BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg889863 Length=2175 Score E Sequences producing significant alignments: (Bits) Value AT4G23050.2 | Symbols: | PAS domain-containing protein tyrosin... 3214 0.0 > AT4G23050.2 | Symbols: | PAS domain-containing protein tyrosine kinase family protein | chr4:12080060-12084256 FORWARD LENGTH=2811 Length=2811 Score = 3214 bits (1740), Expect = 0.0 Identities = 1928/2021 (95%), Gaps = 4/2021 (0%) Strand=Plus/Plus Query 157 GCGGAGGCGGCGGATTCCTGGGTTAATCCGACGGCGACTTGGGAGAGAGCAGTTTCAGGA 216 |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| Sbjct 245 GCGGAGGCGGCGGATTCCTGGGATAATCCGACGGCGACTTGGGAGAGAGCTGTTTCAGGA 304 Query 217 TTCTATTTCGCTGATAGTGCGTACCGGACTTTGATGGATTCAATGGGACACGCGATTCAT 276 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 305 TTCTATTTCGCTGATAGTGCGTATCGGACTTTGATGGATTCAATGGGACACGCGATTCAT 364 Query 277 GTAACTTCTGCTGCGTCTGGAGAAATTACATTCTGGAGTCGTTCTGCTGAGAATCTGTAC 336 ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 365 GTAACATCAGCTGCGTCTGGAGAAATTACATTCTGGAGTCGTTCTGCTGAGAATCTGTAC 424 Query 337 CACTGGTATGCTGAGGAAGTTGTTGGCTACAGAACAATTGATGTGCTTGTAACCGAAGAA 396 || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 425 CATTGGTATGCTGAGGAAGTTGTTGGCTACAGAACTATTGATGTGCTTGTAACCGAAGAA 484 Query 397 TACCGTAATTCCCTTACTGGTATCAGGAACAGGGTTTGCCGTGGCGAGACTTGGACTGGT 456 ||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||| Sbjct 485 TACCGTAATTCCCTTACTGGTATCAGGAATAGGGTGTGCCGTGGAGAGACTTGGACTGGT 544 Query 457 CAGTTTCCGTTTCAGAAGAAAACAGGTGAACTATTCATGGCGTTGGTGACTAAAAGCCCT 516 ||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||| Sbjct 545 CAGTTTCCGTTTCAGAAGAAAACTGGTGAACTATTTATGGCTTTGGTGACTAAAAGCCCT 604 Query 517 GTGTATGAAAATGGTGAGCTGGTTGGTGTCGTTACTGTCTCGAGCGATGCAACACTTTTC 576 ||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||| Sbjct 605 GTGTATGAAAACGGTGAGCTGGTTGGTGTTGTTACTGTCTCGAGCGATGCAACCCTTTTC 664 Query 577 AATAGGATGCATCCATTAAGTAATGACCATCAACAGCAAGCTCGTAGTAATAATAGACAT 636 ||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||||| Sbjct 665 AATAGGATGCATCCACTAAGTAATGAGCATCAACAACAAGCTCGTAGTAATAATAGACAT 724 Query 637 GAATCAAACTTCAGAAAGCATCAGTGGCACCTCCCGAGGCCCCAGATCGCTGCAGGATCA 696 ||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||| |||| Sbjct 725 GAATCAAACTTGAGAAAACATCAGTGGCACCTCCCGAGGCCTCAGATCGCTGCAGCATCA 784 Query 697 CAGGTTCCAGTTGTCCCACCGTATTCATCAGCTGTTATTTCAAACCTGAAGGCTTCGAAG 756 ||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||| Sbjct 785 CAGGTTCCAGTTGTCCCACAATATTCATCAGCTGTTGCTTCAAACCTGAAGGCGTCGAAG 844 Query 757 CTTTTACCTCAGAGAAATGGAGATGATTCCTTCAATGCAAATCAAAATTCTAGGAGCCGA 816 ||| |||| |||||||||||||||||||||||||||| |||||| ||||| ||||||||| Sbjct 845 CTTCTACCACAGAGAAATGGAGATGATTCCTTCAATGGAAATCATAATTCGAGGAGCCGA 904 Query 817 GATGAAAATGTTCCGGTTGTTGCCTCTTCAACTTTCGAGAAGTATGGCTCACTGGCGGAT 876 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 905 GATGAAAATGTTCCGGTTGTTGCCTCCACAACTTTCGAGAAGTATGGCTCACTGGCGGAT 964 Query 877 AAGTTTTTGGGAAAGCTGCAAAGGAAGATTACTGGCAGCCAAGGAAATGAAGATAATGAG 936 ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 965 AAGTTTTTGGGGAAGCTGCAAAGGAAGATTACTGGCAGCCAAGGAACCGAAGATAATGAG 1024 Query 937 CCTCTCTTAGGAAACGGTATAAATAAGTCAGCATGTGGCAGTGGAGCTAGTTCTAAAGCT 996 ||| ||||| |||||||||| ||||||||||||||||||||||||| ||||||||| ||| Sbjct 1025 CCTATCTTAAGAAACGGTATCAATAAGTCAGCATGTGGCAGTGGAGGTAGTTCTAAGGCT 1084 Query 997 TCTAATGCAGTTACCTGCACGGCTTTCAGAGACAATGGCAATGGAAAACCAAAAAGGGCT 1056 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1085 TCTAATGCAGTTACCTGCACGGCTTTCAGAGACAATGGCAATGGAAAACCAAAAAGGGCT 1144 Query 1057 GAAGTTAGATTTTCAGATGTCTATGGGAATGGAGCTGAGGGTTTGATACACAATGGAGAC 1116 ||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||| Sbjct 1145 GAAGTTAGAATTTCAGATGTCTATGGAAATGGAGCTGAGGGTTTGATACATAATGGAGAT 1204 Query 1117 CGCTTTCAGTATATTGGGAACCTGGGACAAGGGAAACCTCCCAGAGGACTAGAGAGTGGT 1176 |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| Sbjct 1205 CGCTTTCAGTATATTGGGAACCTGGGACAAAGTAAACCTCCCAGAGGACTAGAGAGTGGT 1264 Query 1177 TTGGTGTCTGGCGTGCGGGGAACAAAAATGTCGGACCTAAATGGTGAGATAGAAGATGCT 1236 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1265 TTGGTGTCTGGCATGCGGGGAACAAAAATGTCGGACCTAAATGGTGAGATAGAAGATGCT 1324 Query 1237 TGGAATACTCGTCCTAGTGACGATCCCTTGCCAATTCTTGGGGTTAACATCGGTAGGCGA 1296 ||||||||||||| ||||| ||||||||||||||||| || || |||| |||||||| | Sbjct 1325 TGGAATACTCGTCTTAGTGTTGATCCCTTGCCAATTCTAGGAGTCAACAGCGGTAGGCAA 1384 Query 1297 CAAAGTCCTGCT-AACCAAGGGAATAATAGATTAGTTACCAATTCGTCATGTGAGATACG 1355 |||||||||| | |||||| ||||||||||||||||||| ||||||||||||||||||| Sbjct 1385 CAAAGTCCTG-TCAACCAAAGGAATAATAGATTAGTTACTGATTCGTCATGTGAGATACG 1443 Query 1356 ATGGGAAGATCTACAACTTGGGGAGGAGGTCGGACGAGGTTCATTTGCTGCGGTTCATCG 1415 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1444 ATGGGAAGATCTACAACTTGGGGAGGAGGTCGGAAGAGGTTCATTTGCTGCGGTTCATCG 1503 Query 1416 TGGAGTTTGGAATGGATCAGATGTTGCTATTAAGGTTTACTTCGAGGGTGATTACAATGC 1475 |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct 1504 TGGAGTTTGGAATGGATCGGATGTTGCTATTAAGGTTTACTTCGATGGTGATTACAATGC 1563 Query 1476 GATGACTTTGACGGAGTGCAAAAAGGAGATCAACATTATGAAGAAACTGAGACATCCGAA 1535 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1564 GATGACTTTGACGGAGTGCAAAAAGGAGATCAACATTATGAAGAAACTGAGACATCCGAA 1623 Query 1536 TGTGCTGTTATTTATGGGCGCGGTATGTACAGAAGAAAAATCTGCCATAATCATGGAGTA 1595 |||||| |||||||||| || ||||||||||||||||||||||||||||||||||| || Sbjct 1624 TGTGCTACTATTTATGGGAGCAGTATGTACAGAAGAAAAATCTGCCATAATCATGGAATA 1683 Query 1596 TATGCCAAGAGGGAGTCTCTTCAAAATACTTCATAATACGAATCAACCATTGGACAAGAA 1655 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1684 TATGCCAAGAGGGAGTCTCTTCAAAATACTTCATAATACGAATCAGCCATTGGACAAGAA 1743 Query 1656 ACGCCGTTTAAGAATGGCCCTTGATGTTGCTAGGGGAATGAATTACTTACACCGCAGAAA 1715 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1744 ACGCCGTTTAAGAATGGCCCTTGATGTTGCTAGGGGAATGAATTACTTACACCGCAGAAA 1803 Query 1716 TCCGCCAATAGTACATAGAGACTTGAAATCTTCCAATCTACTCGTGGAC-AGAAATTGGA 1774 ||||||||| ||||||||||||||||||||||||||||||||||||||| || || |||| Sbjct 1804 TCCGCCAATTGTACATAGAGACTTGAAATCTTCCAATCTACTCGTGGACAAG-AACTGGA 1862 Query 1775 ATGTCAAGGTTGGAGACTTTGGGTTGTCAAAGTGGAAGAACGCAACCTTCTTGAGTACTA 1834 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1863 ATGTCAAGGTTGGAGACTTTGGGTTATCAAAGTGGAAGAACGCAACCTTCTTGAGTACTA 1922 Query 1835 AATCCGGGAAAGGAACTCCGCAGTGGATGGCTCCTGAAGTTCTCAGAAGTGAACCTTCGA 1894 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1923 AATCCGGGAAAGGAACTCCGCAGTGGATGGCTCCTGAAGTTCTCAGAAGTGAACCTTCGA 1982 Query 1895 ATGAGAAGTGTGATGTATTTAGCTTTGGTGTCATCTTATGGGAGCTAATGACTACTTTAA 1954 |||||||||||||||| || |||||||| |||||||||||||||||||||||||| ||| Sbjct 1983 ATGAGAAGTGTGATGTGTTCAGCTTTGGAGTCATCTTATGGGAGCTAATGACTACGTTAG 2042 Query 1955 TACCATGGGACCGTTTAAACTCTATTCAGGTTGTTGGAGTTGTTGGGTTCATGGATCGAC 2014 |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| Sbjct 2043 TACCATGGGACCGTTTGAACTCTATTCAGGTTGTTGGAGTTGTTGGTTTCATGGATCGAC 2102 Query 2015 GTTTAGACTTACCAGAAGGTTTAAATCCCCGGATCGCATCCATAATACAGGATTGCTGGC 2074 | ||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||| Sbjct 2103 GATTAGACTTACCTGAAGGATTAAATCCCCGGATCGCATCCATAATACAGGATTGTTGGC 2162 Query 2075 AAACTGATCCAGCAAAACGACCGTCGTTTGAGGAACTAATTAGTCAGATGATGAGCCTGT 2134 |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| Sbjct 2163 AAACTGATCCAGCAAAACGACCGTCGTTCGAGGAATTAATTAGTCAGATGATGAGCCTGT 2222 Query 2135 TCCGCAAACCGGGGTCAGGTGTGCAAGAAGACGACGATTGA 2175 |||||||||| |||||||||| ||||||||| ||||||||| Sbjct 2223 TCCGCAAACCAGGGTCAGGTGCGCAAGAAGAAGACGATTGA 2263 Score = 241 bits (130), Expect = 3e-62 Identities = 142/148 (96%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 1 ATGGCCGGAAACAACTCGGAATCGAGTCTCTACCAGGTTTTGGTGGAGTGGTGTCAGAGA 60 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 53 ATGGCCGGAAACAACTCGGAATCGAGTCTCTACCAGGTTTTGGTGGAGTGGTGTCAGAGG 112 Query 61 ATGGAGACGAGTCAAGCGAGACTAAGGGAGGATGTGGAGGACTTATTGCTTCAGGATGAG 120 ||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||| Sbjct 113 ATGGAGACGAGTCAAGCGAGACTAAGGGAGGATGTTGATGACTTATTGCTTCAGGAGGAG 172 Query 121 AGTCGAACCGGCAAGGAATCGGCGGCGG 148 ||||||||||| |||||||||||| ||| Sbjct 173 AGTCGAACCGGTAAGGAATCGGCGACGG 200 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 107880971205 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5