BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg889767
Length=612
Score E
Sequences producing significant alignments: (Bits) Value
AT4G23960.1 | Symbols: | F-box family protein | chr4:12444765-... 390 7e-108
AT4G23970.1 | Symbols: | unknown protein; Has 2 Blast hits to ... 281 4e-75
> AT4G23960.1 | Symbols: | F-box family protein | chr4:12444765-12445323
FORWARD LENGTH=369
Length=369
Score = 390 bits (211), Expect = 7e-108
Identities = 305/346 (88%), Gaps = 24/346 (7%)
Strand=Plus/Plus
Query 43 ATGATCGAACAATTGTTTCCGGAGGTTACAAGCTACGCGCTCAGATACTTGGATTACTCA 102
|||||||| ||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 1 ATGATCGAGCAATTGTTTCCGGAGGTTACATGCTACGCGCTCAGATACTTAGATTACTCA 60
Query 103 AGTCTCTGCCAGTTATCAATGACGAGTTCCTCCATGAGAAAGGCCGCTAATAACGATGAC 162
|||||||||||||||||||||||||||||||||||||||||| | || ||| |||||| |
Sbjct 61 AGTCTCTGCCAGTTATCAATGACGAGTTCCTCCATGAGAAAGACAGCGAATGACGATGTC 120
Query 163 CTCTGGAGATCCCTTTATTACC--------A-A-AGGAAACAAATGGTGGAACCCCGGTT 212
||||||||| ||||||||| || | | ||||||||||||||||||| ||||||
Sbjct 121 CTCTGGAGAGCCCTTTATTTCCAAGAATTTACAGAGGAAACAAATGGTGGAACTCCGGTT 180
Query 213 AA----T----GGC-TTACTATGCAGTTACTAAACAAGTCATGGA-TGTGAATTATGAAT 262
|| | ||| || || ||||||||||||||||||||| || ||||||| || |||
Sbjct 181 AATGGGTGGAAGGCGTT-CTTTGCAGTTACTAAACAAGTCAT-GACTGTGAATGATAAAT 238
Query 263 TCTTTAGCATCCTCGATTCGAGGTCACTTCCTAGAATGACTAGTTTCTGGCTCAACTCTG 322
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 239 TCTTTAGCATCCTCGATTCGAGGTCACTTCCCAGAATGACTAGTTTATGGCTCAACTCTG 298
Query 323 ACTATGTCAAGTGCTTCAACGGCAT-TGGTGAACTCTTCTCCGGGT 367
||||||||||||||||||||||| | ||||||||||||| ||||||
Sbjct 299 ACTATGTCAAGTGCTTCAACGGC-TCTGGTGAACTCTTCACCGGGT 343
> AT4G23970.1 | Symbols: | unknown protein; Has 2 Blast hits to
2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr4:12445378-12445680 REVERSE LENGTH=303
Length=303
Score = 281 bits (152), Expect = 4e-75
Identities = 216/245 (88%), Gaps = 12/245 (5%)
Strand=Plus/Minus
Query 365 GGTTTGACGCAGTGATGCAAAGATGGGAGTTCTGTTTCGACAACTGGGAGATAGGGTTTC 424
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 260 GGTTTGACGCAGTGATGCAAAGATGGGACTTCTGTTTCGACAACTGGGAGATAGGGTTTC 201
Query 425 CATTGGAGGCTC-TTGAAGT-GCGGACACGGATTCTG-GACAGTGTGGCTTGGGGCACCA 481
|| | | | || ||||| | | |||||||||||||| | ||| |||||||||| | |||
Sbjct 200 CAACGTATG-TCATTGAA-TCGAGGACACGGATTCTGAG-CAGCGTGGCTTGGGTCTCCA 144
Query 482 TGATCGCCCTCCATCACATTATTGGCGGTCCATTCAACGTCACCAATGTCTTTGAGCTTC 541
|||||| ||||||||||| | || || ||||||| |||||||||||||||||||||
Sbjct 143 CGATCGCGCTCCATCACAT-A--GG---TCAATTCAACATCACCAATGTCTTTGAGCTTC 90
Query 542 ATAATGGCCGGTGGCTCATGGTGCACCATCACTCCTCCATCATCCCAACAAACGGTGTGG 601
||||||| || ||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 89 ATAATGGACGATGGCTCATGGTGCACCACCACTCCTCCATCATCCCCACAAACGGTGTGG 30
Query 602 AGAAT 606
|||||
Sbjct 29 AGAAT 25
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29487444289
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5