BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg890006 Length=2112 Score E Sequences producing significant alignments: (Bits) Value AT4G04910.1 | Symbols: NSF | AAA-type ATPase family protein | c... 1016 0.0 > AT4G04910.1 | Symbols: NSF | AAA-type ATPase family protein | chr4:2489417-2495766 REVERSE LENGTH=2608 Length=2608 Score = 1016 bits (550), Expect = 0.0 Identities = 929/1109 (84%), Gaps = 38/1109 (3%) Strand=Plus/Plus Query 135 TGATGGAAGTATTGCTCTAAATTCGATTCAACGACGACATGCTAGAGTTTCTG-CTGGTG 193 |||||||| ||||||||| ||| | |||||| | ||||| ||||||||||| | |||||| Sbjct 295 TGATGGAAATATTGCTCTCAATGCTATTCAAAGGCGACACGCTAGAGTTTC-GACTGGTG 353 Query 194 ACAAT-GTATATG-TAACAAGATTTATTCCTCCTGAAAACTTTGACT-TGACTGTTCTGA 250 | || |||| || || | |||||| ||||||||||||| ||||| | || || | |||| Sbjct 354 A-TATGGTATCTGTTAGC-AGATTTGTTCCTCCTGAAAATTTTGA-TCTGGCTATGCTGA 410 Query 251 CAG-TTGACTTAGAATTTGTTAA-AAGAGGGACTAAAAACGAACAGATTGATGCTACTCT 308 | | | || || |||||||| || || ||| ||||||| ||| ||| |||||||| |||| Sbjct 411 C-GCTGGAGTTGGAATTTGTGAAGAA-AGGAACTAAAAGCGAGCAGGTTGATGCTGCTCT 468 Query 309 CCTCTCAACCCAACTGAAGAAGAAATTCATTAATCAGGTCTTGACAGTAGGCCAGAGAGT 368 ||| || ||||| || |||| ||||| || || ||||||||||| |||||||||| || Sbjct 469 CCTTTCGACCCAGCTTAAGAGGAAATACACCAACCAGGTCTTGACTGTAGGCCAGAAAGC 528 Query 369 TACATTTGAGTATCATGGAACTAATTACATTCTTACGGTCAATCGAGCAGTTGTACTGGC 428 ||||||||||||||||||||||||||||||||||||||||||||||| | ||| || Sbjct 529 GACATTTGAGTATCATGGAACTAATTACATTCTTACGGTCAATCGAGCGGATGTTGAGG- 587 Query 429 AGACGAGAACCAAACTAATGGTATCGAAAGAGGGATGATCGGTAACGATACATAT-TTCG 487 | | || | || || || || || ||||||||| || || ||| || || ||| || | Sbjct 588 -GTC-AGGATCACACGAACGGCATTGAAAGAGGGTTGCTCTCTAAAGACACGTATATT-G 644 Query 488 TGTTTGAAGCATCAAATGCAAGTGGTATAAAGATTATCAACCAACGAGAGGCTGCTA-CT 546 ||||||||||||||||||||||||| ||||||||| |||||||||| || ||||||| | Sbjct 645 TGTTTGAAGCATCAAATGCAAGTGGCATAAAGATTGTCAACCAACGGGAAGCTGCTAGC- 703 Query 547 AGCAAAATATTTAAGGAAAAGGAGTTTAACCTTCAATCCCTGGGTATTGGTGG-CTTAAA 605 ||||| ||||| || | ||||| ||||||||| | || ||||| || ||||| ||| Sbjct 704 AGCAATATATTCAAACATAAGGAATTTAACCTTGAGTCGCTGGGAATAGGTGGTCTTGG- 762 Query 606 TGCAGAGTTTGTTGATATATTCCGAAGAGCATTTGCTTCTCGTATATTTCCTCCTCATCT 665 ||||||||||| ||||||||| ||||||| |||||||||||| |||||||||||||| | Sbjct 763 TGCAGAGTTTGCTGATATATTTAGAAGAGCTTTTGCTTCTCGTGTATTTCCTCCTCATGT 822 Query 666 CAATTA-CAGACTTGGGGCA-AAA-CACGTTAGAGGGATGCTTCTTTTTGGACCTCCTGG 722 || | |||||| ||| | ||| || |||| ||||||||||||||||||||||||||| Sbjct 823 CACC-AGCAGACT-GGGA-ATAAAGCATGTTAAAGGGATGCTTCTTTTTGGACCTCCTGG 879 Query 723 TACTGGCAAGACC-TTGATCGCACGCCAAACTGGAAAAATGCTCAATGGAAACGAGCCAA 781 ||||||||| ||| || || ||||| |||| |||||| ||||| |||||||| || |||| Sbjct 880 TACTGGCAAAACCCTT-ATGGCACGGCAAATTGGAAAGATGCTTAATGGAAAGGATCCAA 938 Query 782 AGATAGTGAATGGTCCTGAAGTGCTAAGCAAGTTTGTCGGTGAGACCGAAAAGAATGTAA 841 |||| || ||||| ||||| ||||| ||||||||||| |||||||| ||||||||||||| Sbjct 939 AGATCGTTAATGGGCCTGAGGTGCTGAGCAAGTTTGTTGGTGAGACAGAAAAGAATGTAA 998 Query 842 GAGACCTGTTTGCTGATGCTGAG-AATGACCAGAGAACCCTTGGTGATGAC-AGTGAGCT 899 ||||| | ||||||||||||||| || |||||||| ||||||||||||| | |||||| | Sbjct 999 GAGACTTATTTGCTGATGCTGAGCAA-GACCAGAGGACCCTTGGTGATG-CTAGTGAGTT 1056 Query 900 GCATGTCATTATCTTCGATGAAATCGATGCTATTTGTAAGTCAAGAGGATCAAGCAGGGA 959 |||||||||||| || ||||| || ||||||||||| ||||||||||| |||| ||| || Sbjct 1057 GCATGTCATTATTTTTGATGAGATTGATGCTATTTGCAAGTCAAGAGGTTCAACCAGAGA 1116 Query 960 TGGCACAGGTGTCCATGACAGTATTGTGAACCAGCTCCTGACCAAGATAGATGGTGTGGA 1019 |||||||||||||||||| |||||||| |||||||| |||| ||||||||||||||||| Sbjct 1117 TGGCACAGGTGTCCATGATAGTATTGTAAACCAGCTTTTGACAAAGATAGATGGTGTGGA 1176 Query 1020 GGCCTTGAACAATGTTTTACTTATCGGAATGACTAACCGGAAGGATATGCTTGATGAAGC 1079 |||||| ||||||||||| || || |||||||| ||| | |||||| ||||||||||||| Sbjct 1177 GGCCTTAAACAATGTTTTGCTGATTGGAATGACAAACAGAAAGGATTTGCTTGATGAAGC 1236 Query 1080 TCTTCTAAGGCCTGGAAGGTTAGAGGTTCATATAGAGATTGGCCTTCCTGATGATGCTGG 1139 |||| ||||||||||||| || |||||||| | ||||| ||||||||||||| ||||| Sbjct 1237 TCTTTTAAGGCCTGGAAGATTGGAGGTTCAGGTTGAGATAAGCCTTCCTGATGAAGCTGG 1296 Query 1140 ACGTTT-CGAAATTCTTCAGATTCATACGAA-AATGATGAAGGAAAATTCTTTCCTTGCT 1197 ||| | | ||||||||||||||||||| || || ||||||||||||||||||||||| Sbjct 1297 GCGTCTAC-AAATTCTTCAGATTCATACAAATAA-GATGAAGGAAAATTCTTTCCTTGGG 1354 Query 1198 CCTGATGTCAATCTTCAAGAGCTTG-TGC 1225 ||||| ||||||| |||||||||| ||| Sbjct 1355 ACTGATATCAATCTCCAAGAGCTTGCTGC 1383 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 104718336870 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5