BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg889950
Length=288
Score E
Sequences producing significant alignments: (Bits) Value
AT4G22235.1 | Symbols: | Arabidopsis defensin-like protein | c... 316 5e-86
> AT4G22235.1 | Symbols: | Arabidopsis defensin-like protein |
chr4:11763625-11764328 FORWARD LENGTH=615
Length=615
Score = 316 bits (171), Expect = 5e-86
Identities = 227/253 (90%), Gaps = 7/253 (3%)
Strand=Plus/Plus
Query 41 TTGCAGTAGTCGTTTGCCTCTCCATCCTCCTCATATCTCTTACAGAAGTGGATGGGTGGG 100
||||| |||||||||| |||||||||||||||||||||| || ||||||| |||| ||||
Sbjct 126 TTGCAATAGTCGTTTGTCTCTCCATCCTCCTCATATCTCCTATAGAAGTGAATGGATGGG 185
Query 101 GAAAGTGTGA-TTACCGAAAGGGTTTATGTAATACT-TCGGCCACGAGCTCCACTTGCGA 158
|||||||||| ||| ||||||||||||||| | ||| ||| ||||| ||| ||||||||
Sbjct 186 GAAAGTGTGACTTA-CGAAAGGGTTTATGT-AGACTCGCGGACACGATCTCTACTTGCGA 243
Query 159 TGAACCATGCAAGGTATTGGACAGCAAGTATCATGGAGGCGAATGTTTAAACGTTGGTGG 218
|| |||||||| || | |||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 244 TGTACCATGCAGGGCAGTGGACAGCAAGTATCATGGAGGCGAATGCTTAAATGTTGGTGG 303
Query 219 TGGTCAAGGGATATGTTGGTGCTGCCGTGATTATGATGC---AAAGAGTGGTGCTGAAAA 275
||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 304 TGGTCAAGGGATATGTTGGTGCTGCCGTGATTATGATGCTGCAAAGAGCGGTGCTGAAAA 363
Query 276 GGATAGCATGTGA 288
||| |||||||||
Sbjct 364 GGAAAGCATGTGA 376
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13270685736
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5