BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg889891

Length=243
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G17960.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   322    1e-87


> AT4G17960.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT5G46620.1); 
Has 46 Blast hits to 45 proteins in 13 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 46; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:9970847-9972457 
FORWARD LENGTH=1002
Length=1002

 Score =  322 bits (174),  Expect = 1e-87
 Identities = 208/224 (93%), Gaps = 4/224 (2%)
 Strand=Plus/Plus

Query  22   AAACGGCTAAGGGTTGATGAAGATGGAGATGTTGCGGTTGAGTTTTTGGAAGAAGGGGAG  81
            ||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |||
Sbjct  551  AAACGGCTAAGGGTTGATGAAGATGGAGATGTTGCAGATGAGTTTTTGGAAGAAGGAGAG  610

Query  82   AAA-CAGA-TAAACTCAGAAGATGATCATAATTGTATTAAGACTATGCCAAAACTCCAAA  139
            ||| | || | ||| |||||||||||||||| ||||||||||||||||||| | ||||||
Sbjct  611  AAATC-GACT-AACGCAGAAGATGATCATAACTGTATTAAGACTATGCCAAGATTCCAAA  668

Query  140  TTAAACACAAAACGAAACCTGCAAAAGTAAGAGGACTAGTTGTGTCTTCTGATGGGAAAC  199
            |||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct  669  TTAAACGCAAAACGAAGCCTGTAAAAGTAAGAGGACTAGTTGTGTCTTCTGATGGGAAAC  728

Query  200  TCCAGCAATGCATTGAACATCAAGGAAGATTACTTATAGTATGA  243
            |||||||||||||||||||||||||||| ||| |||||||||||
Sbjct  729  TCCAGCAATGCATTGAACATCAAGGAAGGTTATTTATAGTATGA  772



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11008637031


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5