BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg889972

Length=444
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G22020.1 | Symbols:  | pseudogene, hypothetical protein, sim...   388    2e-107


> AT4G22020.1 | Symbols:  | pseudogene, hypothetical protein, similar 
to uncharacterized glycine-rich protein (GI:7269047) 
{Arabidopsis thaliana} | chr4:11669266-11670456 FORWARD LENGTH=1191
Length=1191

 Score =  388 bits (210),  Expect = 2e-107
 Identities = 286/320 (89%), Gaps = 15/320 (5%)
 Strand=Plus/Plus

Query  128   GAGGTGGAGGAGGTGGTGGAAATGGATCTGGTTACGGAAGTGGTAGTGGTTATGGTTCTG  187
             |||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct  884   GAGGTGGAGGCGGTGGTGGAAATGGATCTGGTTATGGAAGTGGTAGTGGTTACGGTTCTG  943

Query  188   GAACGGGCAAaggtagtggtattggaggcggtggtggtggaggaggtggaggtggtggtg  247
             | | ||| ||||||||||||| ||| |||   ||||||      |||   ||||||||||
Sbjct  944   GTATGGGAAAAGGTAGTGGTAGTGGTGGC---GGTGGT------GGT---GGTGGTGGTG  991

Query  248   gaggtagtggcggaggcagcggaagtggaagtggaagaggagaaggatatggaatgggag  307
             ||||||| || ||||||| |||||| ||||||||||| ||||||||||||||||||||||
Sbjct  992   GAGGTAGCGGTGGAGGCAACGGAAGCGGAAGTGGAAGTGGAGAAGGATATGGAATGGGAG  1051

Query  308   gaggagccggaacaggcaatggaggaggagg---agTGGGTTTTGGAATGGGCATTGGCT  364
             |||||||||||||||||||||||||||||||   |||||||||||||||||||||||| |
Sbjct  1052  GAGGAGCCGGAACAGGCAATGGAGGAGGAGGGGGAGTGGGTTTTGGAATGGGCATTGGAT  1111

Query  365   TTGGTATAGGCATCGGAGGAGGAAGTGGTGGTGGTACCACTTACCAAACCAATCTAACCG  424
             ||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct  1112  TTGGTATTGGCATTGGAGGAGGAAGTGGTGGTGGTACCACTTATCAAACCAATCTTACCG  1171

Query  425   GTGATAAAAGTTCTCCCTAG  444
             ||||||||| ||||||||||
Sbjct  1172  GTGATAAAAATTCTCCCTAG  1191


 Score =  215 bits (116),  Expect = 3e-55
 Identities = 124/128 (97%), Gaps = 0/128 (0%)
 Strand=Plus/Plus

Query  1    ATGGCTACTCATTCAAGGTTTTTATACGTGCTTCTTCTTATTTCATGCATTGTTTTTGCA  60
            ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct  1    ATGGCTACTCATTCAAGGTTTATATACGTGCTTCTTCTTCTTTCATGCATTGTTTTTGCA  60

Query  61   TTGCTTGGGGGAAGTTGTGGAGATAATGTGGAGAATAACAATGACGATGATGATTGTTCT  120
            ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  61   TTGCTTGGGGGTAGTTGTGGAGATAGTGTGGAGAATAACAATGACGATGATGATTGTTCT  120

Query  121  TCCCGGAG  128
            ||||||||
Sbjct  121  TCCCGGAG  128



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21112454580


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5