAGATC-TCACTCTTCTTCTTC 338
||||| || || |||||||||||||||||||||| || || ||||||||
Sbjct 496 CCTGTGGGAGGAAGCTCAAGAAAGAACAAGAGATCATCT-TCATCTTCTTC 545
> AT3G61850.4 | Symbols: DAG1 | Dof-type zinc finger DNA-binding
family protein | chr3:22895268-22897488 FORWARD LENGTH=1540
Length=1540
Score = 187 bits (101), Expect = 2e-46
Identities = 145/167 (87%), Gaps = 0/167 (0%)
Strand=Plus/Plus
Query 157 GTAAACTGTCCGAGATGTAACTCAACCAACACAAAGTTTTGTTACTACAACAATTATAGT 216
||||| ||||| ||||| |||||||| ||||||||||| ||||| |||||||| || |||
Sbjct 447 GTAAATTGTCCAAGATGCAACTCAACAAACACAAAGTTCTGTTATTACAACAACTACAGT 506
Query 217 TTGACGCAACCAAGATACTTCTGCAAAGGTTGTAGAAGGTATTGGACCGAAGGCGGTTCG 276
| |||||||||||||||||||||||||||||| ||||||||||||||||||| || ||
Sbjct 507 CTCACGCAACCAAGATACTTCTGCAAAGGTTGTCGAAGGTATTGGACCGAAGGTGGCTCT 566
Query 277 CTTAGGAACATTCCTGTTGGCGGTGGCTCAAGAAAGAACAAGAGATC 323
||| | ||| | || || || ||| ||||||||||||||||||||||
Sbjct 567 CTTCGTAACGTCCCAGTCGGAGGTAGCTCAAGAAAGAACAAGAGATC 613
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51037893352
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5