BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg889875
Length=1479
Score E
Sequences producing significant alignments: (Bits) Value
AT4G22940.1 | Symbols: | Protein kinase superfamily protein | ... 1954 0.0
> AT4G22940.1 | Symbols: | Protein kinase superfamily protein
| chr4:12021763-12023467 REVERSE LENGTH=1377
Length=1377
Score = 1954 bits (1058), Expect = 0.0
Identities = 1274/1377 (93%), Gaps = 20/1377 (1%)
Strand=Plus/Plus
Query 1 ATGGGTTGTATCATTTCTTCTCGGAAGAAGAAACCGGC-G-A-CAAAAGGGTTGCCGGAA 57
||||||||||||||||||| ||||| ||| |||||||| | | ||| ||| |||||||||
Sbjct 1 ATGGGTTGTATCATTTCTTATCGGAGGAATAAACCGGCGGCACCAACAGGATTGCCGGAA 60
Query 58 ATCCGTCCTCGGTTCCATACTCTTCCATCAGAAAGAAGAATAGCTGAA-GATGACGCCCC 116
| ||||||||| |||||||||||||||||||||||||||||||| || ||| | ||||
Sbjct 61 AACCGTCCTCGTTTCCATACTCTTCCATCAGAAAGAAGAATAGC-AAATGATCAAGCCCA 119
Query 117 AAAGGT-ATCAGAATTGTTGAAGATGAGTCATGATAAGTTAGGTTCC-AAGGAGCTGAAG 174
|||||| | ||||||||||||||||||| |||||| ||||| ||| ||||||||||||
Sbjct 120 AAAGGTGA-CAGAATTGTTGAAGATGAG---TGATAAATTAGG-TCCAAAGGAGCTGAAG 174
Query 175 AGAGAAGAAAGTGTTCTTGTTGTTAATGTTCATCCTAGGTCATCGGAATTAGCTGCCTCC 234
|||||||||||| |||| |||||||||||||||||| | ||||||||||||||||||||
Sbjct 175 AGAGAAGAAAGTATTCTCGTTGTTAATGTTCATCCTCGCTCATCGGAATTAGCTGCCTCT 234
Query 235 GGTTGGCCACCGTGGCTTATCTCTGTTGCTGGTGAAGCCCTTGTCGGTTGGATCCCTGGC 294
|||||||||||||||||||| ||||| ||||||||||||||||| ||||||| ||||||
Sbjct 235 GGTTGGCCACCGTGGCTTATTTCTGTAGCTGGTGAAGCCCTTGTTGGTTGGACCCCTGGT 294
Query 295 CGTGAATCTAACTTTGAGAAGCAAGAACAGATTGGGGGAGGAACATTCAGTAAGGTGTTC 354
||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 295 CGTGAATCTCACTTTGAGAAGCAAGAACAAATTGGGGGAGGAACATTCAGTAAGGTGTTC 354
Query 355 AAAGCTAGAGATCTCCTCCGTAACAAGACCATGGCTTTGAAGAGAATCCGGTTCGATCTC 414
|||||||||||||| || |||||||||||| |||||||||||||||||||||||||| ||
Sbjct 355 AAAGCTAGAGATCTTCTTCGTAACAAGACCGTGGCTTTGAAGAGAATCCGGTTCGATATC 414
Query 415 AACAACTCAGAAAGCATCAAATGTATAGCCAGAGAGATCATAATCCTGCGCAAGTTGGAT 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 AACAACTCAGAAAGCATCAAATGTATAGCCAGAGAGATCATAATCCTGCGCAAGTTGGAT 474
Query 475 CATCCAAATGTCATTAAATTGGAAGGGTTGATGCTCGTAGACCACGATTCTTCAACCCTT 534
||||| |||||||| ||||| |||||||| ||||| |||||||||||||| || ||||||
Sbjct 475 CATCCCAATGTCATCAAATTAGAAGGGTTAATGCTTGTAGACCACGATTCCTCTACCCTT 534
Query 535 TACCTGATCTTTGAGTACATGGAACATGACCTCTTGGGACTCTCTTCATTACTCGGTGTC 594
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 TACCTGATCTTTGAGTACATGGAACATGACCTCTTGGGACTCTCTTCATTACTCGGTGTA 594
Query 595 CAATTCACAGAACCTCAAGTTAAATGCTACATGAAGCAGCTCTTAAGAGGGCTTGATCAT 654
|| ||| |||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 595 CATTTCTCAGAACCTCAGGTTAAATGCTACATGAGGCAGCTCTTAAGAGGGCTTGATCAT 654
Query 655 TGTCACACTAATCATGTACTCCATCGGGATATAAAAAGCTCGAACCTTCTGATCAACGGT 714
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 655 TGTCACACTAATCATGTACTCCATCGGGATATGAAAAGCTCGAACCTTCTGATCAACGGT 714
Query 715 AATGGAGTCCTCAAGCTTACAGATTTTGGATTATCTACGTTCTTCGATCCTCATAACAGT 774
|||||||||||||| || |||||||||| ||| ||||||||||||||||||||||||||
Sbjct 715 GATGGAGTCCTCAAGATTGCAGATTTTGGGTTAGCTACGTTCTTCGATCCTCATAACAGT 774
Query 775 GTTCCCTAGATAACCCATGTTGCAACTCTATGGTATCGACCTCCTGAGCTTTTGCTTGGA 834
||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 GTTCCTTTGACAACCCATGTTGCAACTCTATGGTATCGACCTCCTGAGCTTTTGCTTGGA 834
Query 835 GCTTCTCATTACGGTGTTGG-GATTGACTTGTGGAGCACAGGCTGCGTGATAGGTGAATT 893
||||||||||||||| |||| | ||||||||||||||||||||||||| |||||||||||
Sbjct 835 GCTTCTCATTACGGTATTGGAG-TTGACTTGTGGAGCACAGGCTGCGTAATAGGTGAATT 893
Query 894 ATATGCCGGAAAGCCTATTCTTCTTGGAAAAAATGAGACACACCAACTGCACAAGATATT 953
||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 894 ATATGCCGGAAAGCCTATTCTTCCAGGAAAAAATGAGACAGACCAACTGCACAAGATATT 953
Query 954 CCAGTTGTGTGGATCGCCTTCAGAGGATTATTGGACAAAACTAAAGCTGCAGCTTTCAAC 1013
| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 954 CAAGTTGTGTGGATCGCCTTCAGATGATTATTGGACAAAACTAAAGCTACAGCTTTCAAC 1013
Query 1014 TCCACTGAGACCCATGTTTCCATATGGATCACATATAGCAGAGAGATTTAAACAGTTTCC 1073
||||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||
Sbjct 1014 TCCACTGAGACCCATCTATCCATATGGATCACATATAGCAGAGACATTTAAACAGTTTCC 1073
Query 1074 AACTTCTGTTACTTCACTCCTAGAAACTTTGCTCTCAATAGATCCAGATTTTCGAGGCAC 1133
| |||| |||| ||| ||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 1074 AGCTTCAGTTATTTCGCTCTTAGAAACTTTGCTCTCAATAGATCCAGATTTCCGAGGCAC 1133
Query 1134 TGCAGCTAGTGCTCTCAAGAGTAAGTACTTTAAAACTGAGCCATTGGCGTGTGATCCATC 1193
|||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||
Sbjct 1134 TGCAGCTAGTGCTCTCAAGAGTAAATACTTCAAAACTGAGCCATTGGCTTGTGATCCATC 1193
Query 1194 TTGTCTACCAAAATACCCTCCCAGTAAGGAAATCAACATTA-GAATGCGCGATAAAACTA 1252
||||||||||||||||||| | ||||||||||||||||| | || |||||||||| ||||
Sbjct 1194 TTGTCTACCAAAATACCCTTCAAGTAAGGAAATCAACATCAAGA-TGCGCGATAACACTA 1252
Query 1253 GAAAACAAGCTTCACAAATTAGAAGAACAGGCGAAACTCAAGCTGTCCAGCCAATTCTAG 1312
||||||||||||||||||| |||||||||| |||| |||||||||| |||||||||||||
Sbjct 1253 GAAAACAAGCTTCACAAATAAGAAGAACAGACGAAGCTCAAGCTGTTCAGCCAATTCTAG 1312
Query 1313 CAGACCCTTCTCTCACAAAGCCGGTGCAGGTATCTCT--ACTCTTTA-GGTTACTTG 1366
|||| | |||| |||||||||| ||||||||||||| |||||| | |||| ||||
Sbjct 1313 CAGATTCGTCTCCCACAAAGCCGATGCAGGTATCTCTCTACTCTT-ACGGTTTCTTG 1368
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72941391885
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5