BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg889976
Length=414
Score E
Sequences producing significant alignments: (Bits) Value
AT4G21980.2 | Symbols: APG8A, ATG8A | Ubiquitin-like superfamil... 688 0.0
AT4G04620.1 | Symbols: ATG8B | Ubiquitin-like superfamily prote... 416 8e-116
AT1G62040.2 | Symbols: ATG8C | Ubiquitin-like superfamily prote... 333 8e-91
> AT4G21980.2 | Symbols: APG8A, ATG8A | Ubiquitin-like superfamily
protein | chr4:11655613-11657034 FORWARD LENGTH=894
Length=894
Score = 688 bits (372), Expect = 0.0
Identities = 401/415 (97%), Gaps = 2/415 (0%)
Strand=Plus/Plus
Query 1 ATGATATTTGCTTGCTTGAAATTTGCAGAGACTAATCGAATCGCCATGGCTAAGAGTTCC 60
||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 256 ATGATCTTTGCTTGCTTGAAATTCGCAGAGACTAATCGAATCGCAATGGCTAAGAGTTCC 315
Query 61 TTCAAGATCTCTAACCCTCTCGAGGCAAGAATGAGTGAATCTTCTCGAATCAGAGAGAAG 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 316 TTCAAGATCTCTAACCCTCTCGAGGCAAGGATGAGTGAATCTTCTCGAATCAGAGAGAAG 375
Query 121 TACCCTGACAGAATTCCCGTGATTGTGGAAAAGGCTGGACAAAGTGATGTTCCTGACATT 180
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 376 TACCCTGACAGAATTCCCGTGATTGTGGAGAAGGCTGGACAAAGTGATGTTCCTGACATT 435
Query 181 GACAAGAAGAAGTATCTTGTACCAGCAGATCTAACAGTTGGACAATTTGTATATGTGGTT 240
|||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||
Sbjct 436 GACAAGAAGAAGTATCTTGTACCAGCTGATCTAACAGTGGGACAATTTGTATACGTGGTT 495
Query 241 CGCAAAAGAATCAAGCTTGGAGCTGAGAAAGCTATCTTTGTCTTTGTTAAGAACACATTG 300
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 496 CGTAAAAGAATCAAGCTTGGAGCTGAGAAAGCTATTTTTGTCTTTGTTAAGAACACATTG 555
Query 301 CCTCCAACTGCTGCATTGATGTCTGCAATCTATGAAGAACACAAAGATGAAGATGGGTTC 360
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 556 CCTCCAACTGCTGCATTGATGTCTGCGATCTATGAAGAACACAAAGATGAGGATGGGTTC 615
Query 361 CTCTACATGACTTACAGTGGAGAGAACACTTTTGGAT-TCTTTACCGTTGCTTGA 414
||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 616 CTCTACATGACTTACAGTGGAGAGAACACTTTTGGATCTCTT-ACCGTTGCTTGA 669
> AT4G04620.1 | Symbols: ATG8B | Ubiquitin-like superfamily protein
| chr4:2328496-2330200 REVERSE LENGTH=725
Length=725
Score = 416 bits (225), Expect = 8e-116
Identities = 323/371 (87%), Gaps = 4/371 (1%)
Strand=Plus/Plus
Query 27 AGAGACTAATCGAATCGCCATGGCTAAGAGTTCCTTCAAGATCTCTAACCCTCTCGAGGC 86
||| ||||| |||||| ||||| |||| ||||||||| | ||||| ||||| |||
Sbjct 171 AGATACTAACCGAATCATCATGGAGAAGAACTCCTTCAAGCTTTCTAATCCTCTGGAGAT 230
Query 87 AAGAATGAG-TGAATCTTCTCGAATCAGAGAGAAGTACCCTGACAGAATTCCCGTGATTG 145
|||||| | ||| ||| |||| ||||||| ||| |||||||| ||| ||||||||||||
Sbjct 231 GAGAATG-GCTGAGTCTACTCGTATCAGAGCGAAATACCCTGAAAGAGTTCCCGTGATTG 289
Query 146 TGGAAAAGGCTGGACAAAGTGATGTTCCTGACATTGACAAGAAGAAGTATCTTGTACCAG 205
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 290 TGGAAAAAGCTGGACAGAGTGATGTTCCTGACATTGACAAGAAGAAGTATCTTGTACCAG 349
Query 206 CAGATCTAAC-AGTTGGACAATTTGTATATGTGGTTCGCAAAAGAATCAAGCTTGGAGCT 264
| |||||||| | |||| |||||||| || || || | |||||||||||||||||||||
Sbjct 350 CTGATCTAACCA-TTGGCCAATTTGTGTACGTTGTGAGGAAAAGAATCAAGCTTGGAGCT 408
Query 265 GAGAAAGCTATCTTTGTCTTTGTTAAGAACACATTGCCTCCAACTGCTGCATTGATGTCT 324
|| ||||| |||||||||||||| ||||||||||| || |||||||| ||||||||||||
Sbjct 409 GAAAAAGCCATCTTTGTCTTTGTCAAGAACACATTACCACCAACTGCGGCATTGATGTCT 468
Query 325 GCAATCTATGAAGAACACAAAGATGAAGATGGGTTCCTCTACATGACTTACAGTGGAGAG 384
|||||||| |||||||||||||| ||||| ||||| ||||||||||| ||||||||||||
Sbjct 469 GCAATCTACGAAGAACACAAAGACGAAGACGGGTTTCTCTACATGACATACAGTGGAGAG 528
Query 385 AACACTTTTGG 395
||||| |||||
Sbjct 529 AACACATTTGG 539
> AT1G62040.2 | Symbols: ATG8C | Ubiquitin-like superfamily protein
| chr1:22932760-22934549 FORWARD LENGTH=720
Length=720
Score = 333 bits (180), Expect = 8e-91
Identities = 307/366 (84%), Gaps = 18/366 (5%)
Strand=Plus/Plus
Query 39 AATCGCCATGGCTAAGAGTTCCTTCAAGATCT-CTA-ACCCTCTCGAG-GCAAGA-ATGA 94
||||||||||||||| || || |||||| | | | |||| || ||| | ||| | |
Sbjct 58 AATCGCCATGGCTAATAGCTCTTTCAAG-T-TGGAACACCCACTAGAGAG-GAGACA-AA 113
Query 95 GTGAATCTTCTCGAATCAGAGAGAAGTACCCTGACAGAATTCCCGTGATTGTGGAAAAG- 153
|||||||||||| ||||| |||||||| || ||||||||||| ||||| || | | ||
Sbjct 114 TTGAATCTTCTCGCATCAGGGAGAAGTATCCAGACAGAATTCCAGTGATCGTAG-AGAGA 172
Query 154 GCTGGACA-AAGTGATGTTCCTGACATTGACAAGAAGAAGTATCTTGTACCAGCAGATCT 212
||| || | |||||||||||| | || |||||||||||||| ||||| ||||| |||||
Sbjct 173 GCT-GAAAGAAGTGATGTTCCCAATATCGACAAGAAGAAGTACCTTGTTCCAGCTGATCT 231
Query 213 AACAGTTGGACAATTTGTATATGTGGTTCGCAAAAGAATCAAGCTTG-GAGCTGAGAAA- 270
||| ||||| |||||||| ||||| || || ||||||||||||| || | || || |||
Sbjct 232 AACTGTTGGGCAATTTGTGTATGTTGTCCGTAAAAGAATCAAGC-TGAGTGCCGA-AAAG 289
Query 271 GCTATCTTTGTCTTTGTTAAGAACACATTGCCTCCAACTGCTGCATTGATGTCTGCAATC 330
|||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 290 GCTATCTTCGTCTTTGTGAAGAACACATTGCCTCCAACTGCTGCAATGATGTCTGCAATC 349
Query 331 TATGAAGA-ACACAAAGATGAAGATGGGTTCCTCTACATGACTTACAGTGGAGAGAACAC 389
||||| || | ||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 350 TATGATGAGA-ACAAAGACGAAGATGGGTTTCTCTACATGACTTACAGTGGAGAGAACAC 408
Query 390 TTTTGG 395
|||||
Sbjct 409 CTTTGG 414
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19604422110
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5