BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg890006
Length=2112
Score E
Sequences producing significant alignments: (Bits) Value
AT4G04910.1 | Symbols: NSF | AAA-type ATPase family protein | c... 1016 0.0
> AT4G04910.1 | Symbols: NSF | AAA-type ATPase family protein |
chr4:2489417-2495766 REVERSE LENGTH=2608
Length=2608
Score = 1016 bits (550), Expect = 0.0
Identities = 929/1109 (84%), Gaps = 38/1109 (3%)
Strand=Plus/Plus
Query 135 TGATGGAAGTATTGCTCTAAATTCGATTCAACGACGACATGCTAGAGTTTCTG-CTGGTG 193
|||||||| ||||||||| ||| | |||||| | ||||| ||||||||||| | ||||||
Sbjct 295 TGATGGAAATATTGCTCTCAATGCTATTCAAAGGCGACACGCTAGAGTTTC-GACTGGTG 353
Query 194 ACAAT-GTATATG-TAACAAGATTTATTCCTCCTGAAAACTTTGACT-TGACTGTTCTGA 250
| || |||| || || | |||||| ||||||||||||| ||||| | || || | ||||
Sbjct 354 A-TATGGTATCTGTTAGC-AGATTTGTTCCTCCTGAAAATTTTGA-TCTGGCTATGCTGA 410
Query 251 CAG-TTGACTTAGAATTTGTTAA-AAGAGGGACTAAAAACGAACAGATTGATGCTACTCT 308
| | | || || |||||||| || || ||| ||||||| ||| ||| |||||||| ||||
Sbjct 411 C-GCTGGAGTTGGAATTTGTGAAGAA-AGGAACTAAAAGCGAGCAGGTTGATGCTGCTCT 468
Query 309 CCTCTCAACCCAACTGAAGAAGAAATTCATTAATCAGGTCTTGACAGTAGGCCAGAGAGT 368
||| || ||||| || |||| ||||| || || ||||||||||| |||||||||| ||
Sbjct 469 CCTTTCGACCCAGCTTAAGAGGAAATACACCAACCAGGTCTTGACTGTAGGCCAGAAAGC 528
Query 369 TACATTTGAGTATCATGGAACTAATTACATTCTTACGGTCAATCGAGCAGTTGTACTGGC 428
||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||
Sbjct 529 GACATTTGAGTATCATGGAACTAATTACATTCTTACGGTCAATCGAGCGGATGTTGAGG- 587
Query 429 AGACGAGAACCAAACTAATGGTATCGAAAGAGGGATGATCGGTAACGATACATAT-TTCG 487
| | || | || || || || || ||||||||| || || ||| || || ||| || |
Sbjct 588 -GTC-AGGATCACACGAACGGCATTGAAAGAGGGTTGCTCTCTAAAGACACGTATATT-G 644
Query 488 TGTTTGAAGCATCAAATGCAAGTGGTATAAAGATTATCAACCAACGAGAGGCTGCTA-CT 546
||||||||||||||||||||||||| ||||||||| |||||||||| || ||||||| |
Sbjct 645 TGTTTGAAGCATCAAATGCAAGTGGCATAAAGATTGTCAACCAACGGGAAGCTGCTAGC- 703
Query 547 AGCAAAATATTTAAGGAAAAGGAGTTTAACCTTCAATCCCTGGGTATTGGTGG-CTTAAA 605
||||| ||||| || | ||||| ||||||||| | || ||||| || ||||| |||
Sbjct 704 AGCAATATATTCAAACATAAGGAATTTAACCTTGAGTCGCTGGGAATAGGTGGTCTTGG- 762
Query 606 TGCAGAGTTTGTTGATATATTCCGAAGAGCATTTGCTTCTCGTATATTTCCTCCTCATCT 665
||||||||||| ||||||||| ||||||| |||||||||||| |||||||||||||| |
Sbjct 763 TGCAGAGTTTGCTGATATATTTAGAAGAGCTTTTGCTTCTCGTGTATTTCCTCCTCATGT 822
Query 666 CAATTA-CAGACTTGGGGCA-AAA-CACGTTAGAGGGATGCTTCTTTTTGGACCTCCTGG 722
|| | |||||| ||| | ||| || |||| |||||||||||||||||||||||||||
Sbjct 823 CACC-AGCAGACT-GGGA-ATAAAGCATGTTAAAGGGATGCTTCTTTTTGGACCTCCTGG 879
Query 723 TACTGGCAAGACC-TTGATCGCACGCCAAACTGGAAAAATGCTCAATGGAAACGAGCCAA 781
||||||||| ||| || || ||||| |||| |||||| ||||| |||||||| || ||||
Sbjct 880 TACTGGCAAAACCCTT-ATGGCACGGCAAATTGGAAAGATGCTTAATGGAAAGGATCCAA 938
Query 782 AGATAGTGAATGGTCCTGAAGTGCTAAGCAAGTTTGTCGGTGAGACCGAAAAGAATGTAA 841
|||| || ||||| ||||| ||||| ||||||||||| |||||||| |||||||||||||
Sbjct 939 AGATCGTTAATGGGCCTGAGGTGCTGAGCAAGTTTGTTGGTGAGACAGAAAAGAATGTAA 998
Query 842 GAGACCTGTTTGCTGATGCTGAG-AATGACCAGAGAACCCTTGGTGATGAC-AGTGAGCT 899
||||| | ||||||||||||||| || |||||||| ||||||||||||| | |||||| |
Sbjct 999 GAGACTTATTTGCTGATGCTGAGCAA-GACCAGAGGACCCTTGGTGATG-CTAGTGAGTT 1056
Query 900 GCATGTCATTATCTTCGATGAAATCGATGCTATTTGTAAGTCAAGAGGATCAAGCAGGGA 959
|||||||||||| || ||||| || ||||||||||| ||||||||||| |||| ||| ||
Sbjct 1057 GCATGTCATTATTTTTGATGAGATTGATGCTATTTGCAAGTCAAGAGGTTCAACCAGAGA 1116
Query 960 TGGCACAGGTGTCCATGACAGTATTGTGAACCAGCTCCTGACCAAGATAGATGGTGTGGA 1019
|||||||||||||||||| |||||||| |||||||| |||| |||||||||||||||||
Sbjct 1117 TGGCACAGGTGTCCATGATAGTATTGTAAACCAGCTTTTGACAAAGATAGATGGTGTGGA 1176
Query 1020 GGCCTTGAACAATGTTTTACTTATCGGAATGACTAACCGGAAGGATATGCTTGATGAAGC 1079
|||||| ||||||||||| || || |||||||| ||| | |||||| |||||||||||||
Sbjct 1177 GGCCTTAAACAATGTTTTGCTGATTGGAATGACAAACAGAAAGGATTTGCTTGATGAAGC 1236
Query 1080 TCTTCTAAGGCCTGGAAGGTTAGAGGTTCATATAGAGATTGGCCTTCCTGATGATGCTGG 1139
|||| ||||||||||||| || |||||||| | ||||| ||||||||||||| |||||
Sbjct 1237 TCTTTTAAGGCCTGGAAGATTGGAGGTTCAGGTTGAGATAAGCCTTCCTGATGAAGCTGG 1296
Query 1140 ACGTTT-CGAAATTCTTCAGATTCATACGAA-AATGATGAAGGAAAATTCTTTCCTTGCT 1197
||| | | ||||||||||||||||||| || || |||||||||||||||||||||||
Sbjct 1297 GCGTCTAC-AAATTCTTCAGATTCATACAAATAA-GATGAAGGAAAATTCTTTCCTTGGG 1354
Query 1198 CCTGATGTCAATCTTCAAGAGCTTG-TGC 1225
||||| ||||||| |||||||||| |||
Sbjct 1355 ACTGATATCAATCTCCAAGAGCTTGCTGC 1383
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104718336870
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5