BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg889984
Length=1554
Score E
Sequences producing significant alignments: (Bits) Value
AT4G21900.1 | Symbols: PRORP3 | proteinaceous RNase P 3 | chr4:... 2399 0.0
AT2G16650.1 | Symbols: PRORP2 | proteinaceous RNase P 2 | chr2:... 1471 0.0
AT2G02890.1 | Symbols: | F-box family protein | chr2:843913-84... 126 6e-28
> AT4G21900.1 | Symbols: PRORP3 | proteinaceous RNase P 3 | chr4:11616346-11619350
REVERSE LENGTH=1953
Length=1953
Score = 2399 bits (1299), Expect = 0.0
Identities = 1473/1558 (95%), Gaps = 8/1558 (1%)
Strand=Plus/Plus
Query 1 ATGGCCGGTACTGATCACCGCCGCTCTCGCCACCATGACGAAAGCCCTTCAAAA-CCTAA 59
||||| ||||||||| ||||||||||||||||| | ||||||||||| | |||| || ||
Sbjct 179 ATGGCTGGTACTGATAACCGCCGCTCTCGCCACGACGACGAAAGCCC-TAAAAATCCCAA 237
Query 60 CAAGAAGCAGAAGGGAAGCCGCAATCCAGAAAAGAGTCTCCTTATCAATCTTCATTCTTG 119
||||||| |||| |||| ||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 238 CAAGAAGAAGAAAGGAAACCGTAATCCAGAAAAGAGTCTCCTTATCAATCTTCATTCATG 297
Query 120 TTCCAAGAGAAAGGACCTCTCAGCTGCGTTGGCTCTTTATGATGCAGCTATCACTTCCAG 179
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 298 TTCCAAGAGAAAGGATCTCTCAGCTGCATTGGCTCTTTATGATGCAGCTATCACTTCCAG 357
Query 180 TGACATCCGCCTCAACCAGCAACACTTCCAATCCCTTCTTTATCTCTGCTCCGCGTTCAT 239
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 358 TGACATTCGCCTCAACCAGCAACACTTCCAATCCCTTCTTTACCTCTGCTCCGCGTTCAT 417
Query 240 TAGTGACCCATCTCTTCAAACAC-TTGCCATTGACCGGGGTTTTCAAATTTTTGACCGTA 298
||||||||||||||||||||| | ||||||||||||| || |||||||||||||||||||
Sbjct 418 TAGTGACCCATCTCTTCAAAC-CGTTGCCATTGACCGTGGCTTTCAAATTTTTGACCGTA 476
Query 299 TGGTTAGTTCAGGGATAAGTCCCAATGAATCATCCGTCACTGCAGTGGCACGACTAGCTG 358
|||||||||| ||||||||||| ||||||||||| ||||||||||| |||||||||||||
Sbjct 477 TGGTTAGTTCTGGGATAAGTCCTAATGAATCATCTGTCACTGCAGTTGCACGACTAGCTG 536
Query 359 CTGCCAAGGGTGACGGTGATTATGCTTTCAAGCTTGTCAAAGATATTGTCG-TGGTTGGC 417
||||||||||||| || || ||||||||||||||||| ||||| |||| | | |||||
Sbjct 537 CTGCCAAGGGTGATGGAGACTATGCTTTCAAGCTTGTTAAAGACCTTGTTGCT-GTTGGT 595
Query 418 GGTGTATCGGTCCCTCGTCTGAGAACTTATGCTCCGGCTTTGCTCTGTTTCTGTGAGAGT 477
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 596 GGTGTATCGGTCCCTCGTCTGAGAACTTATGCTCCGGCTTTGCTCTGTTTCTGTGATACT 655
Query 478 TTGGAGGCTGAGAAGGGTTATGAAGTGGAAGAGCACATGGATGCTTCAGGTATTATGTTG 537
||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 656 TTGGAGGCTGAAAAGGGTTATGAAGTGGAAGATCACATGGATGCTTCAGGTATTGTGTTG 715
Query 538 GAGGAGGCAGAGATCTCTGCTTTGCTGAAGGTAAGCGCTGCCACGGGCCGAGAAAACAAG 597
||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||
Sbjct 716 GAGGAGGCAGAGATCTCGGCTTTGCTAAAGGTAAGCGCTGCCACAGGCCGAGAAAACAAG 775
Query 598 GTTTATAGATATTTGCATAAATTAAGAGAATGTGTTGGCTGCGTTAGTGAAGAAACTTCA 657
|||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 776 GTTTATAGATATCTGCAGAAGTTAAGAGAATGTGTTGGCTGCGTTAGTGAAGAAACTTCA 835
Query 658 AAAACAATCGAGGAATGGTTTTATGGAGTGAAAGCTAGCGAAGTTAGTGATAA-GGCGAT 716
||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 836 AAAGCAATCGAGGAATGGTTTTATGGAGTGAAAGCTAGCGAAGTTAGTGATAATGG-GAT 894
Query 717 TGGTTCTGATATTGAGCTGCTTAGAGCAGCTGTTTTGAAGAATGGGGGTGGGTGGCACGG 776
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 895 TGGTTCTGATATTGAGCTGCTTAGAGCAGCTGTTTTGAAAAATGGGGGTGGGTGGCATGG 954
Query 777 TCTTGGTTGGGTTGGGGAAGGCAAATGGATTGTGAAGAAAGGTAATGTTAGCCCAGCCGG 836
|||||| |||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 955 TCTTGGGTGGGTTGGAGAAGGCAAATGGATTGTGAAGAAAGGTAATGTTAGCTCAGCCGG 1014
Query 837 AAAATGTTTGAGCTGTGGTGAGCATTTGGCTTGTGTTGATACCAATGAGGTAGAGACTGA 896
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1015 GAAATGTTTGAGCTGTGATGAGCATTTGGCTTGTGTTGATACCAATGAGGTAGAGACTGA 1074
Query 897 AAATTTTGTGAATTCTTTGGTGGCTTTGGCTATGGAGAGGAAGGCGAAGATGAATTCATG 956
| |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 1075 AGATTTTGTGAATTCTTTGGTGACTTTGGCTATGGAGAGGAAGGCAAAGATGAATTCATG 1134
Query 957 CGAGCCTATGGCGGATTTCAGCGAGTTTCAGGAGTGGCTTGAAAAGCATGGAGACTACGA 1016
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1135 CGAGCCTATGGCGGATTTCAGTGAGTTTCAGGAGTGGCTTGAAAAGCATGGAGATTACGA 1194
Query 1017 AGCTATACTAGATGGAGCAAATATTGGGCTTTACCAACAAAATTTTACAGATGGTGGCTT 1076
|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||
Sbjct 1195 AGCTATACTAGATGGAGCAAATATTGGGCTCTACCAACAAAATTTTGCAGATGGTGGTTT 1254
Query 1077 CAGTCTACCACAGCTTGAAGCTGTAGTGAAGGAACTTTACAATAAAAGTGGTAACAAAAA 1136
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1255 CAGTCTACCACAGCTTGAAGCTGTAGTGAAGGAACTTTACAATAAAAGTGGTAGCAAAAA 1314
Query 1137 ACAGCCGCTAATTCTCTTGCACAAGAAACGGGTCAATGCACTTTTAGGAAACCCGAATCA 1196
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 1315 ACAGCCGCTAATTCTCTTGCACAAGAAACGGGTCAATGCGCTTTTAGAAAACCCGAATCA 1374
Query 1197 CCGGAATCTGGTGGAGGAATGGATTGATAACAATGTCCTTTACGCGACCCCACCAGGTTC 1256
||||||||| ||||| ||||||||| ||||||||||||| || ||||| |||||||||||
Sbjct 1375 CCGGAATCTTGTGGAAGAATGGATTAATAACAATGTCCTGTATGCGACTCCACCAGGTTC 1434
Query 1257 CAACGATGATTGGTATTGGCTGTATGCTGCTGCTAAACTCAAGTGTTTGCTTGTGACTAA 1316
||| ||||||||||||||||| || ||||||||||||||||||||||| |||||||||||
Sbjct 1435 CAATGATGATTGGTATTGGCTCTACGCTGCTGCTAAACTCAAGTGTTTACTTGTGACTAA 1494
Query 1317 TGATGAGATGAGAGATCACATTTTTGAACTATTAAGTAATAGTTTTTTCCAAAAATGGAA 1376
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1495 TGATGAGATGAGAGATCACATTTTTGAACTATTAAGTAACAGTTTCTTCCAAAAATGGAA 1554
Query 1377 AGAAAGACATCAAGTGCGGTTTACCTTTGTGAAAGGCTGTCTCAAGCTTGAAATGCCACC 1436
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 AGAAAGACATCAAGTTCGGTTTACCTTTGTGAAAGGCTGTCTCAAGCTTGAAATGCCACC 1614
Query 1437 TCCTTTTTCAGTTGTGATCCAGGAATCAGAGAAAGGATCATGGCACATTCCAATCACGAG 1496
||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 1615 TCCTTTTTCAGTTGTGATCCAGGAATCGGAGAAAGGATCATGGCACGTTCCAATCACGAG 1674
Query 1497 TCAAGACAATGAGGAATCTTCAAGAAGTTGGATGTGCATTACAAGGCAGAGTTTATAG 1554
||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1675 TCAAGACAAGGAGGAATCTTTAAGAAGTTGGATGTGCATTACAAGGCAGAGTTCATAG 1732
> AT2G16650.1 | Symbols: PRORP2 | proteinaceous RNase P 2 | chr2:7215819-7218395
REVERSE LENGTH=1871
Length=1871
Score = 1471 bits (796), Expect = 0.0
Identities = 1314/1561 (84%), Gaps = 48/1561 (3%)
Strand=Plus/Plus
Query 1 ATGGCCGGTACTGATCACCGCCGCTCTCGCCACCATGACGAAAGCCCTTCAAAACCTAAC 60
||||| | | ||||||| | ||| ||||||| || ||||| ||| |||||| ||| |||
Sbjct 167 ATGGCTGCTTCTGATCAACACCGGTCTCGCCGTCACGACGAGAGCTCTTCAAGACCCAAC 226
Query 61 AAGAAGCAGAAGGGAAGCCGCAATCCAGAAA-AGAGTCTCCT-TATCAATCTTC-ATTCT 117
|||||| |||||| |||| | || ||||||| | | |||||| | |||||| || ||||
Sbjct 227 AAGAAGAAGAAGGTAAGCAGAAACCCAGAAACA-AATCTCCTCT-TCAATC-TCAATTCA 283
Query 118 TGTTCCAAGAGAAAGGACCTCTCAGCTGCGTTGGCTCTTTATGATGCAGCTATCACTTCC 177
|| |||||| ||||||||||||||||| || || |||||||||||||| |||||||||
Sbjct 284 TGCTCCAAGTCCAAGGACCTCTCAGCTGCATTAGCACTTTATGATGCAGCCATCACTTCC 343
Query 178 AGTGACA-TCCGCCTCAACCAGCAACACTTCCAATCCCTTCTTTATCTCTGCTCCGCGTT 236
||||| | | || |||| ||||||||| || ||| | ||||| || || ||||| || ||
Sbjct 344 AGTGA-AGTACGTCTCAGCCAGCAACATTTTCAAACGCTTCTGTACCTATGCTCAGC-TT 401
Query 237 -CATTAGTGACCCATCTCTTCAA-ACACTTGCCATTGACCGGGGTTTTC-AAATTTTTGA 293
||||| |||| |||||||||| || |||||||||||||| || |||| | ||||||||
Sbjct 402 CCATTACTGACATATCTCTTCAATAC-CTTGCCATTGACCGTGG-TTTCGAGATTTTTGA 459
Query 294 CCGTATGGTTAGTTCAGGGATAAGTCCCAATGAATCATCCGTCACTGCAGTGGC-ACGAC 352
|||||||||||||| ||||||||||| ||||| |||| || ||| ||||||| | |||
Sbjct 460 TCGTATGGTTAGTTCGGGGATAAGTCCTAATGAGGCATCTGTTACTTCAGTGGCTA-GAC 518
Query 353 TAGCTGCTGCCAAGGGTGACGGTGATTATGCTTTCAAGCTTGTCAAAGA-TATTG--TCG 409
| |||||||| || ||| | |||||||||||||||||| |||| || || | ||| ||
Sbjct 519 TGGCTGCTGCTAAAGGTAATGGTGATTATGCTTTCAAGGTTGTTAAGGAGT-TTGTTTC- 576
Query 410 TGGTTGGCGGTGTATCGGTCCCTCGTCTGAGAACTTATGCTCCGGCTTTGCTCTGTTTCT 469
| ||||| ||||| ||| | ||||||||||| || ||||| |||||||||||||||||||
Sbjct 577 T-GTTGGAGGTGTGTCGATTCCTCGTCTGAGGACATATGCGCCGGCTTTGCTCTGTTTCT 635
Query 470 GTGAG-AGTTTGGAGGCTGAGAAGGGTTATGAAGTGGAAGAGCACATGGATGCTTCAGGT 528
| ||| || ||||||||||| ||||||||||| || |||||||||||||| ||| |||||
Sbjct 636 GCGAGAAG-TTGGAGGCTGAAAAGGGTTATGAGGTAGAAGAGCACATGGAAGCTGCAGGT 694
Query 529 ATTATGTTGGAGGAGGCAGAGATCTCTGCTTTGCTGAAGGTAAGCGCTGCCACGGGCCGA 588
||| ||||||||||||||||| || |||||| |||||||||| ||||||||||| |||
Sbjct 695 ATTGCATTGGAGGAGGCAGAGATATCGGCTTTGTTGAAGGTAAGTGCTGCCACGGGTCGA 754
Query 589 GAAAACAAGGTTTATAGATATTTGCATAAATTAAGAGAATGTGTTGGCTGCGTTAGTGAA 648
||||||||||||||||||||||| ||||| || || |||| |||||||||||||||||||
Sbjct 755 GAAAACAAGGTTTATAGATATTTACATAAGTTGAGGGAATATGTTGGCTGCGTTAGTGAA 814
Query 649 GAAACTTCAAAAACAATCGAGGAATGGTTTTATGGAGTGAAAGCTAGCGAAGTTAGTGAT 708
||||||| |||| || ||||||||||| | ||||| |||||| | || ||| |||||
Sbjct 815 GAAACTTTGAAAATTATTGAGGAATGGTTCTGTGGAGAAAAAGCTGGTGAGGTTGGTGAT 874
Query 709 AA-GGCGATTGGTTCTGATATTGAGCTGCTTAGAGCAGCTGTTTTGAAGAATGGGGGTGG 767
|| || |||||||||||| ||| | ||||||||| |||||||||||| ||||| |||||
Sbjct 875 AATGG-AATTGGTTCTGATGTTGGGATGCTTAGAGAAGCTGTTTTGAATAATGGAGGTGG 933
Query 768 GTGGCACGGTCTTGGTTGGGTTGGGGAAGGCAAATGGATTGTGAAGAAAGGTAATGTTAG 827
||||||||| | ||| ||||||||||| || ||||||| ||| |||||||||||||||||
Sbjct 934 GTGGCACGGGCATGGGTGGGTTGGGGAGGGTAAATGGACTGTAAAGAAAGGTAATGTTAG 993
Query 828 CCCAGCCGGAAAATGTTTGAGCTGTGGTGAGCATTTGGCTTGTGTTGATACCAATGAGGT 887
| || | |||| |||||||||||| ||||||| || |||||||| ||||||||||||||
Sbjct 994 CTCAACAGGAAGATGTTTGAGCTGCAGTGAGCAGTTAGCTTGTGTAGATACCAATGAGGT 1053
Query 888 AGAGACTGAAAATTTTGTGAATTCTTTGGTGGCTTTGGCTATGGAGAGGAAGGCGAAGAT 947
||| || | || |||||| ||||||||||||||||||||||||| |||||| | |||||
Sbjct 1054 AGAAACACAGAAGTTTGTGGATTCTTTGGTGGCTTTGGCTATGGATAGGAAGACAAAGAT 1113
Query 948 GAATTCATGCGAG-CCTATGGCGGAT-TTCAGCGAGTTTCAGGAGTGGCTTGA-AAAGCA 1004
||||||||| ||| | || | || | ||||||||||||||||| |||||||| ||| ||
Sbjct 1114 GAATTCATGTGAGACAAAT-GTGG-TCTTCAGCGAGTTTCAGGACTGGCTTGAGAAA-CA 1170
Query 1005 TGGAGACTACGAAGCTATACTAGATGGAGCAAATATTGGGCTTTACCAACAAAATTTTAC 1064
|||||| |||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 1171 TGGAGATTACGAAGCTATAGTAGATGGAGCAAATATTGGGCTCTACCAACAAAATTTTGT 1230
Query 1065 AGATGGTGGCTTCAGTCTACCACAGCTTGAAGCTGTAG-TGAAGGAACTTTACAATAAAA 1123
|||||| | |||||||| ||||||||||| |||| | |||||||||||||| | |||
Sbjct 1231 AGATGGCAGTTTCAGTCTTTCACAGCTTGAATCTGT-GATGAAGGAACTTTACCGTGAAA 1289
Query 1124 GTGGTAACAAAAAACAGCCGCTAATTCTCTTGCACAAGAAACGGGTCAATG-CACTTTTA 1182
||||||| || ||| ||| |||||||| |||||||||| ||||||||| | | ||||||
Sbjct 1290 GTGGTAATAACAAATGGCCCCTAATTCTATTGCACAAGAGACGGGTCAA-GACGCTTTTA 1348
Query 1183 GGAAACCCGAA-TCACCGGAATCTGGTGGAGGAATGGATTGA-TAACAATGTCCTTTACG 1240
| |||||| || ||||||||||||||| || ||||||||| | |||| |||||| || |
Sbjct 1349 GAAAACCC-AACTCACCGGAATCTGGTTGAAGAATGGATT-AGTAACGGTGTCCTGTATG 1406
Query 1241 CGACCCCACCAGGTTCCAACGATGATTGGTATTGGCTGTATGCTGCTGCTAAACTCAAGT 1300
| || |||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 1407 CAACTCCACCAGGTTCCAATGATGATTGGTATTGGCTGTATGCTGCTGCTAAGCTCAAGT 1466
Query 1301 GTTTGCTTGTGACTAATGATGAGATGAGAGATCACATTTTTGAACTATTAAGTAATAGTT 1360
||||||||||||| ||||||||||||||||| |||||||||||||| ||| | | || ||
Sbjct 1467 GTTTGCTTGTGACAAATGATGAGATGAGAGACCACATTTTTGAACTCTTAGGGAGTACTT 1526
Query 1361 TTTTCCAAAAATGGAAAGAAAGACATCAAGTGCGGTTTACCTTTGTGAAAGGCTGTC-TC 1419
|||||||||| ||||||||||||||||| || |||| ||| ||||||||||| | | |
Sbjct 1527 TTTTCCAAAAGTGGAAAGAAAGACATCAGGTCCGGTATACTTTTGTGAAAGG-TAACCTG 1585
Query 1420 AAGCTTGAAATGCCACCTCCTTTTTCAGTTGTGATCCAGGAATCAGAGAAAGGATCATGG 1479
|||||||||||||| |||||||||| ||||| || ||||||||||||||||| ||||||
Sbjct 1586 AAGCTTGAAATGCCGTCTCCTTTTTCGGTTGTCATTCAGGAATCAGAGAAAGGGTCATGG 1645
Query 1480 CACATTCCAA-TCACGA-GTC-AAGACAATGAGGAATCTTCAAGAAGTTGGATGTGCATT 1536
|| |||| || | | | | || ||||||| || |||||||||| ||||||||| |||
Sbjct 1646 CAT-TTCCCGGTCTC-ATG-CGAAAACAATGAAGAGTCTTCAAGAACTTGGATGTGTATT 1702
Query 1537 A 1537
|
Sbjct 1703 A 1703
> AT2G02890.1 | Symbols: | F-box family protein | chr2:843913-846616
REVERSE LENGTH=1596
Length=1596
Score = 126 bits (68), Expect = 6e-28
Identities = 94/106 (89%), Gaps = 4/106 (4%)
Strand=Plus/Plus
Query 443 CTTATGCTCCGGCTTTGCTCTGTTTCTGTGAGAGTTT-GGAGGC-TGAGAAGGGTTATGA 500
||||||||||||||||||||||||||||||||| ||| ||| || | | |||| ||||||
Sbjct 281 CTTATGCTCCGGCTTTGCTCTGTTTCTGTGAGACTTTTGGAAGCCTAA-AAGG-TTATGA 338
Query 501 AGTGGAAGAGCACATGGATGCTTCAGGTATTATGTTGGAGGAGGCA 546
||||||| | |||||| ||||||||| || ||||||||||||||||
Sbjct 339 AGTGGAAAATCACATGAATGCTTCAGTTACTATGTTGGAGGAGGCA 384
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76706432760
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5