BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg889815
Length=2640
Score E
Sequences producing significant alignments: (Bits) Value
AT4G23510.1 | Symbols: | Disease resistance protein (TIR-NBS-L... 2689 0.0
AT4G23515.1 | Symbols: | Toll-Interleukin-Resistance (TIR) dom... 1000 0.0
AT1G10650.1 | Symbols: | SBP (S-ribonuclease binding protein) ... 171 4e-41
> AT4G23510.1 | Symbols: | Disease resistance protein (TIR-NBS-LRR
class) family | chr4:12267516-12270543 REVERSE LENGTH=1925
Length=1925
Score = 2689 bits (1456), Expect = 0.0
Identities = 1779/1927 (92%), Gaps = 53/1927 (3%)
Strand=Plus/Plus
Query 728 AGTCGCGAAAGCCTCAAGTGTTCATTAGTTTCAGGGGTAAAGCTCAAAGAAAAACCTTAG 787
||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 34 AGTCGCGGAAGCCTCAAGTGTTCATCAGTTTCAGGGGTAAAGCTCAAAGGAAAACCTTAG 93
Query 788 TGAGCTTTATAAAGTCAAAGTTAGAAGAGATCAGCGAAATCAATGTTTTCATGGACGAGT 847
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 94 TGAGCTTTATAAAGTCAAAGTTAGAGGAGATCAGCGAAATCAATGTTTTCATGGACGAGT 153
Query 848 ACGAGATTAGAGGGAGGCCAATCACAACACTCTTTAAACGAATCAGAGAGTCAAGTATCG 907
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 154 ACGAGATTAGAGGGAGGCCAATCACAACACTCTTCGAACGAATCAGAGAGTCAAGTATCG 213
Query 908 CACTCA-TCATCTTCTCAGACAAGTACCCTGAGTCACGCTGGTGCTTAGACGAGCTAGTT 966
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 214 CACT-AGTCATCTTCTCAGACAAGTACCCTGAGTCACGCTGGTGCTTAGACGAGCTAGTT 272
Query 967 GAGATCAAGAAGCAAATGGACACAGGATCTATTGTTCCCTTTCCAATATTCTACAAAGTG 1026
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 273 GAGATCAAGAAGCAAATGGAGACAGGATCTATTGTTCCCTTTCCAATATTCTACAAAGTG 332
Query 1027 AAAGCTGTGTCCGTCAAGAACCAGACTGGTCACTTTCGTAATGTTCTCCTCAAGACTGAG 1086
||||||| |||||||||||| |||||||||||||| ||||||||||||||||| ||||||
Sbjct 333 AAAGCTGAGTCCGTCAAGAATCAGACTGGTCACTTCCGTAATGTTCTCCTCAAAACTGAG 392
Query 1087 GATGACGTTCGCAAAAAGGTTGATAGGAGAAACATCAGGTCAATACTTGAAACAGAGGAT 1146
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 393 GAAGACGTTCGCAAAAAGGTTGATAGGAGCAACATCAGGTCAATACTTGAAACAGAGGAT 452
Query 1147 ATGATTTGGGGTTGGAGGCAAGCTTTAGTCTCCGTTGGCGGAAGAATGGGGTTTTCTTAT 1206
||||||||||| ||||| |||||||||||||| ||||| |||||||||||||||||||||
Sbjct 453 ATGATTTGGGGATGGAGACAAGCTTTAGTCTCTGTTGGTGGAAGAATGGGGTTTTCTTAT 512
Query 1207 AATCATAAATGTGACAACGATTTCGTTAATGATATTGTGGTCCAGGTCAAGAAAATGTTA 1266
|||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 513 AATCATAAATGTGATAACGATTTCGTTAACGATATTGTGGTCCAGATCAAGAAAATGTTA 572
Query 1267 GCCGATTTATCTCCAACTCCAAGAAATGGTCTCAAAATCAT--AGA-G----AG--G--- 1314
||||||||||||||| |||||||||||||||| |||||||| ||| | || |
Sbjct 573 GCCGATTTATCTCCATCTCCAAGAAATGGTCTTAAAATCATAGAGAGGCCTCAGATGCAT 632
Query 1315 CCTCAGGAAGAAGTGACGTCCTTGTTACAAGCTCTAAACCTTAAGAAATCTGATCTTGAA 1374
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 633 CCTCAGGAAGAAGTAACGTCATTGTTACAAGCTCTAAACCTTAAGAAATCTGATCTTGAA 692
Query 1375 GATCTTATTCATACCAATGGCGTCGTTTCCCAGGGCACTGATCTTCTGGTGTTTCTTGAC 1434
||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 693 GATCTTATTCATATCAATGGCGTCGTTTCCCATGGCACTGATCGTCTGGTGTTTCTTGAC 752
Query 1435 CTGATCTCTCTTCAGAATCCTATCCTTGCTCAGCGATTAATCGAGCTAGTTCAAGCTGGA 1494
|||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||
Sbjct 753 CTGATCTCTCTTCAGAATCCTATCCTCGCTGATCGATTAATCGAGCTAGTTCAAGCTGGA 812
Query 1495 AGGATTCTCTTGGTGTTGTTAGGTTCTCTAGAATACTACAATAATGGTTTTGA-TTTCAA 1553
|||| ||||||||||||||||||||||||||||||||||||||| || ||| | ||||||
Sbjct 813 AGGAATCTCTTGGTGTTGTTAGGTTCTCTAGAATACTACAATAAAGG-TTTCACTTTCAA 871
Query 1554 GCGTCTCTTTCTGCCCAAGAAATCTCAACAATTGCCTGGTAACACAGCTGTGGCAGAGAG 1613
|||| ||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 872 GCGTATCTTTCTTCCCAAGAAATCTCAACAATTGCCTGGTTACACAGTTGTGGCAGAGAG 931
Query 1614 TAATGACAATCTTCGTAATCGTGAAGTTAGCTACACTGATGCTGTTTTGACCTGCTTTTC 1673
|||||||||||||||||| | ||||||||||||| ||||| ||||||||||||| |||||
Sbjct 932 TAATGACAATCTTCGTAACCATGAAGTTAGCTACTCTGATACTGTTTTGACCTGTTTTTC 991
Query 1674 ATTCTTATGTAACATACTGAACCGTAGTGAAATGAAAATCGACCCTCCATCTCGAAGAGT 1733
||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||
Sbjct 992 ATTCTTATGTAACATACTGAAACGTAGTGAAATGAAAATCGACCCTCTATCTCAAAGAGT 1051
Query 1734 GTTCATCAGTCTTGGAGAAAAGCATCTCGGAAAATTCCTAGTGAACTCTCTGAAAGAAGA 1793
|||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 1052 ATTCATCGGTCTTGGAGAAAAGCATCTCGGAAAATTCCTAGTGAGCTCTCTAAAAGAAGA 1111
Query 1794 ATTGGAGTCGAACCAAATATTAGTGTATGGAGAGGATGAGACGAAGAGCAGGATCAAGGA 1853
|||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 1112 ATTGGAATCGAACCAAATATTAGTGTATGTAGAGGATGAGACGAAGAGCAGGATCAAAGA 1171
Query 1854 GTCAGGGGTTGCAGTAGTGGTCTTCTCAAATAAGTACCCTAAGTCAGAAAAGTGTCTTGA 1913
||||||||||||||||||| |||||||||| ||||||||||| || ||||||||||||||
Sbjct 1172 GTCAGGGGTTGCAGTAGTGTTCTTCTCAAAGAAGTACCCTAATTCTGAAAAGTGTCTTGA 1231
Query 1914 TGAGCTCGTTGAGATCAAGAAACTTATGGACACAGGGAAAATCGATCCCTTGCCTGTTTT 1973
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1232 TGAGCTCGTTGAGATCAAGAAACTTATGGACGCAGGGAAAATCGATCCCTTGCCTGTTTT 1291
Query 1974 TTACAGCTTAAAGGATGAACCAGTTAAGAAGCTCAAGGGATGTTTCCTTAATAGGCTTCT 2033
|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 1292 TTACAGCTTAAAGGATGAACCAGTTAAGAATCTCAAGGGATATTTCCTTAATAGGCTTCT 1351
Query 2034 CAAGATAGAGGACGAAGTGCGTAAGAACATCAAGACGAGAGATGATAAGTCTATACTTGA 2093
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1352 CAAGATAGAGAATGAAGTGCGTAAGAACATCAAGACGAGAGATGATAAGTCTATACTTGA 1411
Query 2094 TACTGAAGCTAAAATCTGGGGATGGAGAGATGCTCTCTCGTCCATTGCCTCAAGACCGGG 2153
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1412 TACTGAAGCTAAAATCTGGGGATGGAGAGATGCTCTCTCGTCCATTGCCTCAAGACCGGG 1471
Query 2154 TCTGAGCTATGAACTTAGCACTGATGACGTTTTCGTCAGTGATATTGTGACCAAGGTCAA 2213
|||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1472 TCTGAGCTATGAGCTTAGCACTGATGACGTGTTCGTTAGTGATATTGTGACCAAGGTCAA 1531
Query 2214 TGAACTACTTGCCTCTAGGGAGAGAAAGAAGACAGAAGCAGAAACAACAGTAGTCAAATC 2273
||||||| ||||||| ||||||||||||||||||||||||| ||||||||| |||||| |
Sbjct 1532 TGAACTATTTGCCTCAAGGGAGAGAAAGAAGACAGAAGCAGCAACAACAGTTGTCAAAAC 1591
Query 2274 CCTTGATG---ATGACTTATTCTATTCCCGAACTTCGTTCTTACAAGCTATAGACCGTGA 2330
|| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1592 TCTCGATGCTGATGACTTATTCTATTCCCGAACTTCGTTCTTACAAGCTATAGACCGTGA 1651
Query 2331 CAATACAGATTTTGAAAGCTTCACAGATATCCCCCATGGTCTTGTACTTCTGAGGCTTAA 2390
|| ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 1652 CATTACAGATTTTGAAAGCTTCACTGATATCCCAAATGGTCTTGTACTTCTGAGGCTTAA 1711
Query 2391 AGGACACACTAATCTAGTGTTCCTCAAACTGAGTTCTCATGAAAATTTGTTGCTTAAGAC 2450
|||||||||||||||||||||||||||||||||||||||||||||| || || | |
Sbjct 1712 AGGACACACTAATCTAGTGTTCCTCAAACTGAGTTCTCATGAAAATCTG---CT---G-C 1764
Query 2451 AGGTTTTATACTTGTTGATTGTTGTCTTTGGATTTTAACAAAACCATTGACTATATCTTA 2510
||||||||||||||||| | |||||||||||||||||| | || | |
Sbjct 1765 AGGTTTTATACTTGTTG-T------CTTTGGATTTTAACAAAAG-AG-GAGGGGA----A 1811
Query 2511 TGATGACGATGACCGCAACTCTTCAGTGAGTTCTACTAGTTGTAGCATTGTAGCTGCTTC 2570
| || | | ||| | | |||| |||| ||||| |||||||||||||||||||
Sbjct 1812 -GCCGA--A--A--GCA--T-T---GTGACTTCTGCTAGTGGTAGCATTGTAGCTGCTTC 1858
Query 2571 TCCAATCTTTCAGTCACTCCATGTTAGTCTTCGGATTGACCTCAATAGACAAAAAGATG- 2629
| |||| |||||| ||||| || |||| |||||||||||||||||||||||||| |||
Sbjct 1859 TTCAATGTTTCAGCCACTCGATAATAGTATTCGGATTGACCTCAATAGACAAAAATATGC 1918
Query 2630 AACTTGA 2636
|||||||
Sbjct 1919 AACTTGA 1925
> AT4G23515.1 | Symbols: | Toll-Interleukin-Resistance (TIR) domain
family protein | chr4:12271382-12272842 REVERSE LENGTH=996
Length=996
Score = 1000 bits (541), Expect = 0.0
Identities = 671/731 (92%), Gaps = 19/731 (3%)
Strand=Plus/Plus
Query 1 ATGGGGATTACGCATTACAATAAGGATCAAGTATTCATCAGTTTCCGGGGAAAAGACGAG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGGATTACGCATTACAATAAGGATCAAGTATTCATCAGTTTCCGGGGAAAAGACGAG 60
Query 61 CGGTACGGATTCTTAACTCATCTCAAACAGAAGTTGATCGATGGCAATGTGAATGTGTTC 120
||| ||||||| ||||||| ||| || ||||| ||||| |||||||||||||||||||||
Sbjct 61 CGGAACGGATTATTAACTCTTCTTAAGCAGAAATTGATTGATGGCAATGTGAATGTGTTC 120
Query 121 ACTGACGACAATG-TCACTGGACAACCACTCCAGAATCTCTTCGGACACATCCGAAAGTC 179
|||||||| || | | ||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 121 ACTGACGATAA-GTTGACTGGACAACCGCTCCAGAATCTTTTCGGACACATCCGAAAGTC 179
Query 180 AAGGATCG-TGATTGTGATCTTTTCCAAGAACTACGCCGAGTCAGATTGGTGTTTGGACG 238
|||||||| | |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 180 AAGGATCGCT-ATTGTGATCTTTTCCAAGAACTACGCCGAGTCAGGTTGGTGTTTGGACG 238
Query 239 AGCTTGTGGAGATCAAGAAATGCTTTGAGACGGAGGCGCTCAAAGCAGTCATACCCATCT 298
| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 239 AACTTGTGGAGATCAAGAAATGCTTTGAGACGGAGGCACTTAAAGCAGTCATACCCATCT 298
Query 299 TTCATAAGGTGAAGGTTTCAAGCGTTAAGAAACAGAGCGGAAAGTTTGGGGAAAAGTTTC 358
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 TTCATAGGGTGAAGGTTTCAAGCGTTAAGAAACAGAGCGGAAAGTTTGGGGAAAAGTTTC 358
Query 359 TGGCTTTGCAAAACTCTTTGCTTGCTGAAGAAGTCAATAAGAAAAAGATTAAGCGTATTA 418
||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 359 TGGCTTTGCAAAACTATTTGCTTGCTGAAGAAGTCGATAAGAAGAAGATTAAGCGTATTA 418
Query 419 ATTCCAGGATCAAGAGATGGAAGAAAGCTTTGAAGATCGTCACTGAAATAGCTGGATTGA 478
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 419 ATTCCAGGATCAAGAGATGGAAGAAAGCTCTGAAGATCGTCACTGAAATAGCTGGATTGA 478
Query 479 CTCATGACAAGAATAGTCCTGAGCTGGCTTTCGTGGAGAAAGTCGTTGAAAAGATCAATA 538
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||
Sbjct 479 CTCATGACAAGAATAGTCCTGAGTTGGCTTTCGTGGAGAAAGTCGTTGAAAAGATTATTA 538
Query 539 TAAATTTAGCCAATATTGCAGCAGAGGAAGGGCGTAATTATAGTACTCTAGAAACTAGTG 598
| ||||||||| |||||||||||||||||| || ||| | |||| |||||||||||||
Sbjct 539 GACATTTAGCCAGTATTGCAGCAGAGGAAGGACGCAAT-A--GTACGCTAGAAACTAGTG 595
Query 599 AGACATCACTAGGAAGACAACCAAACCAGATTATTTATAATGTCAATCAATTAAACATAA 658
||||| ||| || || ||||||||||||||| ||||||||||||| | || | |||
Sbjct 596 AGACACCACCAGTAATACAACCAAACCAGATAATTTATAATGTCA-T-AA--A--CAT-- 647
Query 659 ACATCCAGCTCCATCGTTCGAAGAGCTTGGAAGCTTTGAGACTGAGCTATAATCCTGAAG 718
| | |||||||||||| |||||||||||| ||| | ||||||||||||||||||||
Sbjct 648 -C--CG-GCTCCATCGTTCAAAGAGCTTGGAAAATTTTAAACTGAGCTATAATCCTGAAG 703
Query 719 ACGACAACAAG 729
| |||||||||
Sbjct 704 AAGACAACAAG 714
> AT1G10650.1 | Symbols: | SBP (S-ribonuclease binding protein)
family protein | chr1:3524018-3526346 REVERSE LENGTH=1519
Length=1519
Score = 171 bits (92), Expect = 4e-41
Identities = 120/134 (90%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 2504 TATCTTATGATGACGATGACCGCAACTCTTCAGTGAGTTCTACTAGTTGTAGCATTGTAG 2563
|||||||||| |||||||| | ||| |||||||||| |||| ||||| |||||||| |||
Sbjct 724 TATCTTATGACGACGATGAACACAATTCTTCAGTGACTTCTGCTAGTGGTAGCATTTTAG 783
Query 2564 CTGCTTCTCCAATCTTTCAGTCACTCCATGTTAGTCTTCGGATTGACCTCAATAGACAAA 2623
|||||||||||||||||||||||||| ||| ||||||||||||||| ||| |||||||||
Sbjct 784 CTGCTTCTCCAATCTTTCAGTCACTCGATGATAGTCTTCGGATTGATCTCCATAGACAAA 843
Query 2624 AAGATGAACTTGAC 2637
||||||| |||||
Sbjct 844 AAGATGAGTTTGAC 857
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 131086222059
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5