BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg889891 Length=243 Score E Sequences producing significant alignments: (Bits) Value AT4G17960.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 322 1e-87 > AT4G17960.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G46620.1); Has 46 Blast hits to 45 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:9970847-9972457 FORWARD LENGTH=1002 Length=1002 Score = 322 bits (174), Expect = 1e-87 Identities = 208/224 (93%), Gaps = 4/224 (2%) Strand=Plus/Plus Query 22 AAACGGCTAAGGGTTGATGAAGATGGAGATGTTGCGGTTGAGTTTTTGGAAGAAGGGGAG 81 ||||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||| Sbjct 551 AAACGGCTAAGGGTTGATGAAGATGGAGATGTTGCAGATGAGTTTTTGGAAGAAGGAGAG 610 Query 82 AAA-CAGA-TAAACTCAGAAGATGATCATAATTGTATTAAGACTATGCCAAAACTCCAAA 139 ||| | || | ||| |||||||||||||||| ||||||||||||||||||| | |||||| Sbjct 611 AAATC-GACT-AACGCAGAAGATGATCATAACTGTATTAAGACTATGCCAAGATTCCAAA 668 Query 140 TTAAACACAAAACGAAACCTGCAAAAGTAAGAGGACTAGTTGTGTCTTCTGATGGGAAAC 199 |||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||| Sbjct 669 TTAAACGCAAAACGAAGCCTGTAAAAGTAAGAGGACTAGTTGTGTCTTCTGATGGGAAAC 728 Query 200 TCCAGCAATGCATTGAACATCAAGGAAGATTACTTATAGTATGA 243 |||||||||||||||||||||||||||| ||| ||||||||||| Sbjct 729 TCCAGCAATGCATTGAACATCAAGGAAGGTTATTTATAGTATGA 772 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 11008637031 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5