BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg889839
Length=1506
Score E
Sequences producing significant alignments: (Bits) Value
AT4G23220.1 | Symbols: CRK14 | cysteine-rich RLK (RECEPTOR-like... 582 3e-165
AT4G23200.1 | Symbols: CRK12 | cysteine-rich RLK (RECEPTOR-like... 392 5e-108
AT4G11530.1 | Symbols: CRK34 | cysteine-rich RLK (RECEPTOR-like... 291 2e-77
AT4G23280.1 | Symbols: CRK20 | cysteine-rich RLK (RECEPTOR-like... 276 5e-73
AT4G23270.1 | Symbols: CRK19 | cysteine-rich RLK (RECEPTOR-like... 267 3e-70
AT4G23230.1 | Symbols: CRK15 | cysteine-rich RLK (RECEPTOR-like... 241 2e-62
> AT4G23220.1 | Symbols: CRK14 | cysteine-rich RLK (RECEPTOR-like
protein kinase) 14 | chr4:12153956-12157091 REVERSE LENGTH=2322
Length=2322
Score = 582 bits (315), Expect = 3e-165
Identities = 431/485 (89%), Gaps = 15/485 (3%)
Strand=Plus/Plus
Query 1025 GCGGTTACATGCCCCCAGAATATGTGATGCATGGCCAATTCTCAACAAAATCTGATGTAT 1084
||||||||||||| ||||||||||||| ||| || || |||||||||| ||| ||||| |
Sbjct 1715 GCGGTTACATGCCTCCAGAATATGTGAGGCAAGGTCAGTTCTCAACAAGATCAGATGTTT 1774
Query 1085 ATAGTTTTGGAGTATTAGTTCTTGAGATTATATGCGGTCAAAATAACAGATTCGTCCACC 1144
||||||| ||||| |||||||||||||||||||| |||| ||||||||||||| ||||||
Sbjct 1775 ATAGTTTCGGAGTCTTAGTTCTTGAGATTATATGTGGTCGAAATAACAGATTCATCCACC 1834
Query 1145 AGTCAGACACTACAGTTGAGAATTTGGTCACATACGCTTGGAGGTTGTGGAGAAACGGGA 1204
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1835 AGTCAGACACTACAGTTGAGAATTTGGTCACATACGCTTGGAGGTTGTGGAGAAACGATT 1894
Query 1205 CACCATTGGAACTCGTGGATCCAGCTATTGCAGATAATTGTGAAACCGAGGAAGTGATAA 1264
||||||| ||||||||||||||| | ||| | || |||||||||||||| ||||||| ||
Sbjct 1895 CACCATTAGAACTCGTGGATCCAACCATTTCGGAGAATTGTGAAACCGAAGAAGTGACAA 1954
Query 1265 GCTGCATCCACATTGCACTACTATGTGTTCAACACAGTCCCACTGATCGTCCCAGCTTGT 1324
| |||||||||||||| | || ||||||||||||| |||||| ||||| ||||||||||
Sbjct 1955 GATGCATCCACATTGCGTTGCTGTGTGTTCAACACAATCCCACAGATCGCCCCAGCTTGT 2014
Query 1325 CGACAATCAACATGCTGCTCACTAA-CAATTCGTATGTTTTACCTGATCCTCAACAACCT 1383
|||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 2015 CGACAATCAACATGATGCTCA-TAAACAATTCGTATGTTTTACCTGATCCTCAACAACCT 2073
Query 1384 GGATTCTTCTTTCCAAATAA-AAGCAACAAAGAACGAGATGGCCTCGAGTCTAGCCAGTC 1442
|||||||||||||||| ||| ||||||| ||||||||||||||||||| |||| |
Sbjct 2074 GGATTCTTCTTTCCAA-TAATAAGCAACCAAGAACGAGATGGCCTCGACTCTA-----T- 2126
Query 1443 TACGAACAGGTCTAGTTCC-CAAACTATCAATGATGTAACCATCACAGATCTTGAACCTC 1501
||||||||| | | || ||||||||||||||||||||||| |||||| |||||||||
Sbjct 2127 ---GAACAGGTCCAAT-CCACAAACTATCAATGATGTAACCATTACAGATTTTGAACCTC 2182
Query 1502 GTTGA 1506
|||||
Sbjct 2183 GTTGA 2187
Score = 464 bits (251), Expect = 1e-129
Identities = 431/512 (84%), Gaps = 36/512 (7%)
Strand=Plus/Plus
Query 483 TGCAACAAACAAATTCTCGGAGAGCAATATAATTGGCCGTGGTGGATTTGGAGAAGTTTT 542
||||||||| ||||||||||||||||| |||||||| || ||||||||||||||||||||
Sbjct 1206 TGCAACAAATAAATTCTCGGAGAGCAACATAATTGGTCGCGGTGGATTTGGAGAAGTTTT 1265
Query 543 CAAGGCTGTCCTCAACGGGACTGAAGTTGCAATTAAGAGGCTGTCAAAATCATCAA-ACA 601
|| || |||||| ||||| |||||||||||||||||||||||||||||| |||| | |||
Sbjct 1266 CATGGGTGTCCTTAACGGTACTGAAGTTGCAATTAAGAGGCTGTCAAAAGCATCGAGACA 1325
Query 602 AGGTGCAC-ATGAGTTCAAGAACGAGGAA-TC-TTGTT--AGG-CTTC-TC---GG--T- 648
|||||||| | || ||||| || |||| | ||||| | || | || || |
Sbjct 1326 AGGTGCACGA-GAATTCAAAAATGAGGTTGTTGTTGTTGCAAAACTCCATCATAGGAATC 1384
Query 649 TT-TT--G-TT-T-GGAAG--G---AGAAG-A-AA-AGA---TACTTGTTTACGAGTTTG 691
|| || | || | || | ||||| | || ||| ||||||||||||||||||
Sbjct 1385 TTGTTAAGCTTCTCGGGTTTTGTCTAGAAGGAGAAGAGAAAATACTTGTTTACGAGTTTG 1444
Query 692 TGCCCAACAAGAGCCTCAATTACTTCCTCTTTGACCCAATGAAGCAAGGAG-AGTTAGAC 750
| ||||||||||||||| | ||||||||||||||||| | |||||||| | ||||||||
Sbjct 1445 TCCCCAACAAGAGCCTCGACTACTTCCTCTTTGACCCTACAAAGCAAGG-GCAGTTAGAC 1503
Query 751 TGGACAAAACGGTACAACATTATCCTAGGAATCACTCGAGGAATTTTATATCTTCATCAA 810
||||| ||||| ||||||||||||| |||||||||||||||||| | ||||||||||||
Sbjct 1504 TGGACTAAACGATACAACATTATCCGGGGAATCACTCGAGGAATTCTGTATCTTCATCAA 1563
Query 811 GATTCAAGGCTCACAATCATACACCGTGATCTCAAAGCCAGCAACATTCTTCTAGATGCC 870
|| ||| ||||||| |||||||| ||||| |||||||||||||||||||| ||||||||
Sbjct 1564 GACTCACGGCTCACGATCATACATCGTGACCTCAAAGCCAGCAACATTCTCCTAGATGC- 1622
Query 871 A-ATATGAACCCAAAAATTGCTGATTTTGGAATGGCGAGAATATTTGGGATCGACCAAAG 929
| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1623 AGATATGAACCCAAAAATTGCTGATTTTGGAATGGCGAGAATTTTTGGGATCGATCAAAG 1682
Query 930 TGGAGCTAATACAAACAGAATAGCTGGAACAC 961
||||||||||||||| | ||||||||| ||||
Sbjct 1683 TGGAGCTAATACAAAAAAAATAGCTGGGACAC 1714
> AT4G23200.1 | Symbols: CRK12 | cysteine-rich RLK (RECEPTOR-like
protein kinase) 12 | chr4:12145380-12147934 REVERSE LENGTH=1947
Length=1947
Score = 392 bits (212), Expect = 5e-108
Identities = 297/338 (88%), Gaps = 6/338 (2%)
Strand=Plus/Plus
Query 625 AGGAATCTTGTTAGGCTTCTCGGTTTTTGTTTGGAAGGAGAAGA-AAAGATACTTGTTTA 683
||||||||||||| |||||| || | ||| ||||| ||| || ||| |||||||||||
Sbjct 1135 AGGAATCTTGTTAAGCTTCTTGGGTACTGTCTGGAACCAGAGGAGAAA-ATACTTGTTTA 1193
Query 684 CGAGTTTGTGCCCAACAAGAGCCTCA-ATTACTTCCTCTTTGACCCAATGAAGCAAGGAG 742
||||||||| |||||||||||||| | | |||||||| ||||| || | |||||||| |
Sbjct 1194 CGAGTTTGTCCCCAACAAGAGCCT-AGACTACTTCCTTTTTGATCCTACAAAGCAAGG-G 1251
Query 743 -AGTTAGACTGGACAAAACGGTACAACATTATCCTAGGAATCACTCGAGGAATTTTATAT 801
||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||
Sbjct 1252 CAGTTAGACTGGACAAAACGATACAACATTATCGGAGGAATCACTCGAGGAATTCTATAT 1311
Query 802 CTTCATCAAGATTCAAGGCTCACAATCATACACCGTGATCTCAAAGCCAGCAACATTCTT 861
||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||
Sbjct 1312 CTTCATCAAGATTCACGACTAACAATCATACACCGTGATCTCAAAGCCAGCAACATTCTT 1371
Query 862 CTAGATGCCAATATGAACCCAAAAATTGCTGATTTTGGAATGGCGAGAATATTTGGGATC 921
||||||||| |||||| ||| ||||| |||||||||||||||||||| |||| ||| ||
Sbjct 1372 CTAGATGCCGATATGATCCCGAAAATCGCTGATTTTGGAATGGCGAGGATATCTGGAATA 1431
Query 922 GACCAAAGTGGAGCTAATACAAACAGAATAGCTGGAAC 959
|||||||||| |||||| ||||| || |||||||||||
Sbjct 1432 GACCAAAGTGTAGCTAACACAAAAAGGATAGCTGGAAC 1469
> AT4G11530.1 | Symbols: CRK34 | cysteine-rich RLK (RECEPTOR-like
protein kinase) 34 | chr4:6987093-6989599 FORWARD LENGTH=2010
Length=2010
Score = 291 bits (157), Expect = 2e-77
Identities = 280/339 (83%), Gaps = 10/339 (3%)
Strand=Plus/Plus
Query 627 GAATCTTGTTAGGCTTCTCGGTTTTTGTTTGGAAGGAGAAGAAAAGATACTTGTTTACGA 686
|||||| || |||||||| || ||||||||||||||||||||||||||||| || || ||
Sbjct 1197 GAATCTGGTCAGGCTTCTTGGATTTTGTTTGGAAGGAGAAGAAAAGATACTCGTCTATGA 1256
Query 687 GTTTGTGCCCAACAAGAGCCTCAATTACTTCCTCTTTGACCCAATG-AAG-CAAGGAGAG 744
|||||| |||||||| ||||| | || || ||||||||||| || || ||||| ||
Sbjct 1257 GTTTGTACCCAACAAAAGCCTTGACTATTTTCTCTTTGACCC--TGCAAAACAAGGTGAA 1314
Query 745 TTAGACTGGACAAAACGGTACAACATTATCCTAGGAATCACTCGAGGAATTTTATATCTT 804
|||| ||||||| ||||||||| || || || || ||||||||||| ||||||||
Sbjct 1315 CTAGATTGGACAAGACGGTACAATATCATTGGGGGGATTGCTCGAGGAATTCTATATCTT 1374
Query 805 CATCAAGATTCAAGGCTCACAATCATACACCGTGATCTCAAAGCCAGCAACATTCTTCT- 863
|||||||||||| |||| |||||||||||||||||||||||||| || |||||||| ||
Sbjct 1375 CATCAAGATTCACGGCTTACAATCATACACCGTGATCTCAAAGCGAGTAACATTCT-CTT 1433
Query 864 AGATGCCAATATGAACCCAAAAATTGCTGATTTTGGAATGGCGAGAATATTTGG-GATCG 922
|||||| |||||||||| |||||||| |||||||| |||||||| || ||||| | | |
Sbjct 1434 AGATGCTGATATGAACCCCAAAATTGCAGATTTTGGCATGGCGAGGATTTTTGGAGTT-G 1492
Query 923 ACCAAAGTGGAGCTAATACAA-ACAGAATAGCTGGAACA 960
| |||||| ||| || |||| | ||||| || ||||||
Sbjct 1493 ATCAAAGTCAAGCCAACACAAGA-AGAATCGCCGGAACA 1530
> AT4G23280.1 | Symbols: CRK20 | cysteine-rich RLK (RECEPTOR-like
protein kinase) 20 | chr4:12174740-12177471 FORWARD LENGTH=1971
Length=1971
Score = 276 bits (149), Expect = 5e-73
Identities = 250/299 (84%), Gaps = 6/299 (2%)
Strand=Plus/Plus
Query 646 GGTTTTTGTTTGGAAGGAGAAGAAAAGATACTTGTTTACGAGTTTGTGCCCAACAAGAGC 705
|||| |||||||||||||||||||||||||||||| ||||||||||| || ||||| |||
Sbjct 1183 GGTTATTGTTTGGAAGGAGAAGAAAAGATACTTGTCTACGAGTTTGTACCAAACAAAAGC 1242
Query 706 CTCAATTACTTCCTCTTTGACCCAATGAAGCAAGGAG-AGTTAGACTGGACAAAACGGTA 764
||| ||||||| || |||||||| | || |||||| | || |||||||| ||| ||||||
Sbjct 1243 CTCGATTACTTTCTTTTTGACCCTACGATGCAAGG-GCAGCTAGACTGGTCAAGACGGTA 1301
Query 765 CAACATTATCCTAGGAATCACTCGAGGAATT-TTATATCTTCATCAAGATTCAAGGCTCA 823
||| || || |||||| || |||||||| || |||||||||||||||||| | ||||
Sbjct 1302 CAAGATCATTGGAGGAATTGCTAGAGGAATTCTT-TATCTTCATCAAGATTCACGACTCA 1360
Query 824 CAATCATACACCGTGATCTCAAAGCCAGCAACATTCTTCTAG-ATGCCAATATGAACCCA 882
|||| |||||||| || |||||||| ||||||| || || | | || |||||||||||
Sbjct 1361 CAATTATACACCGGGACCTCAAAGCGGGCAACATCCT-CTTGGACGCTGATATGAACCCA 1419
Query 883 AAAATTGCTGATTTTGGAATGGCGAGAATATTTGGGATCGACCAAAGTGGAGCTAATAC 941
||| |||| ||||||||||||||||| || |||||||| ||||||| | ||| |||||
Sbjct 1420 AAAGTTGCAGATTTTGGAATGGCGAGGATTTTTGGGATGGACCAAACAGAAGCCAATAC 1478
> AT4G23270.1 | Symbols: CRK19 | cysteine-rich RLK (RECEPTOR-like
protein kinase) 19 | chr4:12171103-12173925 FORWARD LENGTH=2099
Length=2099
Score = 267 bits (144), Expect = 3e-70
Identities = 271/330 (82%), Gaps = 18/330 (5%)
Strand=Plus/Plus
Query 639 GCTTCTCGGTTTTTGTTTGGAAGGAGAAGAAAAGATACTTGTTTACGAGTTTGTGCCCAA 698
||| || |||| ||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1182 GCTGCTTGGTTATTGTTTGGAAGGAGAAGAAAAAATACTTGTCTACGAGTTTGTGCCCAA 1241
Query 699 CAAGAGCCTCAATTACTTCCTCTTTGAC-C--CAATGAAGCAAGGAGAGTTAGACTGGAC 755
||||||||| || |||||||||||||| | | ||||| || || || ||||||||||
Sbjct 1242 CAAGAGCCTTGATCACTTCCTCTTTGACTCTACGATGAA--AATGA-AGCTAGACTGGAC 1298
Query 756 AA-AACGGTACAACATTATCCTAGGAATCACTCGAGGAATT-TTATATCTTCATCAAGAT 813
|| || ||||||| || || |||||| || |||||||| || |||||||||||||||
Sbjct 1299 AAGAA-GGTACAAGATCATAGGAGGAATTGCTAGAGGAATTCTT-TATCTTCATCAAGAT 1356
Query 814 TCAAGGCTCACAATCATACACCGTGATCTCAAAGCCA-GCAACATTCTTC-TAGATGCCA 871
||| | |||||||| ||||| || || ||||||| || | |||| || || | ||||
Sbjct 1357 TCACGACTCACAATTATACATCGAGACCTCAAAG-CAGGGAACA-TCCTCTTGGATGATG 1414
Query 872 ATATGAACCCAAAAATTGCTGATTTTGGAATGGCGAGAATATTTGGGATCGACCAAAGTG 931
||||||| || |||||||| ||||||||||||||||||||||||||||| ||||||| |
Sbjct 1415 ATATGAATCCTAAAATTGCAGATTTTGGAATGGCGAGAATATTTGGGATGGACCAAACAG 1474
Query 932 GAGCTAAT-ACAA-ACAGAATAGCTGGAAC 959
||| | | |||| | ||| ||| ||||||
Sbjct 1475 AAGCCA-TGACAAGA-AGAGTAGTTGGAAC 1502
> AT4G23230.1 | Symbols: CRK15 | cysteine-rich RLK (RECEPTOR-like
protein kinase) 15 | chr4:12157569-12160270 REVERSE LENGTH=2133
Length=2133
Score = 241 bits (130), Expect = 2e-62
Identities = 248/305 (81%), Gaps = 8/305 (3%)
Strand=Plus/Plus
Query 628 AATCTTGTTAGGCTTCTCGGTTTTTGT-TTGGAAGGAGAAGAAAAGATACTT-GTTTACG 685
||||| ||||||||||| || |||| | | || ||||| ||||| |||| || || ||||
Sbjct 1165 AATCTGGTTAGGCTTCTAGGATTTTCTATAGG-AGGAGGAGAAAGGATA-TTGGTCTACG 1222
Query 686 AGTTTGTGCCCAACAAGAGCCTCAATTACTTCCTCTTTGACCCAATGAAGCAAGGA-GAG 744
||| | |||||||||| ||||| ||||||| |||||||| || ||||||| | ||
Sbjct 1223 AGTATATGCCCAACAAAAGCCTTGATTACTTTCTCTTTGATCCTGCGAAGCAA-AATCAG 1281
Query 745 TTAGACTGGACAAAACGGTACAACATTATCCTAGGAATCACTCGAGGAATTTTATATCTT 804
| |||||||| ||| ||||| | || ||| || ||||||||||||||||||||
Sbjct 1282 CTGGACTGGACTCGACGATACAAGGTCATTGGAGGGATTGCTCGAGGAATTTTATATCTT 1341
Query 805 CATCAAGATTCAAGGCTCACAATCATACACCGTGATCTCAAAGCCAGCAACATTCTTCTA 864
||||||||||||||||||||||||||||||||||| |||||||| || |||||||| ||
Sbjct 1342 CATCAAGATTCAAGGCTCACAATCATACACCGTGACCTCAAAGCAAGTAACATTCTCCTG 1401
Query 865 GATGCCAATATGAA-CCCAAAAATTGCTGATTTTGGAATGGCGAGAATATTTGGGATCGA 923
||||| ||||||| |||||| |||||||||||||| |||| || || ||||| || ||
Sbjct 1402 GATGCGGATATGAATCCCAAAC-TTGCTGATTTTGGACTGGCAAGGATCTTTGGAATGGA 1460
Query 924 CCAAA 928
|||||
Sbjct 1461 CCAAA 1465
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74296806600
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5