BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg889909

Length=534
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G22666.1 | Symbols:  | Bifunctional inhibitor/lipid-transfer...   372    2e-102


> AT4G22666.1 | Symbols:  | Bifunctional inhibitor/lipid-transfer 
protein/seed storage 2S albumin superfamily protein | chr4:11917057-11917879 
FORWARD LENGTH=733
Length=733

 Score =  372 bits (201),  Expect = 2e-102
 Identities = 221/231 (96%), Gaps = 0/231 (0%)
 Strand=Plus/Plus

Query  1    ATGGCTTACATTTACCAAATTTCAGCAGTTGTGTTTCTAGCGGTTGCGATTGCTCCGCTA  60
            |||||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  105  ATGGCTTACACTAACCAAATTTCAGCGGTTGTGTTTCTAGCGGTTGCGATTGCTCCGCTA  164

Query  61   TTAGCTGACCCACAGTCACCGATGTTTCCCGATATGACTCCTGAATGTGCCACGGTTATG  120
            |||||||| ||||||||| |||||||||| || |||||||||||||||||||||||||||
Sbjct  165  TTAGCTGAGCCACAGTCAACGATGTTTCCAGAGATGACTCCTGAATGTGCCACGGTTATG  224

Query  121  CCTGACCTGCTCGAAAAGTGTTTCGCAACCGGTAGTGTGACGCCAACAGAAGATTGCTGC  180
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  225  CCTGACCTGCTCGAAAAGTGTTTTGCAACCGGTAGTGTGACGCCAACAGAAGATTGCTGC  284

Query  181  ACCGATCTAAAATCCGCAACCTCAACGCAAGTCACTTGCCTTTGTGATAAC  231
            |||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct  285  ACCGATCTAAAATCCGCAACCTCAACGCAAGTGACTTGTCTTTGTGATAAC  335


 Score =  344 bits (186),  Expect = 5e-94
 Identities = 234/258 (91%), Gaps = 0/258 (0%)
 Strand=Plus/Plus

Query  275  GTGATAACTACATTGCAAATCCGGCCGTTGCGAACATCACTGGACCTTACTCCAAAGCAA  334
            ||||||||||||| ||||| || |||||| | |||||||| |||||||||||||||||||
Sbjct  328  GTGATAACTACATAGCAAACCCCGCCGTTTCAAACATCACCGGACCTTACTCCAAAGCAA  387

Query  335  TCACAACCAAATGCGGCGTTTTCGACAAATTCTCTTGCGACGGTACTAGTAAAGGAGGAG  394
            ||||||| ||||| |||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct  388  TCACAACTAAATGTGGCGTTTTCGACAAATACTCTTGTGACGGTACTAGTAAAGGAGGAG  447

Query  395  AAGAAAAGAAAGGAGGAAGCAGCAGTAGCAACGGCAAAGGCAATGGCACGAGTCAGGGAA  454
            ||||||||||||||||||||||||||||||| || |||| |||||||| |||| ||||||
Sbjct  448  AAGAAAAGAAAGGAGGAAGCAGCAGTAGCAATGGTAAAGACAATGGCAAGAGTGAGGGAA  507

Query  455  ATGGAGGAACAACGAACAAGGTTGCTGCATTAATGGCTATGTTTGGTTTGGTTGCAAGTC  514
            ||||||||| | |||||  ||||||||||| ||||||||||||||||||| |||||||||
Sbjct  508  ATGGAGGAAGAGCGAACTCGGTTGCTGCATCAATGGCTATGTTTGGTTTGCTTGCAAGTC  567

Query  515  TGGTCTTTGTTATGTTTT  532
            | ||||| || |||||||
Sbjct  568  TCGTCTTCGTAATGTTTT  585



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25569180823


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5