BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg889930
Length=879
Score E
Sequences producing significant alignments: (Bits) Value
AT4G28850.1 | Symbols: XTH26, ATXTH26 | xyloglucan endotransglu... 1247 0.0
> AT4G28850.1 | Symbols: XTH26, ATXTH26 | xyloglucan endotransglucosylase/hydrolase
26 | chr4:14244295-14245957 FORWARD LENGTH=1096
Length=1096
Score = 1247 bits (675), Expect = 0.0
Identities = 816/884 (92%), Gaps = 10/884 (1%)
Strand=Plus/Plus
Query 1 ATGGCTGGTCTTCGAGCGAAGACGTTAATGTTCGTTCTGGTGGCCGCGTTAGCGACTCTT 60
||||| ||||||| |||||||||||||||||||||||||| || || ||||||||||||
Sbjct 42 ATGGCGGGTCTTCAAGCGAAGACGTTAATGTTCGTTCTGGCAGCTGCCTTAGCGACTCTT 101
Query 61 GATCGCACATTTGTGGAGGCAGACTTCAGCAAGAATATGATTGTTACATGGGGTAAAGAT 120
| ||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||
Sbjct 102 GGTCGCACATTTGTGGAGGCAGACTTCAGTAAGAATTTTATTGTTACATGGGGTAAAGAT 161
Query 121 CATATTGGT-ATGACTGGTGGCAACCTTCGGCTTGTCCTAGACAAATCTGCAGGATCTGC 179
|| | || | |||| |||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 162 CACA-TGTTCATGAATGGTACCAACCTTCGACTTGTCCTAGACAAATCTGCAGGATCTGC 220
Query 180 TATTCGATCAAAGGTGGCTCATTTGTTTGGAAGTGTAGAAATGCTCATCAAACTTGTGCC 239
|||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 221 TATTAAATCAAAGGTGGCTCATTTGTTTGGAAGCGTAGAAATGCTCATCAAACTTGTGCC 280
Query 240 AGGGGATTCTGCTGGAACCGTTGTAGCCTATTACCTATCGTCCACGGGAAGTGCACACGA 299
|||| |||||||||||||||||| |||||||||| ||||||| ||||||||| |||||||
Sbjct 281 AGGGAATTCTGCTGGAACCGTTGCAGCCTATTACTTATCGTCTACGGGAAGTACACACGA 340
Query 300 TGAGATAGACTTTGAGTTCCTAGGAAATTCGACTGGTCAGCCGTACACGATCCACACCAA 359
|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 341 TGAGATAGACTTCGAGTTCCTAGGAAATGCGACTGGTCAGCCGTACACGATCCACACCAA 400
Query 360 -TATATATGTTCAAGGGAAAGGAAACCGTGAGCAACAATTCCGGCCATGGTTCAATCCGA 418
| |||||| |||||||||||||||||| || ||||||||||||||||||||||| ||||
Sbjct 401 CT-TATATGCTCAAGGGAAAGGAAACCGCGAACAACAATTCCGGCCATGGTTCAACCCGA 459
Query 419 CCAATGGTTTCCACAACTATACCATCCATTGGAACCCATCCGAAGTTGTGTGGTTCGTCG 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 460 CCAATGGTTTCCACAACTATACCATCCATTGGAACCCATCCGAAGTTGTGTGGTTCGTCG 519
Query 479 ATGGAACTCCGATCAGAGTATTTAGGAACTACGAGAA-AGAAGGAATCGCATACCCGAAC 537
||||||||||||||||||| ||||| |||||||| || |||||||||||||||||||||
Sbjct 520 ATGGAACTCCGATCAGAGTTTTTAGAAACTACGA-AAGTGAAGGAATCGCATACCCGAAC 578
Query 538 AAGCAAGGTATGAAAGTGTTTGCGAGTCTATGGAACGCAGACGACTGGGCAACCCAAGGG 597
||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 579 AAGCAAGGTATGAAAGTGTTTGCGAGTCTATGGAACGCAGAAGACTGGGCAACACAAGGA 638
Query 598 GGTCGAGTGAAGACCAACTGGACGCTAGCACCATTTGCGGCCGAGGGTCGTAGATACAAG 657
|||||||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 639 GGTCGAGTGAAGACTAACTGGACGCTAGCACCATTTGTGGCCGAGGGTCGTAGGTACAAG 698
Query 658 GCAAGAGCTTGTTTGTGGCGGGGGTC-GATCAGCATCAAACAATGCGCAGATCCAACTGT 716
|||||||||||||||||| ||| || | |||||||||| ||||| | |||||||||| |
Sbjct 699 GCAAGAGCTTGTTTGTGGAAGGGATCAG-TCAGCATCAAGCAATGTGTAGATCCAACTAT 757
Query 717 GCCGTCTAATTGGTGGACATCACCATCGTTTAGCCAGCTCACTGAATT-GCAGCTCACAA 775
| |||||||||||||||||||||||| ||||| |||||||||| || |||||| || |
Sbjct 758 ACGGTCTAATTGGTGGACATCACCATCATTTAGTCAGCTCACTGC-TTCGCAGCTGACGA 816
Query 776 AGATGCAAAAGATAAGAGATGGTTTCATGATATATGATTATTGCAAGGATACTAACAGAT 835
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 817 AGATGCAAAAGATAAGAGATGGTTTCATGATCTATGATTATTGCAAGGACACTAACAGAT 876
Query 836 TTCAAGGTGTTATGCCTCCGGAATGTTCGAAGATGCAATTCTAA 879
|| |||||||||||||||||||||| ||||||| ||||||||||
Sbjct 877 TTAAAGGTGTTATGCCTCCGGAATGCTCGAAGAAGCAATTCTAA 920
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42899961538
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5