BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg889986
Length=1440
Score E
Sequences producing significant alignments: (Bits) Value
AT4G39280.1 | Symbols: | phenylalanyl-tRNA synthetase, putativ... 1570 0.0
> AT4G39280.1 | Symbols: | phenylalanyl-tRNA synthetase, putative
/ phenylalanine--tRNA ligase, putative | chr4:18281444-18284900
REVERSE LENGTH=1724
Length=1724
Score = 1570 bits (850), Expect = 0.0
Identities = 1281/1480 (87%), Gaps = 66/1480 (4%)
Strand=Plus/Plus
Query 1 ATGGCAGAAAGA-GCGATACTTGGGTTTCTGCAGAACAATGAGCAGATCCCGGATTCGGG 59
||||| | |||| |||||||| ||||| || ||||||||||| |||||| | ||||||||
Sbjct 70 ATGGC-GGAAGAGGCGATACTAGGGTTCCTTCAGAACAATGAACAGATCACTGATTCGGG 128
Query 60 TCTATTTTCTGCCGAGCACAACCTTGACCACGATC-AAGTCAAGAATGTCATCAGAAGGC 118
|| ||| ||||||||| |||| | |||||| | | || || |||||||||| ||| |
Sbjct 129 TCAATTCTCTGCCGAGTTCAACATCGACCAC-AACGAACTCGTCAATGTCATCAAAAGTC 187
Query 119 TCCAGGGTTTTCGTTACATCGATGCTCAGGACATT-ACTAGGACGACATGGGTTTTGACT 177
|||| ||||||||||||||||||| |||||||||| | |||| ||||||| || |||||
Sbjct 188 TCCATGGTTTTCGTTACATCGATGTTCAGGACATTAAAAAGGA-GACATGGATTCTGACT 246
Query 178 GAAGAAGGGAACAAATATGCTGCACAAGGATCACCAGAGGTACAACTTTTCTTAGCTGTG 237
|| |||||||| |||||||| ||| |||| ||||||||||| |||||||||||||||||
Sbjct 247 GATGAAGGGAAGAAATATGCGGCAGAAGGGTCACCAGAGGTTCAACTTTTCTTAGCTGTT 306
Query 238 CCAGAAGAAGGTAGCATATC--------AG-T---GAAAAAGCTAG---GTG-AATCGAT 281
|| |||||||| |||||||| || | ||||||| ||| || | || |
Sbjct 307 CCTGAAGAAGGCAGCATATCAAAAGATGAGCTCCAGAAAAAGTTAGCTCCTGCAGTC--T 364
Query 282 TGACAGATTTGCCTGGAAAT-ATGCT-AAAGAAAACAAGTGGCTGGAATTGGGAGAAAAG 339
| | ||| | | || | | | ||| || ||||||||||| ||||| | || | ||||
Sbjct 365 TCA-AGA-TCGGCT-GTTCTCAAGCTGGAA-AAAACAAGTGGGTGGAAAT-GG-G-AAAG 417
Query 340 CAAGTATCGAGGAAGGTTCAACATGTAGATGATATAGTGCAA-GCTCTGCTTTTACAGAT 398
||||| |||||||||||| || ||||||| |||| |||| || || | ||||||||| ||
Sbjct 418 CAAGTCTCGAGGAAGGTTAAAGATGTAGAAGATAAAGTGAAAGGC-CAGCTTTTACAAAT 476
Query 399 ACAAGAAGGGAAGGAAATTGACGAAGACAGTATCGATTTTCTCAAACG-CAGAAAAAATC 457
|||| ||||||||||| ||||| |||| |||||| ||| ||| ||| | ||| |||| |
Sbjct 477 ACAACAAGGGAAGGAATTTGACAAAGAAAGTATCAATTCTCTTAAA-GCCAG--AAAA-C 532
Query 458 TCATA-AAACA-AGATAAATGGAATGGGTATTCTTCCATAAAGAAAGGTCCTAATTATTC 515
||||| | || |||| |||||| ||||| |||| |||||||||||||||||||| |
Sbjct 533 TCATAGTACCACAGAT--ATGGAAGGGGTA---TTCCGTAAAGAAAGGTCCTAATTATGC 587
Query 516 TCCCGAGAGAAAGAAGGTGTCCACCGATTTGACTCGGGAAAATCTACAAAACTGGAAAGA 575
||||||||||||||| ||| | |||||||||||||| |||||||| ||||||||||||||
Sbjct 588 TCCCGAGAGAAAGAAAGTGGCTACCGATTTGACTCGAGAAAATCTTCAAAACTGGAAAGA 647
Query 576 GCTAGAATTCAAGGAGTATAACTTCAATGCTAAAGGAGCGCCTGTTGAGGCTGGCCTTCT 635
| |||| || ||||||||||||||||| |||||||||||||||||||| ||||| | |||
Sbjct 648 GTTAGAGTTTAAGGAGTATAACTTCAAAGCTAAAGGAGCGCCTGTTGACGCTGGGCATCT 707
Query 636 TCACCCTCTTCTCAAGGTGCGGAAGCAGTTTAAAGACATATTTGTTCAGATGGGGTTTGA 695
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 708 TCACGCTCTTCTCAAGGTGCGGAAGCAGTTTAAAGACATATTTGTTCAGATGGGGTTTGA 767
Query 696 GGAAATGCCAACAAATAATTTTGTGGAGAGCAGCTTCTGGAATTTTGATGCATTGTTCCA 755
||| ||||||||||| || | |||||||||||||||||||||||||||||| ||||||||
Sbjct 768 GGAGATGCCAACAAACAACTATGTGGAGAGCAGCTTCTGGAATTTTGATGCTTTGTTCCA 827
Query 756 GCCTCAGCAGCACCCTGCTCGTGATTCTCACGACACCTTCTTTCTAAAAGCTCCTTGTAC 815
|||||||||||||||||||||||||||||| ||||||||||||||||||| ||| | |||
Sbjct 828 GCCTCAGCAGCACCCTGCTCGTGATTCTCATGACACCTTCTTTCTAAAAGTTCCCTCTAC 887
Query 816 GACAAGGACACTTCCAGAAGATTATGTTGAGAGGGTGAAATGTGTTCATGAGTCTGGTGG 875
||||| |||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 888 TACAAGAACACTTCCGGAAGATTATGTTGAGAGGGTGAAACGTGTTCATGAGTCTGGTGG 947
Query 876 ATATGGATCAAGAGGGTATAATTGTGATTGGAAGAGAGAAGAAGCAAACAAGAATCTTCT 935
|||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 948 TTATGGATCAAGAGGGTATAATTATGATTGGAAAAGAGAAGAAGCAAACAAGAATCTTCT 1007
Query 936 CCGAACTCACACAACAGCCGTCTCTTCTAGGATGCTTTATGCACTAGCACAGAAACCTTT 995
|| || |||||||| || ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1008 TCGTACCCACACAACGGCTGTCTCATCTAGGATGCTTTATGCACTAGCACAGAAACCTTT 1067
Query 996 TGTCCCCAAGAAGTATTTTTCGATTGATCGTGTGTTCAGAAACGAGGCTGTTGATCGGAC 1055
||| ||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1068 TGTGCCCAAGAAGTACTTTTCGATTGACCGTGTCTTCAGAAACGAGGCTGTTGATCGGAC 1127
Query 1056 CCATCTGGCAGAGTTCCATCAAATGGAAGGTTTGATATGTGACCGGGGCCTTACA-TTGG 1114
||| || ||||||||||||||||| ||||||||||||||||| |||||||||||| ||||
Sbjct 1128 CCACCTTGCAGAGTTCCATCAAATTGAAGGTTTGATATGTGATCGGGGCCTTACACTTGG 1187
Query 1115 GAGACCTGATTGGTGTACTAAAAGACTTCTTCTCACGCCTAGC--TG-CG-----G--TT 1164
|||||||||||||||| || ||||||||||||||||| ||| || || | ||
Sbjct 1188 -AGACCTGATTGGTGTATTAGAAGACTTCTTCTCACGCTTAGGGATGTCGAAATTGCGTT 1246
Query 1165 -CAAGCCAGCGTACAACCCTTACACAGAACCA----TGGAGATCTTCAGCTACCATGAAA 1219
||||||||| ||||||||||||||||| ||| ||||||| |||||||||||||||
Sbjct 1247 TCAAGCCAGCTTACAACCCTTACACAGAGCCAAGCATGGAGATTTTCAGCTACCATGAAG 1306
Query 1220 AATTAAAGAAGTGGGTGGAGATTGGAAACTCTGGAATGTTCAGACCCGAAATGCTTCTAC 1279
||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1307 GTTTAGGGAAGTGGGTGGAGATTGGAAACTCTGGGATGTTCAGACCCGAAATGCTTCTAC 1366
Query 1280 CGATGGGTCTCCCTGAGGATGTCCGAGTCATAGCTTGGGGTCT-TGGTCTTGAAAGACCA 1338
||||||||||||| |||||||| ||||||| ||||||||||| | |||||||||||||
Sbjct 1367 CGATGGGTCTCCCCGAGGATGTTAGAGTCATCGCTTGGGGTCTCTC-TCTTGAAAGACCA 1425
Query 1339 ACAATGATTTTATATGGTATCGACAACATCCGAGATTTGTTTGGACACAAGGTGGATCTC 1398
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1426 ACAATGATATTATACGGTATCGACAACATCCGAGATTTGTTTGGACACAAGGTGGATCTC 1485
Query 1399 GGTCTCATTAAACGGAATCCGATCTGCCGAATTGGAATCT 1438
| ||| ||||||||||||||||||||||||||||||||||
Sbjct 1486 GATCTTATTAAACGGAATCCGATCTGCCGAATTGGAATCT 1525
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70983570630
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5