BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg889961
Length=1095
Score E
Sequences producing significant alignments: (Bits) Value
AT4G22170.1 | Symbols: | F-box family protein with a domain of... 1271 0.0
AT4G22660.1 | Symbols: | F-box family protein with a domain of... 340 1e-92
AT4G22165.1 | Symbols: | F-box family protein with a domain of... 303 2e-81
AT4G22180.1 | Symbols: | F-box family protein with a domain of... 279 3e-74
AT4G22185.1 | Symbols: | pseudogene, similar to P0537A05.16, s... 217 2e-55
AT4G14165.1 | Symbols: | F-box family protein-related | chr4:8... 141 1e-32
> AT4G22170.1 | Symbols: | F-box family protein with a domain
of unknown function (DUF295) | chr4:11736653-11737744 FORWARD
LENGTH=1092
Length=1092
Score = 1271 bits (688), Expect = 0.0
Identities = 980/1115 (88%), Gaps = 43/1115 (4%)
Strand=Plus/Plus
Query 1 ATGGAGAAG-AACTATAACCCTAATTCTTGGTCGGAGCTTCCTCTA-GATCTCTTGAACT 58
||||||| | ||| ||||||||||||| ||||| || ||||||| | |||||||||||||
Sbjct 1 ATGGAGAGGAAAC-ATAACCCTAATTCCTGGTCTGATCTTCCTC-ACGATCTCTTGAACT 58
Query 59 TAGTTTTCGAACGCCTCAGCTTTGCTAATTTCCAA-CGAGCTAAATCAGTGTGTTCGTCT 117
| || |||||||||||||||||||||||||| ||| ||||| | || ||||||||||||
Sbjct 59 TGGTGTTCGAACGCCTCAGCTTTGCTAATTT-CAACCGAGCCAGGTCCGTGTGTTCGTCT 117
Query 118 TGGTACTCTGCTTCCAGACAAGTC-GTGCCAAAAAATCATATCCATTGGCTGATTCTCTT 176
|||||||||||||| |||||| || ||||| |||||||| ||||||||||||||||||||
Sbjct 118 TGGTACTCTGCTTCGAGACAA-TCGGTGCCCAAAAATCAGATCCATTGGCTGATTCTCTT 176
Query 177 CCCTCG-AGAAaacaacaacaacaacaaAAATTCATGCACGTTGTTCAATCCCGAGGAAA 235
|||| | ||| ||||||||||| ||||| | |||||||||||||||||||||||| ||||
Sbjct 177 CCCT-GAAGACAACAACAACAAGAACAACAGTTCATGCACGTTGTTCAATCCCGATGAAA 235
Query 236 AAGAAAAACTTTACAAAACCCAAGATTTTGATCTTGGTGAAGAATTTGCAAA-ATGTGAA 294
|||| |||||||||||||| | | | |||||| ||| ||||||||||| | |||
Sbjct 236 AAGACAAACTTTACAAAACGC-A-A----CATCTTGATGAGGAATTTGCAAAGA-GTGTT 288
Query 295 TGTAGGGCAACCTATGGAAGTTGGCTT-CTAATGCAAGATCCTCTGTTTAATCTCTACAT 353
|||||||||||||||||||||||| || |||||| ||||||||||||||||||||| ||
Sbjct 289 TGTAGGGCAACCTATGGAAGTTGG-TTCCTAATGGTAGATCCTCTGTTTAATCTCTATAT 347
Query 354 TGTGAATCTCTTTACCAACGAGAGGATCAATCTACTTCCCGTGGAGTTATTGTGGGAAGG 413
| |||||||||||||| |||||| |||||||||| ||||||||||||| ||||| |||
Sbjct 348 TTTGAATCTCTTTACCCGCGAGAGAATCAATCTACATCCCGTGGAGTTACTGTGGAAAGA 407
Query 414 TTATGAGTTAGGCGTTTCAGGTCGCAAAGGACGAATGAAGTCCAGAGGTGGGTATGTACG 473
||| ||||||||||||||| ||||| || ||||||||||| ||||||||| | |||||
Sbjct 408 TTACGAGTTAGGCGTTTCAAGTCGC-AA--CCGAATGAAGTCGAGAGGTGGGAACGTACG 464
Query 474 ATCTCCTGTGTTTTGGATTGACGAGAAAACCAAAGATTATGTAGTTCTTTGGGGACTTAG 533
|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 465 ATCTCCTGTGTTTTGGATTGACGAGATAACCAAAGATTATGTTGTTCTTTGGGGACTTAG 524
Query 534 AGATTGGTGTGTATTTTATTCCAAGAAAGGAGATACCTCTTGGAATCAAATCCCTCAAAC 593
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 525 AGATTGGTGTGTATTTTATTCCAAGAAAGGAGATACCTCCTGGAATCAAATCCCCCAAAC 584
Query 594 TCCAGATTGTTCCCGTATCCTTTACAAGGATCACAAGCTTTACTTCCTAGGCTACTTC-C 652
||||||||||| |||| | | |||||||||||||||||||||||||| |||||||||| |
Sbjct 585 TCCAGATTGTTACCGTTTGCGTTACAAGGATCACAAGCTTTACTTCCAAGGCTACTTCTC 644
Query 653 ATAGTTTCAAAATCTTCGATCTTTCTGGAGAGATCCCACAACAAATCTTTGACTCGAGTG 712
||||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||
Sbjct 645 -TAGTTTCAAAATCTTCGATCTTTCTGGAGAGATTCCACAACAAACCTTTGACTCGCTTG 703
Query 713 TTTG-GATAGACCATTTTTC-CTTACGTGGACGGGACGTTTGTACCACAACACTTGTAGT 770
||| | | ||||||| | | ||| ||| | ||| | ||| | ||||| | |||||||
Sbjct 704 TTTTTG-TGGACCATTGT-CACTTTCGTCGTTGGGTCCTTTATTCCACA-C--TTGTAGT 758
Query 771 CACACTCACAGGAAAAGTCCTCAAGGTTGAAAAAATGAGGGACAAG-TCCTTCAAGGTTT 829
|||||||||||||||||||||||| ||||||||||||| |||| | || |||| |||||
Sbjct 759 CACACTCACAGGAAAAGTCCTCAACGTTGAAAAAATGATGGACT-GCTCTTTCACGGTTT 817
Query 830 TCGAGGTTTATTCATCAAGAAGACGGATTCATTCTCTGGGAGATGAGTCAAtttttttGG 889
||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 818 TCGAGGTTTGTTCATCAGGAAGACGGATTCATTCTCTGGGAGATGAGTCAATTCTTTTGG 877
Query 890 ATCAAGGCATCACTGTGCCCGCCAATGACACTGATGGATTCATTAAAAATTCCATTTATT 949
| |||||||||||||||| ||||||||||||| |||||||||||| ||||||||| ||||
Sbjct 878 AACAAGGCATCACTGTGCTCGCCAATGACACTAATGGATTCATTAGAAATTCCATCTATT 937
Query 950 TCAGTAAT--T-GTTATAA-A---AA--GCACACAAAGGACATGTTTATCTTCAATCTTG 1000
||| |||| | || | || | || |||||| | ||||||||||||||||||||||
Sbjct 938 TCAATAATGATTGTGAAAACATTGAAAAGCACACTTACGACATGTTTATCTTCAATCTTG 997
Query 1001 AGACACATAAGACGGAGCCGCTGCATACATTTGATAGTTCTTCATTTCAATTCTCTAGAG 1060
||||||| ||||||||||| || || ||||||||||||||||||||||||||||||||||
Sbjct 998 AGACACAGAAGACGGAGCCACTACACACATTTGATAGTTCTTCATTTCAATTCTCTAGAG 1057
Query 1061 CTCAATGGTTCGTACCTAGTTTCACGCATAGATGA 1095
|||| |||||||||||||||||||||| || ||||
Sbjct 1058 CTCATTGGTTCGTACCTAGTTTCACGCTTACATGA 1092
> AT4G22660.1 | Symbols: | F-box family protein with a domain
of unknown function (DUF295) | chr4:11914981-11916171 REVERSE
LENGTH=1191
Length=1191
Score = 340 bits (184), Expect = 1e-92
Identities = 325/390 (83%), Gaps = 21/390 (5%)
Strand=Plus/Plus
Query 1 ATGGAGAAGAACTATAACCCTAATTCTTGGTCGGAGCTTCCTCTAGATCTCTTGAACTTA 60
|||||||||||| | ||||||||| | |||||||| ||||||||||||||||||||||||
Sbjct 1 ATGGAGAAGAACCAAAACCCTAATACCTGGTCGGATCTTCCTCTAGATCTCTTGAACTTA 60
Query 61 GTTTTCGAACGCCTCAGCTTTGCTAATTTCCAACGAGCTAAATCAGTGTGTTCGTCTTGG 120
|||||| |||||||||||||||||||||| | || ||| ||||| |||||||||||||||
Sbjct 61 GTTTTCAAACGCCTCAGCTTTGCTAATTTTCGACAAGCCAAATCGGTGTGTTCGTCTTGG 120
Query 121 TACTCTGCTTCCAGACAAGTC-GTGCCAAAAAATCATATCCATTGGCTGATTCTCTTCCC 179
||||||||||| | |||| || ||||| |||||||| |||| ||||||||| ||||||||
Sbjct 121 TACTCTGCTTCGAAACAA-TCCGTGCCCAAAAATCAGATCCCTTGGCTGATGCTCTTCCC 179
Query 180 TCGAGAAaacaacaacaacaacaaAAA---TTCATGCACG-TTGTT--CAATCCCGAGGA 233
| | || |||| |||||||||||||| |||||||||| || || ||||||||||||
Sbjct 180 -C-A-AAGACAAAAACAACAACAAAAACAGTTCATGCACGATTTTTTTCAATCCCGAGGA 236
Query 234 AAAAGAAAAACTTTACAAAACCCAAGATTTTGATCTTGGTGAAGAATTTGCAAA-ATGTG 292
||||| |||||||| |||| |||||| ||||||| ||||||||||| | |||
Sbjct 237 CAAAGACCAACTTTACCAAACGCAAGAT------CTTGGTGTTGAATTTGCAAAGA-GTG 289
Query 293 AATGTAGGGCAACCTATGGAAGTTGGCTTCTAATGCAAGATCCTCTGTTTAATCTCTACA 352
||| |||||||||||||||||||| || ||||||||| | || |||||| ||||
Sbjct 290 TTTGTCTAGCAACCTATGGAAGTTGGCTCCTGATGCAAGATTCAAAGTATAATCTATACA 349
Query 353 TTGTGAATCTCTTT-ACCAACGAGAGGATC 381
|| |||||| | || ||| |||||| ||||
Sbjct 350 TTTTGAATC-CATTCACCTACGAGAAGATC 378
Score = 122 bits (66), Expect = 5e-27
Identities = 169/217 (78%), Gaps = 13/217 (6%)
Strand=Plus/Plus
Query 478 CCTGTGTTTTGGATTGACGAGAAAACCAAAGATTATGTAGTTCTTTGGGGACTTAGAGAT 537
|||||||||||||||||||||||||||||||| || ||| ||| ||||| ||| || ||
Sbjct 508 CCTGTGTTTTGGATTGACGAGAAAACCAAAGAGTACATAGCTCTGTGGGGGCTTGGATAT 567
Query 538 TGGTGTGTATTTTATTCCAAGAAAGGAGATACCTCT-TGGAATCAAATCCCTCAAACTCC 596
|||||||| ||||| ||||||| ||||||| | | ||||||||||| || ||| |
Sbjct 568 TGGTGTGTGGTTTATGCCAAGAACGGAGATAAGT-TGTGGAATCAAATTCCAGAAATT-- 624
Query 597 AGATT-G-TTCCCGT-A--TCCTTTACAAGGATCACAAGCTTTACTTCCT--AGGCTACT 649
| || | ||| | | | | |||||||||||||||||||||||| | | || ||||
Sbjct 625 ATTTTAGATTCTCTTGACATGGTTTACAAGGATCACAAGCTTTACT-CATTTAG-CTACA 682
Query 650 TCCATAGTTTCAAAATCTTCGATCTTTCTGGAGAGAT 686
|| ||||| |||| | ||| |||||||||||||
Sbjct 683 GAAATCTTTTCACAATCCTAGATTTTTCTGGAGAGAT 719
> AT4G22165.1 | Symbols: | F-box family protein with a domain
of unknown function (DUF295) | chr4:11734328-11735419 FORWARD
LENGTH=1092
Length=1092
Score = 303 bits (164), Expect = 2e-81
Identities = 328/405 (81%), Gaps = 19/405 (5%)
Strand=Plus/Plus
Query 1 ATGGAGAAGAACTATAACCCTAATTCTTGGTCGGAGCTTCCTCTAGATCTCTTGAACTTA 60
|||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGAAGAACCATAACCCTAATACATGGTCGGAGCTTCCTCTAGATCTCTTGAACTTA 60
Query 61 GTTTTCGAACGCCTCAGCTTTGCTAATTTCCAACGAGCTAAATCAGTGTGTTCGTCTTGG 120
|||||| ||||||||||||| | ||||||||||||||||||||| || || || || ||
Sbjct 61 GTTTTCAAACGCCTCAGCTTAGTTAATTTCCAACGAGCTAAATCCGTATGCTCCACTCGG 120
Query 121 TACTCTGCTTCCAGACAA-GTCGTGCCAAAAAATCATATC-CATTGGCTGATTCTCTTCC 178
||||||| ||| |||||| | |||||| || ||| ||| | ||| |||||||||||||
Sbjct 121 TACTCTGTTTCGAGACAATG-CGTGCCCGAACGTCAGATCGCTTTG-CTGATTCTCTTCC 178
Query 179 CTCGA-GAAaacaacaacaacaacaaAAATTCATGCACGTTGTTCAATCCCGAGGAAAAA 237
| | | ||| |||||| | | |||| | || | | ||||||||||||||| ||||||
Sbjct 179 C-CAAAGAAGACAACACCGATAACAGTACTTG-TA-A-GTTGTTCAATCCCGACGAAAAA 234
Query 238 GAAAAACTTTACAAAACCCAAGATTTTGATCTTGGTGAAGAATTTGCAAA-ATGTGAATG 296
|| ||||||||||| | |||||| ||| | | || ||||||||||| | ||| ||
Sbjct 235 GACAAACTTTACAAGATGCAAGATCTTGGT---G-TG--GAATTTGCAAAGA-GTGTTTG 287
Query 297 TAGGGCAACCTATGGAAGTTGGCTTCTAATGCAAGATCCTCTGTTTAATCTCTACATTGT 356
||||||||| |||||||||||||| || ||||||||| | || | |||| |||||| |
Sbjct 288 TAGGGCAACTTATGGAAGTTGGCTCCTGATGCAAGATTCAAAGTATCATCTATACATTTT 347
Query 357 GAATCTCTTTAC-CAACGAGAGGATCAATCTACTTCCCGTGGAGT 400
|||| | || || | | ||||||||||||| | ||| |||||||
Sbjct 348 GAATATATTCACTCG-CAAGAGGATCAATCTTCCTCCTGTGGAGT 391
> AT4G22180.1 | Symbols: | F-box family protein with a domain
of unknown function (DUF295) | chr4:11738574-11739782 FORWARD
LENGTH=1209
Length=1209
Score = 279 bits (151), Expect = 3e-74
Identities = 310/383 (81%), Gaps = 26/383 (7%)
Strand=Plus/Plus
Query 14 ATA-ACCCTAATTCTTGGTCGGAGCTTCCTCTAGATCTCTTGAACTT-AGTTTTCGAACG 71
||| |||| ||||| |||||||||||||||||||||||||||| || ||| ||||||||
Sbjct 47 ATACACCC-AATTCCTGGTCGGAGCTTCCTCTAGATCTCTTGA-CTGCAGTGTTCGAACG 104
Query 72 CCTCAGCTTTGCTAATTTCCAACGAGCTAAATCAGTGTGTTCGTCTTGGTACTCTGCTTC 131
|||||||| ||| |||||||||||||||||||| || |||||||||||| |||| | ||
Sbjct 105 CCTCAGCTATGCAAATTTCCAACGAGCTAAATCCGTCTGTTCGTCTTGGCACTCCGGATC 164
Query 132 CAGACAAGTC-GTGCCAAAAAATCATATCCATTGGCTGATTCTCTTCCCTCGAGAAaaca 190
|||||| || || || | | || |||| |||||||||||||||||| | ||| ||
Sbjct 165 GAGACAA-TCCGTTCCCATA---CAGATCCCTTGGCTGATTCTCTTCCC--G-GAATACG 217
Query 191 acaacaacaacaaAAATTCATGCACGTTGTTCAATCCCGAGGAAAAAGAAAAACTTTACA 250
|||||||||| |||||||||||||||||||||||||||||||| || ||||||
Sbjct 218 ACAACAACAA------TTCATGCACGTTGTTCAATCCCGAGGAAAAAGGCCAAGTTTACA 271
Query 251 AAACCCAAGATTTTGATCTTGGTGAAGAATTTGCAAA-ATGTGAATGTAGGGCAACCTAT 309
||| || | |||||||||| |||||| |||| | ||| |||| ||||||||
Sbjct 272 AAATG-AA-A----GATCTTGGTGTTGAATTTTCAAAGA-GTGTTTGTACTGCAACCTAC 324
Query 310 GGAAGTTGGCTTCTAATGCAAGATCCTCTGTTTAATCTCTACATTGTGAATCTCTTTACC 369
||||| ||||| || |||| |||||| |||| ||||||||| ||| ||||||| || |||
Sbjct 325 GGAAGCTGGCTCCTTATGCGAGATCCACTGTATAATCTCTATATTTTGAATCTATTCACC 384
Query 370 AACGAGAGGATCAATCTACTTCC 392
|||||||| | ||||||| |||
Sbjct 385 CACGAGAGGGTAAATCTACCTCC 407
> AT4G22185.1 | Symbols: | pseudogene, similar to P0537A05.16,
similar to protein; blastp match of 28% identity and 3.1e-07
P-value to GP|13366010|dbj|BAB39287.1||AP002971 P0537A05.16
{Oryza sativa (japonica cultivar-group)} | chr4:11740053-11741234
FORWARD LENGTH=1182
Length=1182
Score = 217 bits (117), Expect = 2e-55
Identities = 196/233 (84%), Gaps = 9/233 (4%)
Strand=Plus/Plus
Query 473 GATCTCCTGTGTTTTGGATTGACGAGAAAACCAAAGATTATGTAGTTCTTTGGGGACTTA 532
|||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 533 GATCCCCTGTGTTTTGGATTGACGAGAAAACCAAAGATTATATAGTTTTTTGGGGACTTA 592
Query 533 GAGATTGGTGTGTATTTTATTCCAAGAAAGGAG-ATACCTCTTGGAATCAAATCCCTCAA 591
||||||||||||| ||| | |||||||||| | ||||||| ||||||||||| || |||
Sbjct 593 GAGATTGGTGTGTGGTTTCTGCCAAGAAAGG-GTATACCTCGTGGAATCAAATTCC-CAA 650
Query 592 A-CTCCAGATTGTTCCCGT-ATCCTTTACAAGGATCACAAGCTTTACTTCCTAGGCTACT 649
| || || ||||| | | || | ||||||||||||||||||||||||||| | | |
Sbjct 651 AACTTCAAATTGT-CGTGACATGGTGTACAAGGATCACAAGCTTTACTTCCTAACCAAGT 709
Query 650 -TCCATAGTTTCAAAATCTTCGATCTTTCTGGAGAGATCCCACAACAAATCTT 701
| | |||| |||||||| ||| ||||||| ||||| ||||||||||||||
Sbjct 710 CTGG-TGGTTT-AAAATCTTAGATTTTTCTGGTGAGATTCCACAACAAATCTT 760
> AT4G14165.1 | Symbols: | F-box family protein-related | chr4:8174598-8175715
REVERSE LENGTH=807
Length=807
Score = 141 bits (76), Expect = 1e-32
Identities = 133/160 (83%), Gaps = 6/160 (4%)
Strand=Plus/Plus
Query 558 GAAAGGAGATACCTCTTGGAATCAAATCCCTC-AAACTCCAGATTGTTCCCGTATCCTTT 616
|||||||||||| | ||||||||||||||| | ||||| ||||||||| || || |||
Sbjct 276 GAAAGGAGATACATGTTGGAATCAAATCCC-CAAAACTTCAGATTGTTTCCACATGGTTT 334
Query 617 ACAAGGATCACAAGCTTTACTTCCTAGGCTA--CTTCCATAGTTTCAAAATCTTCGATCT 674
|||||||||||||||||||||||||| | | || ||||||||||||||| ||| |
Sbjct 335 ACAAGGATCACAAGCTTTACTTCCTAAACAAAACTGG--TAGTTTCAAAATCTTTGATTT 392
Query 675 TTCTGGAGAGATCCCACAACAAATCTTTGACTCGAGTGTT 714
|| |||||| || |||||||||| |||||| | |||||||
Sbjct 393 TTGTGGAGATATTCCACAACAAACCTTTGAGTGGAGTGTT 432
Score = 135 bits (73), Expect = 6e-31
Identities = 95/105 (90%), Gaps = 3/105 (3%)
Strand=Plus/Plus
Query 94 CGAGCTAAATCAGTGTGTTCGTCTTGGTACTCTGCTTCCAGACAAGTCGTGCCAAAAAAT 153
||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 57 CGAGCTAAATCCGTGTGTTCCTCTTGGTACTCTGCTTCCAGACAAGTCGTGCCCAAAAA- 115
Query 154 CATATCCATTGGCTGATTCTC-TTCCCTCGAGAAaacaacaacaa 197
|| ||||||||||||||| | ||||| ||||| |||||||||||
Sbjct 116 CACATCCATTGGCTGATT-TGATTCCCCCGAGACAACAACAACAA 159
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53664382605
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5