BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg889865
Length=1509
Score E
Sequences producing significant alignments: (Bits) Value
AT4G23030.1 | Symbols: | MATE efflux family protein | chr4:120... 2385 0.0
> AT4G23030.1 | Symbols: | MATE efflux family protein | chr4:12072857-12074365
FORWARD LENGTH=1509
Length=1509
Score = 2385 bits (1291), Expect = 0.0
Identities = 1430/1498 (95%), Gaps = 6/1498 (0%)
Strand=Plus/Plus
Query 1 ATGGCAGCTCCTTTG-T--TGATCATCAAGAACCAAACAGATCACCGACAAGATCCGAAT 57
||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCAGCTCCTTTGTTGATGATCATCAAGAACCAAACAGATCACCGACAAGATCCGAAT 60
Query 58 TCGAACCCGACTCATCTCTCCTCTTCGATCCAAGAAGCCAAATCAATCGCCAAAATATCT 117
|||||||||| || || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CCGAACCCGACCCACCTTTCCTCTTCGATCCAAGAAGCCAAATCAATCGCCAAAATATCT 120
Query 118 CTCCCACTGATCTTAACCGGTTTACTtctctactctcgctcaatgatctcaatgctcttc 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CTCCCACTGATCTTAACCGGTTTACTTCTCTACTCTCGCTCAATGATCTCAATGCTCTTC 180
Query 178 ctcgggcgtctcaacgatctctctgctctctcCGGTGGCTCACTCGCCCTCGGCTTCGCC 237
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 181 CTCGGCCGTCTCAACGATCTCTCTGCTCTTTCCGGTGGCTCACTCGCCCTCGGCTTCGCT 240
Query 238 AACATCACCGGTTACTCTCTCCTCTCCGGTCTCTCCATCGGCATGGAACCCATCTGCGTT 297
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 241 AACATCACGGGTTACTCTCTCCTCTCCGGTCTCTCTATCGGCATGGAACCCATCTGCGTT 300
Query 298 CAAGCCTTTGGCGCCAAAAGATTCAAACTTTTAGGCCTTGCTTTGCAAAGAACCACACTT 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CAAGCCTTTGGCGCCAAAAGATTCAAACTTTTAGGCCTTGCTTTGCAAAGAACCACACTT 360
Query 358 TTGcttctcctctgttctcttcccatctctctcctctggctcaacatcaagaacatcctt 417
|||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||
Sbjct 361 TTGCTTCTCCTCTGTTCTCTTCCCATATCTATCCTCTGGCTCAACATCAAGAAGATCCTT 420
Query 418 ctcttcttcGGACAAGACGAAGAAATCTCGAACCAAGCTGAGATCTTTATTCTCTTCTCT 477
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 421 CTCTTCTTCGGACAAGACGAAGAAATCTCAAACCAAGCTGAGATCTTTATCCTCTTCTCT 480
Query 478 CTCCCTGATCTGATTCTTCAATCTTTTTTGCATCCTATCCGTATTTACCTCCGATCTCAA 537
|||||||||||||| || ||||||||||| |||||||||||||| |||||||||||||||
Sbjct 481 CTCCCTGATCTGATCCTCCAATCTTTTTTACATCCTATCCGTATCTACCTCCGATCTCAA 540
Query 538 TCGATCACTCTTCCTCTTACCTACTCTGCTTTCTTCGCCGTGTTACTCCACATTCCGATT 597
||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||
Sbjct 541 TCGATCACTCTTCCTCTAACCTACTCTGCTTTCTTCGCAGTATTACTCCACATTCCGATT 600
Query 598 AATTACCTTCTCGTTTCTTCCCTCGGCCTCGGCCTTAAAGGAGTCGCCTTGGGAGCAATC 657
|| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 601 AACTACCTTCTCGTTTCTTCTCTCGGTCTCGGCCTTAAAGGAGTCGCCTTGGGAGCAATC 660
Query 658 TGGACTAATGTCAATCTTCTAGGGTTTCTAATCATCTACATCGTGTTTTCCGGTGTTTAC 717
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 661 TGGACTAATGTCAATCTCCTAGGGTTTCTAATCATCTACATAGTGTTTTCCGGTGTTTAC 720
Query 718 GAGAAGACTTGGGGAGGATTCTCATTGGATTGCTTTAAAGGATGGAGATCTTTGATGAAA 777
||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||
Sbjct 721 CAGAAGACTTGGGGAGGATTCTCAATGGATTGCTTTAAAGGATGGAGATCTCTAATGAAA 780
Query 778 CTAGCAATCCCTAGCTGCGTCTCGGTTTGTCTAGAATGGTGGTGGTATGAAATCATGATT 837
||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 781 CTAGCCATCCCTAGCTGCGTCTCGGTTTGTTTAGAGTGGTGGTGGTATGAAATCATGATT 840
Query 838 CTTCTCTGTGGGTTGTTACTTAACCCGCAAGCAACCGTGGCATCTATGGGAATCTTGATC 897
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 CTTCTATGTGGATTGTTACTTAACCCGCAAGCAACCGTGGCATCTATGGGAATCTTGATC 900
Query 898 CAAACAACCGCGTTGATCTACATTTTCCCTTCCTCTCTGAGTATCAGCGTTTCGACACGT 957
||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 901 CAAACCACCGCTTTGATCTACATTTTCCCTTCCTCTCTGAGTATCAGCGTATCGACACGT 960
Query 958 GTCGGGAATGAACTAGGTGCGAATCAGCCTGATAAAGCGAGGATAGCAGCGAGAACCGGA 1017
|||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 961 GTCGGGAATGAATTAGGTGCGAATCAGCCTGATAAAGCGAGGATAGCTGCGAGAACCGGA 1020
Query 1018 CTTGGTTTAAGCCTAGGTTTAGGTCTAATCGCCATGTTTTTCGCTTTCATGGTGAGGAAT 1077
||| |||||||||| ||||||||| || | || |||||||||||||| ||||||||||||
Sbjct 1021 CTTAGTTTAAGCCTTGGTTTAGGTTTATTGGCAATGTTTTTCGCTTTGATGGTGAGGAAT 1080
Query 1078 TGCTGGGCTAGATTGTTCACGGATGAGGAAGAGATTGTGAAGTTGACTTCTATGGTTTTA 1137
|||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1081 TGCTGGGCAAGATTGTTCACAGATGAGGAAGAGATTGTGAAGTTGACTTCAATGGTTTTA 1140
Query 1138 CCGATCATCGGGCTTTGCGAGCTAGGAAACTGTCCTCAGACTACAGTGTGTGGAGTGTTG 1197
||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 1141 CCGATCATCGGGCTTTGCGAGCTAGGAAACTGTCCTCAGACCACATTGTGTGGAGTGTTG 1200
Query 1198 AGAGGAAGTGCGAGACCTAAATTAGGAGCAAACATAAACTTGTGTTGTTTCTACTTTGTG 1257
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1201 AGAGGAAGTGCGAGACCTAAGTTAGGAGCAAACATAAACTTGTGTTGTTTCTACTTTGTG 1260
Query 1258 GGAATGCCTGTTGCTATATGGTTAAGTTTCTTTAGCGGGTTTGACTTCAAAGGACTATGG 1317
|||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 GGAATGCCAGTGGCTGTATGGTTAAGTTTCTTTAGCGGGTTTGACTTCAAAGGACTATGG 1320
Query 1318 CTCGGTCTGTTTGCAGCGCAAGGCTCGTGCCTGGTTTCGATGTTGGTCGTGTTGGCTAGG 1377
|||||||| |||||||| ||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1321 CTCGGTCTATTTGCAGCACAAGGCTCGTGCCTGATTTCGATGCTGGTCGTGTTGGCTAGG 1380
Query 1378 ACTGATTGGGAAGTTGAGGTTCATAGAGCAAAAGAACTCATGACTAGATCATGTGATGGT 1437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 ACTGATTGGGAAGTTGAGGTTCATAGAGCAAAAGAACTCATGACTAGATCATGTGATGGT 1440
Query 1438 GATGAAGATGATGGTAACACGACACCGTTTTTGTTGGATTCTTTGGATATAGAAGAAA 1495
||||||||||||||||| || || | |||||| |||||||||||||||||||||||||
Sbjct 1441 GATGAAGATGATGGTAATAC-AC-C-GTTTTTATTGGATTCTTTGGATATAGAAGAAA 1495
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74447408235
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5