BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg889841

Length=591
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G23240.1 | Symbols: CRK16 | cysteine-rich RLK (RECEPTOR-like...   564    4e-160


> AT4G23240.1 | Symbols: CRK16 | cysteine-rich RLK (RECEPTOR-like 
protein kinase) 16 | chr4:12160502-12161954 REVERSE LENGTH=1059
Length=1059

 Score =  564 bits (305),  Expect = 4e-160
 Identities = 355/379 (94%), Gaps = 4/379 (1%)
 Strand=Plus/Plus

Query  215   GCTTCCACCAGATAGATGGTTCAGTAGGCAACTTGGTCACATATGTTTGGAGGCTTTGGA  274
             |||||||  |||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  683   GCTTCCATGAGATTGATGGTTCAGTAGGAAACTTGGTCACATATGTTTGGAGGCTTTGGA  742

Query  275   ACAACAAATCTTTCTTGGAACTCGTAGACCCGGCCATGGGGGAGAGTTATGATAAAGATG  334
             ||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  743   ACAACGAATCATTCTTGGAACTTGTAGACCCGGCCATGGGGGAGAGTTATGATAAAGATG  802

Query  335   AAGTGATCAGATGCATCCATATAAGCTTATTGTGCGTTCAAGAAAATCCTGTAGATCGTC  394
             |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  803   AAGTCATCAGATGCATCCATATAAGCTTATTGTGCGTTCAAGAAAATCCTGCAGATCGTC  862

Query  395   CAACCATGTCCACATTATTTCAGATGCTCACTAATACTTTTCTTACTCTGCCCGTGCCTC  454
             |||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct  863   CAACAATGTCCACAGTGTTTCAGATGCTCACTAATACTTTTCTTACTCTGCCCGTGCCTC  922

Query  455   AATCACCTGGAGTT-TTCTTCAGGGTCAGATCCGAGCCAAACTCATTAGCCGAGAGA-TT  512
             ||| ||||||| || || |||||||||||||||||||||||| |||||||||||||| ||
Sbjct  923   AATTACCTGGATTTGTT-TTCAGGGTCAGATCCGAGCCAAACCCATTAGCCGAGAGACTT  981

Query  513   GGACCCTGGTCCGTCTAATACCATGTCGTTTGCTTATTCCATTGATGATGCGTCGATCAC  572
             | | ||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||
Sbjct  982   G-AGCCTGGTCCGTCTACTACCATGTCGTTTGCTTGTTCCATTGATGATGCATCGATCAC  1040

Query  573   GAGTGTTAATCTTCGTTGA  591
             ||||||| |||||||||||
Sbjct  1041  GAGTGTTGATCTTCGTTGA  1059



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28432527202


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5