BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg889885

Length=411
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G28030.1 | Symbols:  | Acyl-CoA N-acyltransferases (NAT) sup...   486    6e-137


> AT4G28030.1 | Symbols:  | Acyl-CoA N-acyltransferases (NAT) superfamily 
protein | chr4:13937676-13939144 REVERSE LENGTH=910
Length=910

 Score =  486 bits (263),  Expect = 6e-137
 Identities = 337/370 (91%), Gaps = 16/370 (4%)
 Strand=Plus/Plus

Query  32   AGTTCTCTGATGGCATTGAAGACAGAGTTGTGGTGGGGAGCCTTGATCTTAACCAATGCC  91
            |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
Sbjct  441  AGTTCTCTGATGGCATAGAAGACAGAGTTGTGGTGGGAAGCCTTGATCTTAACCAATGTC  500

Query  92   GTTGGCTTCCTGATGAAATTGCTGGAACAAAACCAGAGGGGATTGGTGTGGATTTTGCGA  151
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  501  GTTGGCTTCCTGATGAAATTGCTGGAACAAAACCAGAGGGGATTGGTGTGGATTTTGCTA  560

Query  152  GAGCATACTTAAGCAATGTCTGTGTTGCAAAAGAGCTGCATCGTAATGGAGTTGGTTACA  211
            |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  561  GAGCATACTTGAGCAACGTCTGTGTTGCAAAAGAGCTGCATCGTAATGGAGTTGGTTACA  620

Query  212  AACTCATTGATAAGTCCAAGAGAGT-G--GG---------CATAACGGATATGTACGTGC  259
            |||| ||||| ||||| |||||||| |  ||         ||||||||||||||||||||
Sbjct  621  AACTTATTGACAAGTCTAAGAGAGTTGCTGGAGAATGGGGCATAACGGATATGTACGTGC  680

Query  260  ATGTGATGGTAGCCAATGAAGCAGC-ACAGAGGCTATACATGAAAAGCGGGATCGAGCAA  318
            |||||| ||||| |||||||||||| | |||| |||||||||||||| ||| | ||||||
Sbjct  681  ATGTGACGGTAGACAATGAAGCAGCGA-AGAGTCTATACATGAAAAGTGGGTTTGAGCAA  739

Query  319  GAGACTGCTGAGC-AGCGTGGCAAGCTCGATACCTCAATAGACCACAACGGCTCCTCCTC  377
            ||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  740  GAGACCGCTGAGCCAGCGTGGCAAGCTCGATACCTCAATAGGCCACAACGGCTCCTCCTC  799

Query  378  TGGCTCCGCC  387
            |||||| |||
Sbjct  800  TGGCTC-GCC  808



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19453618863


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5