BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg889834
Length=1068
Score E
Sequences producing significant alignments: (Bits) Value
AT4G11420.1 | Symbols: EIF3A, ATEIF3A-1, EIF3A-1, ATTIF3A1, TIF... 436 2e-121
> AT4G11420.1 | Symbols: EIF3A, ATEIF3A-1, EIF3A-1, ATTIF3A1, TIF3A1
| eukaryotic translation initiation factor 3A | chr4:6947476-6952445
REVERSE LENGTH=3451
Length=3451
Score = 436 bits (236), Expect = 2e-121
Identities = 404/482 (84%), Gaps = 23/482 (5%)
Strand=Plus/Plus
Query 210 CTCAGTT-GTTCCTTTC-TTCGACTTCTCAGCGGTTGAGACGATATCAGCTGATGCTGT- 266
||||||| || || ||| ||| | ||||||| ||| |||| ||| || | |||||||||
Sbjct 1541 CTCAGTTGGTACCCTTCTTTC-AATTCTCAGAGGTAGAGAAGATTTCTGTTGATGCTGTG 1599
Query 267 AAGAAACAATTTCGTTGACATGAAAGTTGATCACATAAAGGGTGTTGTAATTTTTGGAAA 326
||| |||||||| |||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 1600 AAG-AACAATTTTGTTGCCATGAAAGTTGATCACATGAAGGGTGTTGTAATTTTTGGAAA 1658
Query 327 TCTGAGTAATGAGTCTGATGGGCTGAAAGAACCTCTAGCTATTTTTGCTGAGACTATGGA 386
| || ||| |||||||||||| |||| || | ||| ||| ||||||| ||| || | ||
Sbjct 1659 TTTGGGTATTGAGTCTGATGGACTGAGGGATCATCTGGCTGTTTTTGCCGAGTCT-TTGA 1717
Query 387 -CAAA-TCAAGAGCGATGTTATTTCCTGCCCCAAGTAAAGCATCAAAGGTTGGTGACG-T 443
|||| | |||||| ||| | | ||||| |||||||||||||||||| | | || || |
Sbjct 1718 GCAAAGT-AAGAGCTATGCTGTATCCTGTCCCAAGTAAAGCATCAAAACTAGCTGGCGTT 1776
Query 444 AGTACCAAATCTAG-AGGAGACTGTAGA-AAAGGAGCACAAAAGACTGCTTTCTCGGAAA 501
| |||||||| ||| | || ||||| || ||| |||||||||||||||||| |||| |||
Sbjct 1777 A-TACCAAATTTAGCA-GATACTGTTGAGAAA-GAGCACAAAAGACTGCTTGCTCGTAAA 1833
Query 502 TCAATCATTGAAAAGAGGAAGGAGGAACAAGAGCGTCAGCAACTAGAGATGGAACTTGAA 561
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||
Sbjct 1834 TCAATCATTGAAAAGAGGAAGGAGGATCAAGAGCGTCAGCAACTAGAAATGGAACGTGAA 1893
Query 562 GAGGAGCAGAGAAAG-CTTAAGCTTCTGAAGCTAACC-AATGAGGCAGAACAGAAGAGAC 619
|||||||||| || | |||||||||| ||||||||| || ||||||||||| |||||||
Sbjct 1894 GAGGAGCAGA-AACGGCTTAAGCTTCAGAAGCTAACTGAA-GAGGCAGAACAAAAGAGAC 1951
Query 620 TTGC-GACAGAGCTTA-AGGAGAGGAGAAGACACAGAATTCATAGGGGGATAGAGGAGAA 677
|||| | |||||||| || |||| |||| ||| ||||| | ||| | ||||||||||||
Sbjct 1952 TTGCAG-CAGAGCTTGCAG-AGAGAAGAAAACAAAGAATCCTTAGAGAGATAGAGGAGAA 2009
Query 678 GG 679
||
Sbjct 2010 GG 2011
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52308967890
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5