BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg889863
Length=2175
Score E
Sequences producing significant alignments: (Bits) Value
AT4G23050.2 | Symbols: | PAS domain-containing protein tyrosin... 3214 0.0
> AT4G23050.2 | Symbols: | PAS domain-containing protein tyrosine
kinase family protein | chr4:12080060-12084256 FORWARD LENGTH=2811
Length=2811
Score = 3214 bits (1740), Expect = 0.0
Identities = 1928/2021 (95%), Gaps = 4/2021 (0%)
Strand=Plus/Plus
Query 157 GCGGAGGCGGCGGATTCCTGGGTTAATCCGACGGCGACTTGGGAGAGAGCAGTTTCAGGA 216
|||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 245 GCGGAGGCGGCGGATTCCTGGGATAATCCGACGGCGACTTGGGAGAGAGCTGTTTCAGGA 304
Query 217 TTCTATTTCGCTGATAGTGCGTACCGGACTTTGATGGATTCAATGGGACACGCGATTCAT 276
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 305 TTCTATTTCGCTGATAGTGCGTATCGGACTTTGATGGATTCAATGGGACACGCGATTCAT 364
Query 277 GTAACTTCTGCTGCGTCTGGAGAAATTACATTCTGGAGTCGTTCTGCTGAGAATCTGTAC 336
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 365 GTAACATCAGCTGCGTCTGGAGAAATTACATTCTGGAGTCGTTCTGCTGAGAATCTGTAC 424
Query 337 CACTGGTATGCTGAGGAAGTTGTTGGCTACAGAACAATTGATGTGCTTGTAACCGAAGAA 396
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 425 CATTGGTATGCTGAGGAAGTTGTTGGCTACAGAACTATTGATGTGCTTGTAACCGAAGAA 484
Query 397 TACCGTAATTCCCTTACTGGTATCAGGAACAGGGTTTGCCGTGGCGAGACTTGGACTGGT 456
||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||
Sbjct 485 TACCGTAATTCCCTTACTGGTATCAGGAATAGGGTGTGCCGTGGAGAGACTTGGACTGGT 544
Query 457 CAGTTTCCGTTTCAGAAGAAAACAGGTGAACTATTCATGGCGTTGGTGACTAAAAGCCCT 516
||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||
Sbjct 545 CAGTTTCCGTTTCAGAAGAAAACTGGTGAACTATTTATGGCTTTGGTGACTAAAAGCCCT 604
Query 517 GTGTATGAAAATGGTGAGCTGGTTGGTGTCGTTACTGTCTCGAGCGATGCAACACTTTTC 576
||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 605 GTGTATGAAAACGGTGAGCTGGTTGGTGTTGTTACTGTCTCGAGCGATGCAACCCTTTTC 664
Query 577 AATAGGATGCATCCATTAAGTAATGACCATCAACAGCAAGCTCGTAGTAATAATAGACAT 636
||||||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 665 AATAGGATGCATCCACTAAGTAATGAGCATCAACAACAAGCTCGTAGTAATAATAGACAT 724
Query 637 GAATCAAACTTCAGAAAGCATCAGTGGCACCTCCCGAGGCCCCAGATCGCTGCAGGATCA 696
||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 725 GAATCAAACTTGAGAAAACATCAGTGGCACCTCCCGAGGCCTCAGATCGCTGCAGCATCA 784
Query 697 CAGGTTCCAGTTGTCCCACCGTATTCATCAGCTGTTATTTCAAACCTGAAGGCTTCGAAG 756
||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||
Sbjct 785 CAGGTTCCAGTTGTCCCACAATATTCATCAGCTGTTGCTTCAAACCTGAAGGCGTCGAAG 844
Query 757 CTTTTACCTCAGAGAAATGGAGATGATTCCTTCAATGCAAATCAAAATTCTAGGAGCCGA 816
||| |||| |||||||||||||||||||||||||||| |||||| ||||| |||||||||
Sbjct 845 CTTCTACCACAGAGAAATGGAGATGATTCCTTCAATGGAAATCATAATTCGAGGAGCCGA 904
Query 817 GATGAAAATGTTCCGGTTGTTGCCTCTTCAACTTTCGAGAAGTATGGCTCACTGGCGGAT 876
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 905 GATGAAAATGTTCCGGTTGTTGCCTCCACAACTTTCGAGAAGTATGGCTCACTGGCGGAT 964
Query 877 AAGTTTTTGGGAAAGCTGCAAAGGAAGATTACTGGCAGCCAAGGAAATGAAGATAATGAG 936
||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 965 AAGTTTTTGGGGAAGCTGCAAAGGAAGATTACTGGCAGCCAAGGAACCGAAGATAATGAG 1024
Query 937 CCTCTCTTAGGAAACGGTATAAATAAGTCAGCATGTGGCAGTGGAGCTAGTTCTAAAGCT 996
||| ||||| |||||||||| ||||||||||||||||||||||||| ||||||||| |||
Sbjct 1025 CCTATCTTAAGAAACGGTATCAATAAGTCAGCATGTGGCAGTGGAGGTAGTTCTAAGGCT 1084
Query 997 TCTAATGCAGTTACCTGCACGGCTTTCAGAGACAATGGCAATGGAAAACCAAAAAGGGCT 1056
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1085 TCTAATGCAGTTACCTGCACGGCTTTCAGAGACAATGGCAATGGAAAACCAAAAAGGGCT 1144
Query 1057 GAAGTTAGATTTTCAGATGTCTATGGGAATGGAGCTGAGGGTTTGATACACAATGGAGAC 1116
||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1145 GAAGTTAGAATTTCAGATGTCTATGGAAATGGAGCTGAGGGTTTGATACATAATGGAGAT 1204
Query 1117 CGCTTTCAGTATATTGGGAACCTGGGACAAGGGAAACCTCCCAGAGGACTAGAGAGTGGT 1176
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 1205 CGCTTTCAGTATATTGGGAACCTGGGACAAAGTAAACCTCCCAGAGGACTAGAGAGTGGT 1264
Query 1177 TTGGTGTCTGGCGTGCGGGGAACAAAAATGTCGGACCTAAATGGTGAGATAGAAGATGCT 1236
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1265 TTGGTGTCTGGCATGCGGGGAACAAAAATGTCGGACCTAAATGGTGAGATAGAAGATGCT 1324
Query 1237 TGGAATACTCGTCCTAGTGACGATCCCTTGCCAATTCTTGGGGTTAACATCGGTAGGCGA 1296
||||||||||||| ||||| ||||||||||||||||| || || |||| |||||||| |
Sbjct 1325 TGGAATACTCGTCTTAGTGTTGATCCCTTGCCAATTCTAGGAGTCAACAGCGGTAGGCAA 1384
Query 1297 CAAAGTCCTGCT-AACCAAGGGAATAATAGATTAGTTACCAATTCGTCATGTGAGATACG 1355
|||||||||| | |||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 1385 CAAAGTCCTG-TCAACCAAAGGAATAATAGATTAGTTACTGATTCGTCATGTGAGATACG 1443
Query 1356 ATGGGAAGATCTACAACTTGGGGAGGAGGTCGGACGAGGTTCATTTGCTGCGGTTCATCG 1415
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1444 ATGGGAAGATCTACAACTTGGGGAGGAGGTCGGAAGAGGTTCATTTGCTGCGGTTCATCG 1503
Query 1416 TGGAGTTTGGAATGGATCAGATGTTGCTATTAAGGTTTACTTCGAGGGTGATTACAATGC 1475
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 1504 TGGAGTTTGGAATGGATCGGATGTTGCTATTAAGGTTTACTTCGATGGTGATTACAATGC 1563
Query 1476 GATGACTTTGACGGAGTGCAAAAAGGAGATCAACATTATGAAGAAACTGAGACATCCGAA 1535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1564 GATGACTTTGACGGAGTGCAAAAAGGAGATCAACATTATGAAGAAACTGAGACATCCGAA 1623
Query 1536 TGTGCTGTTATTTATGGGCGCGGTATGTACAGAAGAAAAATCTGCCATAATCATGGAGTA 1595
|||||| |||||||||| || ||||||||||||||||||||||||||||||||||| ||
Sbjct 1624 TGTGCTACTATTTATGGGAGCAGTATGTACAGAAGAAAAATCTGCCATAATCATGGAATA 1683
Query 1596 TATGCCAAGAGGGAGTCTCTTCAAAATACTTCATAATACGAATCAACCATTGGACAAGAA 1655
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1684 TATGCCAAGAGGGAGTCTCTTCAAAATACTTCATAATACGAATCAGCCATTGGACAAGAA 1743
Query 1656 ACGCCGTTTAAGAATGGCCCTTGATGTTGCTAGGGGAATGAATTACTTACACCGCAGAAA 1715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1744 ACGCCGTTTAAGAATGGCCCTTGATGTTGCTAGGGGAATGAATTACTTACACCGCAGAAA 1803
Query 1716 TCCGCCAATAGTACATAGAGACTTGAAATCTTCCAATCTACTCGTGGAC-AGAAATTGGA 1774
||||||||| ||||||||||||||||||||||||||||||||||||||| || || ||||
Sbjct 1804 TCCGCCAATTGTACATAGAGACTTGAAATCTTCCAATCTACTCGTGGACAAG-AACTGGA 1862
Query 1775 ATGTCAAGGTTGGAGACTTTGGGTTGTCAAAGTGGAAGAACGCAACCTTCTTGAGTACTA 1834
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1863 ATGTCAAGGTTGGAGACTTTGGGTTATCAAAGTGGAAGAACGCAACCTTCTTGAGTACTA 1922
Query 1835 AATCCGGGAAAGGAACTCCGCAGTGGATGGCTCCTGAAGTTCTCAGAAGTGAACCTTCGA 1894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1923 AATCCGGGAAAGGAACTCCGCAGTGGATGGCTCCTGAAGTTCTCAGAAGTGAACCTTCGA 1982
Query 1895 ATGAGAAGTGTGATGTATTTAGCTTTGGTGTCATCTTATGGGAGCTAATGACTACTTTAA 1954
|||||||||||||||| || |||||||| |||||||||||||||||||||||||| |||
Sbjct 1983 ATGAGAAGTGTGATGTGTTCAGCTTTGGAGTCATCTTATGGGAGCTAATGACTACGTTAG 2042
Query 1955 TACCATGGGACCGTTTAAACTCTATTCAGGTTGTTGGAGTTGTTGGGTTCATGGATCGAC 2014
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2043 TACCATGGGACCGTTTGAACTCTATTCAGGTTGTTGGAGTTGTTGGTTTCATGGATCGAC 2102
Query 2015 GTTTAGACTTACCAGAAGGTTTAAATCCCCGGATCGCATCCATAATACAGGATTGCTGGC 2074
| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 2103 GATTAGACTTACCTGAAGGATTAAATCCCCGGATCGCATCCATAATACAGGATTGTTGGC 2162
Query 2075 AAACTGATCCAGCAAAACGACCGTCGTTTGAGGAACTAATTAGTCAGATGATGAGCCTGT 2134
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 2163 AAACTGATCCAGCAAAACGACCGTCGTTCGAGGAATTAATTAGTCAGATGATGAGCCTGT 2222
Query 2135 TCCGCAAACCGGGGTCAGGTGTGCAAGAAGACGACGATTGA 2175
|||||||||| |||||||||| ||||||||| |||||||||
Sbjct 2223 TCCGCAAACCAGGGTCAGGTGCGCAAGAAGAAGACGATTGA 2263
Score = 241 bits (130), Expect = 3e-62
Identities = 142/148 (96%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 1 ATGGCCGGAAACAACTCGGAATCGAGTCTCTACCAGGTTTTGGTGGAGTGGTGTCAGAGA 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 53 ATGGCCGGAAACAACTCGGAATCGAGTCTCTACCAGGTTTTGGTGGAGTGGTGTCAGAGG 112
Query 61 ATGGAGACGAGTCAAGCGAGACTAAGGGAGGATGTGGAGGACTTATTGCTTCAGGATGAG 120
||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||
Sbjct 113 ATGGAGACGAGTCAAGCGAGACTAAGGGAGGATGTTGATGACTTATTGCTTCAGGAGGAG 172
Query 121 AGTCGAACCGGCAAGGAATCGGCGGCGG 148
||||||||||| |||||||||||| |||
Sbjct 173 AGTCGAACCGGTAAGGAATCGGCGACGG 200
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107880971205
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5