BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg889984 Length=1554 Score E Sequences producing significant alignments: (Bits) Value AT4G21900.1 | Symbols: PRORP3 | proteinaceous RNase P 3 | chr4:... 2399 0.0 AT2G16650.1 | Symbols: PRORP2 | proteinaceous RNase P 2 | chr2:... 1471 0.0 AT2G02890.1 | Symbols: | F-box family protein | chr2:843913-84... 126 6e-28 > AT4G21900.1 | Symbols: PRORP3 | proteinaceous RNase P 3 | chr4:11616346-11619350 REVERSE LENGTH=1953 Length=1953 Score = 2399 bits (1299), Expect = 0.0 Identities = 1473/1558 (95%), Gaps = 8/1558 (1%) Strand=Plus/Plus Query 1 ATGGCCGGTACTGATCACCGCCGCTCTCGCCACCATGACGAAAGCCCTTCAAAA-CCTAA 59 ||||| ||||||||| ||||||||||||||||| | ||||||||||| | |||| || || Sbjct 179 ATGGCTGGTACTGATAACCGCCGCTCTCGCCACGACGACGAAAGCCC-TAAAAATCCCAA 237 Query 60 CAAGAAGCAGAAGGGAAGCCGCAATCCAGAAAAGAGTCTCCTTATCAATCTTCATTCTTG 119 ||||||| |||| |||| ||| ||||||||||||||||||||||||||||||||||| || Sbjct 238 CAAGAAGAAGAAAGGAAACCGTAATCCAGAAAAGAGTCTCCTTATCAATCTTCATTCATG 297 Query 120 TTCCAAGAGAAAGGACCTCTCAGCTGCGTTGGCTCTTTATGATGCAGCTATCACTTCCAG 179 ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| Sbjct 298 TTCCAAGAGAAAGGATCTCTCAGCTGCATTGGCTCTTTATGATGCAGCTATCACTTCCAG 357 Query 180 TGACATCCGCCTCAACCAGCAACACTTCCAATCCCTTCTTTATCTCTGCTCCGCGTTCAT 239 |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 358 TGACATTCGCCTCAACCAGCAACACTTCCAATCCCTTCTTTACCTCTGCTCCGCGTTCAT 417 Query 240 TAGTGACCCATCTCTTCAAACAC-TTGCCATTGACCGGGGTTTTCAAATTTTTGACCGTA 298 ||||||||||||||||||||| | ||||||||||||| || ||||||||||||||||||| Sbjct 418 TAGTGACCCATCTCTTCAAAC-CGTTGCCATTGACCGTGGCTTTCAAATTTTTGACCGTA 476 Query 299 TGGTTAGTTCAGGGATAAGTCCCAATGAATCATCCGTCACTGCAGTGGCACGACTAGCTG 358 |||||||||| ||||||||||| ||||||||||| ||||||||||| ||||||||||||| Sbjct 477 TGGTTAGTTCTGGGATAAGTCCTAATGAATCATCTGTCACTGCAGTTGCACGACTAGCTG 536 Query 359 CTGCCAAGGGTGACGGTGATTATGCTTTCAAGCTTGTCAAAGATATTGTCG-TGGTTGGC 417 ||||||||||||| || || ||||||||||||||||| ||||| |||| | | ||||| Sbjct 537 CTGCCAAGGGTGATGGAGACTATGCTTTCAAGCTTGTTAAAGACCTTGTTGCT-GTTGGT 595 Query 418 GGTGTATCGGTCCCTCGTCTGAGAACTTATGCTCCGGCTTTGCTCTGTTTCTGTGAGAGT 477 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | Sbjct 596 GGTGTATCGGTCCCTCGTCTGAGAACTTATGCTCCGGCTTTGCTCTGTTTCTGTGATACT 655 Query 478 TTGGAGGCTGAGAAGGGTTATGAAGTGGAAGAGCACATGGATGCTTCAGGTATTATGTTG 537 ||||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||| Sbjct 656 TTGGAGGCTGAAAAGGGTTATGAAGTGGAAGATCACATGGATGCTTCAGGTATTGTGTTG 715 Query 538 GAGGAGGCAGAGATCTCTGCTTTGCTGAAGGTAAGCGCTGCCACGGGCCGAGAAAACAAG 597 ||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||| Sbjct 716 GAGGAGGCAGAGATCTCGGCTTTGCTAAAGGTAAGCGCTGCCACAGGCCGAGAAAACAAG 775 Query 598 GTTTATAGATATTTGCATAAATTAAGAGAATGTGTTGGCTGCGTTAGTGAAGAAACTTCA 657 |||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||| Sbjct 776 GTTTATAGATATCTGCAGAAGTTAAGAGAATGTGTTGGCTGCGTTAGTGAAGAAACTTCA 835 Query 658 AAAACAATCGAGGAATGGTTTTATGGAGTGAAAGCTAGCGAAGTTAGTGATAA-GGCGAT 716 ||| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct 836 AAAGCAATCGAGGAATGGTTTTATGGAGTGAAAGCTAGCGAAGTTAGTGATAATGG-GAT 894 Query 717 TGGTTCTGATATTGAGCTGCTTAGAGCAGCTGTTTTGAAGAATGGGGGTGGGTGGCACGG 776 ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || Sbjct 895 TGGTTCTGATATTGAGCTGCTTAGAGCAGCTGTTTTGAAAAATGGGGGTGGGTGGCATGG 954 Query 777 TCTTGGTTGGGTTGGGGAAGGCAAATGGATTGTGAAGAAAGGTAATGTTAGCCCAGCCGG 836 |||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||| Sbjct 955 TCTTGGGTGGGTTGGAGAAGGCAAATGGATTGTGAAGAAAGGTAATGTTAGCTCAGCCGG 1014 Query 837 AAAATGTTTGAGCTGTGGTGAGCATTTGGCTTGTGTTGATACCAATGAGGTAGAGACTGA 896 |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1015 GAAATGTTTGAGCTGTGATGAGCATTTGGCTTGTGTTGATACCAATGAGGTAGAGACTGA 1074 Query 897 AAATTTTGTGAATTCTTTGGTGGCTTTGGCTATGGAGAGGAAGGCGAAGATGAATTCATG 956 | |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| Sbjct 1075 AGATTTTGTGAATTCTTTGGTGACTTTGGCTATGGAGAGGAAGGCAAAGATGAATTCATG 1134 Query 957 CGAGCCTATGGCGGATTTCAGCGAGTTTCAGGAGTGGCTTGAAAAGCATGGAGACTACGA 1016 ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| Sbjct 1135 CGAGCCTATGGCGGATTTCAGTGAGTTTCAGGAGTGGCTTGAAAAGCATGGAGATTACGA 1194 Query 1017 AGCTATACTAGATGGAGCAAATATTGGGCTTTACCAACAAAATTTTACAGATGGTGGCTT 1076 |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| || Sbjct 1195 AGCTATACTAGATGGAGCAAATATTGGGCTCTACCAACAAAATTTTGCAGATGGTGGTTT 1254 Query 1077 CAGTCTACCACAGCTTGAAGCTGTAGTGAAGGAACTTTACAATAAAAGTGGTAACAAAAA 1136 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1255 CAGTCTACCACAGCTTGAAGCTGTAGTGAAGGAACTTTACAATAAAAGTGGTAGCAAAAA 1314 Query 1137 ACAGCCGCTAATTCTCTTGCACAAGAAACGGGTCAATGCACTTTTAGGAAACCCGAATCA 1196 ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| Sbjct 1315 ACAGCCGCTAATTCTCTTGCACAAGAAACGGGTCAATGCGCTTTTAGAAAACCCGAATCA 1374 Query 1197 CCGGAATCTGGTGGAGGAATGGATTGATAACAATGTCCTTTACGCGACCCCACCAGGTTC 1256 ||||||||| ||||| ||||||||| ||||||||||||| || ||||| ||||||||||| Sbjct 1375 CCGGAATCTTGTGGAAGAATGGATTAATAACAATGTCCTGTATGCGACTCCACCAGGTTC 1434 Query 1257 CAACGATGATTGGTATTGGCTGTATGCTGCTGCTAAACTCAAGTGTTTGCTTGTGACTAA 1316 ||| ||||||||||||||||| || ||||||||||||||||||||||| ||||||||||| Sbjct 1435 CAATGATGATTGGTATTGGCTCTACGCTGCTGCTAAACTCAAGTGTTTACTTGTGACTAA 1494 Query 1317 TGATGAGATGAGAGATCACATTTTTGAACTATTAAGTAATAGTTTTTTCCAAAAATGGAA 1376 ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| Sbjct 1495 TGATGAGATGAGAGATCACATTTTTGAACTATTAAGTAACAGTTTCTTCCAAAAATGGAA 1554 Query 1377 AGAAAGACATCAAGTGCGGTTTACCTTTGTGAAAGGCTGTCTCAAGCTTGAAATGCCACC 1436 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1555 AGAAAGACATCAAGTTCGGTTTACCTTTGTGAAAGGCTGTCTCAAGCTTGAAATGCCACC 1614 Query 1437 TCCTTTTTCAGTTGTGATCCAGGAATCAGAGAAAGGATCATGGCACATTCCAATCACGAG 1496 ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| Sbjct 1615 TCCTTTTTCAGTTGTGATCCAGGAATCGGAGAAAGGATCATGGCACGTTCCAATCACGAG 1674 Query 1497 TCAAGACAATGAGGAATCTTCAAGAAGTTGGATGTGCATTACAAGGCAGAGTTTATAG 1554 ||||||||| |||||||||| |||||||||||||||||||||||||||||||| |||| Sbjct 1675 TCAAGACAAGGAGGAATCTTTAAGAAGTTGGATGTGCATTACAAGGCAGAGTTCATAG 1732 > AT2G16650.1 | Symbols: PRORP2 | proteinaceous RNase P 2 | chr2:7215819-7218395 REVERSE LENGTH=1871 Length=1871 Score = 1471 bits (796), Expect = 0.0 Identities = 1314/1561 (84%), Gaps = 48/1561 (3%) Strand=Plus/Plus Query 1 ATGGCCGGTACTGATCACCGCCGCTCTCGCCACCATGACGAAAGCCCTTCAAAACCTAAC 60 ||||| | | ||||||| | ||| ||||||| || ||||| ||| |||||| ||| ||| Sbjct 167 ATGGCTGCTTCTGATCAACACCGGTCTCGCCGTCACGACGAGAGCTCTTCAAGACCCAAC 226 Query 61 AAGAAGCAGAAGGGAAGCCGCAATCCAGAAA-AGAGTCTCCT-TATCAATCTTC-ATTCT 117 |||||| |||||| |||| | || ||||||| | | |||||| | |||||| || |||| Sbjct 227 AAGAAGAAGAAGGTAAGCAGAAACCCAGAAACA-AATCTCCTCT-TCAATC-TCAATTCA 283 Query 118 TGTTCCAAGAGAAAGGACCTCTCAGCTGCGTTGGCTCTTTATGATGCAGCTATCACTTCC 177 || |||||| ||||||||||||||||| || || |||||||||||||| ||||||||| Sbjct 284 TGCTCCAAGTCCAAGGACCTCTCAGCTGCATTAGCACTTTATGATGCAGCCATCACTTCC 343 Query 178 AGTGACA-TCCGCCTCAACCAGCAACACTTCCAATCCCTTCTTTATCTCTGCTCCGCGTT 236 ||||| | | || |||| ||||||||| || ||| | ||||| || || ||||| || || Sbjct 344 AGTGA-AGTACGTCTCAGCCAGCAACATTTTCAAACGCTTCTGTACCTATGCTCAGC-TT 401 Query 237 -CATTAGTGACCCATCTCTTCAA-ACACTTGCCATTGACCGGGGTTTTC-AAATTTTTGA 293 ||||| |||| |||||||||| || |||||||||||||| || |||| | |||||||| Sbjct 402 CCATTACTGACATATCTCTTCAATAC-CTTGCCATTGACCGTGG-TTTCGAGATTTTTGA 459 Query 294 CCGTATGGTTAGTTCAGGGATAAGTCCCAATGAATCATCCGTCACTGCAGTGGC-ACGAC 352 |||||||||||||| ||||||||||| ||||| |||| || ||| ||||||| | ||| Sbjct 460 TCGTATGGTTAGTTCGGGGATAAGTCCTAATGAGGCATCTGTTACTTCAGTGGCTA-GAC 518 Query 353 TAGCTGCTGCCAAGGGTGACGGTGATTATGCTTTCAAGCTTGTCAAAGA-TATTG--TCG 409 | |||||||| || ||| | |||||||||||||||||| |||| || || | ||| || Sbjct 519 TGGCTGCTGCTAAAGGTAATGGTGATTATGCTTTCAAGGTTGTTAAGGAGT-TTGTTTC- 576 Query 410 TGGTTGGCGGTGTATCGGTCCCTCGTCTGAGAACTTATGCTCCGGCTTTGCTCTGTTTCT 469 | ||||| ||||| ||| | ||||||||||| || ||||| ||||||||||||||||||| Sbjct 577 T-GTTGGAGGTGTGTCGATTCCTCGTCTGAGGACATATGCGCCGGCTTTGCTCTGTTTCT 635 Query 470 GTGAG-AGTTTGGAGGCTGAGAAGGGTTATGAAGTGGAAGAGCACATGGATGCTTCAGGT 528 | ||| || ||||||||||| ||||||||||| || |||||||||||||| ||| ||||| Sbjct 636 GCGAGAAG-TTGGAGGCTGAAAAGGGTTATGAGGTAGAAGAGCACATGGAAGCTGCAGGT 694 Query 529 ATTATGTTGGAGGAGGCAGAGATCTCTGCTTTGCTGAAGGTAAGCGCTGCCACGGGCCGA 588 ||| ||||||||||||||||| || |||||| |||||||||| ||||||||||| ||| Sbjct 695 ATTGCATTGGAGGAGGCAGAGATATCGGCTTTGTTGAAGGTAAGTGCTGCCACGGGTCGA 754 Query 589 GAAAACAAGGTTTATAGATATTTGCATAAATTAAGAGAATGTGTTGGCTGCGTTAGTGAA 648 ||||||||||||||||||||||| ||||| || || |||| ||||||||||||||||||| Sbjct 755 GAAAACAAGGTTTATAGATATTTACATAAGTTGAGGGAATATGTTGGCTGCGTTAGTGAA 814 Query 649 GAAACTTCAAAAACAATCGAGGAATGGTTTTATGGAGTGAAAGCTAGCGAAGTTAGTGAT 708 ||||||| |||| || ||||||||||| | ||||| |||||| | || ||| ||||| Sbjct 815 GAAACTTTGAAAATTATTGAGGAATGGTTCTGTGGAGAAAAAGCTGGTGAGGTTGGTGAT 874 Query 709 AA-GGCGATTGGTTCTGATATTGAGCTGCTTAGAGCAGCTGTTTTGAAGAATGGGGGTGG 767 || || |||||||||||| ||| | ||||||||| |||||||||||| ||||| ||||| Sbjct 875 AATGG-AATTGGTTCTGATGTTGGGATGCTTAGAGAAGCTGTTTTGAATAATGGAGGTGG 933 Query 768 GTGGCACGGTCTTGGTTGGGTTGGGGAAGGCAAATGGATTGTGAAGAAAGGTAATGTTAG 827 ||||||||| | ||| ||||||||||| || ||||||| ||| ||||||||||||||||| Sbjct 934 GTGGCACGGGCATGGGTGGGTTGGGGAGGGTAAATGGACTGTAAAGAAAGGTAATGTTAG 993 Query 828 CCCAGCCGGAAAATGTTTGAGCTGTGGTGAGCATTTGGCTTGTGTTGATACCAATGAGGT 887 | || | |||| |||||||||||| ||||||| || |||||||| |||||||||||||| Sbjct 994 CTCAACAGGAAGATGTTTGAGCTGCAGTGAGCAGTTAGCTTGTGTAGATACCAATGAGGT 1053 Query 888 AGAGACTGAAAATTTTGTGAATTCTTTGGTGGCTTTGGCTATGGAGAGGAAGGCGAAGAT 947 ||| || | || |||||| ||||||||||||||||||||||||| |||||| | ||||| Sbjct 1054 AGAAACACAGAAGTTTGTGGATTCTTTGGTGGCTTTGGCTATGGATAGGAAGACAAAGAT 1113 Query 948 GAATTCATGCGAG-CCTATGGCGGAT-TTCAGCGAGTTTCAGGAGTGGCTTGA-AAAGCA 1004 ||||||||| ||| | || | || | ||||||||||||||||| |||||||| ||| || Sbjct 1114 GAATTCATGTGAGACAAAT-GTGG-TCTTCAGCGAGTTTCAGGACTGGCTTGAGAAA-CA 1170 Query 1005 TGGAGACTACGAAGCTATACTAGATGGAGCAAATATTGGGCTTTACCAACAAAATTTTAC 1064 |||||| |||||||||||| |||||||||||||||||||||| ||||||||||||||| Sbjct 1171 TGGAGATTACGAAGCTATAGTAGATGGAGCAAATATTGGGCTCTACCAACAAAATTTTGT 1230 Query 1065 AGATGGTGGCTTCAGTCTACCACAGCTTGAAGCTGTAG-TGAAGGAACTTTACAATAAAA 1123 |||||| | |||||||| ||||||||||| |||| | |||||||||||||| | ||| Sbjct 1231 AGATGGCAGTTTCAGTCTTTCACAGCTTGAATCTGT-GATGAAGGAACTTTACCGTGAAA 1289 Query 1124 GTGGTAACAAAAAACAGCCGCTAATTCTCTTGCACAAGAAACGGGTCAATG-CACTTTTA 1182 ||||||| || ||| ||| |||||||| |||||||||| ||||||||| | | |||||| Sbjct 1290 GTGGTAATAACAAATGGCCCCTAATTCTATTGCACAAGAGACGGGTCAA-GACGCTTTTA 1348 Query 1183 GGAAACCCGAA-TCACCGGAATCTGGTGGAGGAATGGATTGA-TAACAATGTCCTTTACG 1240 | |||||| || ||||||||||||||| || ||||||||| | |||| |||||| || | Sbjct 1349 GAAAACCC-AACTCACCGGAATCTGGTTGAAGAATGGATT-AGTAACGGTGTCCTGTATG 1406 Query 1241 CGACCCCACCAGGTTCCAACGATGATTGGTATTGGCTGTATGCTGCTGCTAAACTCAAGT 1300 | || |||||||||||||| |||||||||||||||||||||||||||||||| ||||||| Sbjct 1407 CAACTCCACCAGGTTCCAATGATGATTGGTATTGGCTGTATGCTGCTGCTAAGCTCAAGT 1466 Query 1301 GTTTGCTTGTGACTAATGATGAGATGAGAGATCACATTTTTGAACTATTAAGTAATAGTT 1360 ||||||||||||| ||||||||||||||||| |||||||||||||| ||| | | || || Sbjct 1467 GTTTGCTTGTGACAAATGATGAGATGAGAGACCACATTTTTGAACTCTTAGGGAGTACTT 1526 Query 1361 TTTTCCAAAAATGGAAAGAAAGACATCAAGTGCGGTTTACCTTTGTGAAAGGCTGTC-TC 1419 |||||||||| ||||||||||||||||| || |||| ||| ||||||||||| | | | Sbjct 1527 TTTTCCAAAAGTGGAAAGAAAGACATCAGGTCCGGTATACTTTTGTGAAAGG-TAACCTG 1585 Query 1420 AAGCTTGAAATGCCACCTCCTTTTTCAGTTGTGATCCAGGAATCAGAGAAAGGATCATGG 1479 |||||||||||||| |||||||||| ||||| || ||||||||||||||||| |||||| Sbjct 1586 AAGCTTGAAATGCCGTCTCCTTTTTCGGTTGTCATTCAGGAATCAGAGAAAGGGTCATGG 1645 Query 1480 CACATTCCAA-TCACGA-GTC-AAGACAATGAGGAATCTTCAAGAAGTTGGATGTGCATT 1536 || |||| || | | | | || ||||||| || |||||||||| ||||||||| ||| Sbjct 1646 CAT-TTCCCGGTCTC-ATG-CGAAAACAATGAAGAGTCTTCAAGAACTTGGATGTGTATT 1702 Query 1537 A 1537 | Sbjct 1703 A 1703 > AT2G02890.1 | Symbols: | F-box family protein | chr2:843913-846616 REVERSE LENGTH=1596 Length=1596 Score = 126 bits (68), Expect = 6e-28 Identities = 94/106 (89%), Gaps = 4/106 (4%) Strand=Plus/Plus Query 443 CTTATGCTCCGGCTTTGCTCTGTTTCTGTGAGAGTTT-GGAGGC-TGAGAAGGGTTATGA 500 ||||||||||||||||||||||||||||||||| ||| ||| || | | |||| |||||| Sbjct 281 CTTATGCTCCGGCTTTGCTCTGTTTCTGTGAGACTTTTGGAAGCCTAA-AAGG-TTATGA 338 Query 501 AGTGGAAGAGCACATGGATGCTTCAGGTATTATGTTGGAGGAGGCA 546 ||||||| | |||||| ||||||||| || |||||||||||||||| Sbjct 339 AGTGGAAAATCACATGAATGCTTCAGTTACTATGTTGGAGGAGGCA 384 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 76706432760 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5