BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg890071
Length=1017
Score E
Sequences producing significant alignments: (Bits) Value
AT4G21200.1 | Symbols: ATGA2OX8, GA2OX8 | gibberellin 2-oxidase... 1546 0.0
> AT4G21200.1 | Symbols: ATGA2OX8, GA2OX8 | gibberellin 2-oxidase
8 | chr4:11302685-11306601 FORWARD LENGTH=1083
Length=1083
Score = 1546 bits (837), Expect = 0.0
Identities = 962/1022 (94%), Gaps = 10/1022 (1%)
Strand=Plus/Plus
Query 1 ATGGATCCACCATTCAACGAAATATACAA-AACCCTTTTGTACAATCAGATCACAAACAC 59
||||||||||||||||||||||||||||| || ||||||||| |||||||||||||| |
Sbjct 67 ATGGATCCACCATTCAACGAAATATACAATAA-CCTTTTGTATAATCAGATCACAAAGAA 125
Query 60 AGA-AAGAGATGTTCCTGAAATACCCTTTAGCTTCTCCGTCACGGCCGTCTTCGAGGAGG 118
||| || |||||| |||||||||||||||||||||| ||||| |||||| |||||||||
Sbjct 126 AGATAA-CGATGTTTCTGAAATACCCTTTAGCTTCTCAGTCACAGCCGTCGTCGAGGAGG 184
Query 119 TGGAGCTTCCTGTGATTGACGTCAGCCGTCTCATCCATGGAGCCGAGAAGGAGAGAGAGA 178
||||||||||||||||||||||||||||| | || ||||||||||| ||||||||||||
Sbjct 185 TGGAGCTTCCTGTGATTGACGTCAGCCGTTTGATTGATGGAGCCGAGGAGGAGAGAGAGA 244
Query 179 ACTGTAAGGAAGAGATTGCGAGAGCTTCGAGGGAGTGGGGATTTTTTCAAGTAATAAACC 238
| |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 245 AATGTAAGGAAGCGATTGCGAGAGCTTCGAGGGAGTGGGGATTTTTTCAAGTGATAAACC 304
Query 239 ATGGAATATCAATGGATGTGTTGGAGAAGATGAGACAAGAACAAATTAGGGTCTTTAGAG 298
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 305 ATGGAATATCAATGGATGTGTTGGAGAAGATGAGACAAGAGCAAATTAGGGTCTTTAGAG 364
Query 299 AGCCTTTTGACAAGAAAAGTAAGTCGGAGAAATTCTCCGCTGGGAGTTACCGGTGGGGAA 358
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 365 AGCCTTTTGACAAGAAAAGTAAGTCGGAGAAATTTTCCGCCGGGAGTTACCGGTGGGGAA 424
Query 359 CGCCGTCAGCCACTTGTCTCCGGCAGCTTTCTTGGTCAGAAGCTTTTCATGTTCCCATGA 418
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 425 CGCCGTCAGCCACTTCTATCCGGCAGCTTTCTTGGTCAGAAGCTTTTCATGTTCCCATGA 484
Query 419 CAGATATTTCTAACAACAAGGACTTTACTACTCTCAGCTCAACAATGGAGAAATTTGCCT 478
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 485 CAGATATTTCTGACAACAAGGACTTTACTACTCTCAGCTCAACAATGGAGAAATTTGCTT 544
Query 479 CGGAAGCGGAGGC-TCTAGCATATATGTTGGCAGAGGTTCTTGCAGAAAAATCTGGACAA 537
||||| | ||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 545 CGGAATCAGAGGCAT-TAGCATATATGTTGGCAGAGGTTCTTGCAGAAAAATCTGGACAA 603
Query 538 AAATCAAGTTTTTTCAAAGAAAACTGTGTGAGGAATACATGTTATCTAAGGATGAACCGT 597
|| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 604 AATTCAAGTTTCTTCAAAGAAAACTGTGTGAGAAATACATGTTATCTAAGGATGAACCGA 663
Query 598 TATCCGCCTTGTCCGAAACCATCAGAGGTGTACGGATTAATGCCACACACAGATAGTGAT 657
||||| |||||||| |||||||| |||||||||||||||||||||||||| || ||||||
Sbjct 664 TATCCACCTTGTCCCAAACCATCGGAGGTGTACGGATTAATGCCACACACGGACAGTGAT 723
Query 658 TTCCTCACAATCTTGTATCAAGATCAAGTCGGAGGACTCCAACTCATCAAAGACGATAGA 717
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 724 TTCCTCACAATCTTGTATCAAGATCAAGTCGGAGGACTCCAACTTATCAAAGACAATAGA 783
Query 718 TGGATCGCCGTCAAACCTAATTC-AAGAGCTCTCATTATCAATATTGGTGACTTATTTCA 776
|||||||| || ||||||||| | || |||||||||||||||||||||||||||||||||
Sbjct 784 TGGATCGCTGTTAAACCTAATCCTAA-AGCTCTCATTATCAATATTGGTGACTTATTTCA 842
Query 777 GGCATGGAGTAATGACATGTACAAAAGTGTGGAACACCGTGTGATGACGAATCCAACGGT 836
||||||||| |||| ||||||||||||||| |||||||||||||||||||| |||| |||
Sbjct 843 GGCATGGAGCAATGGCATGTACAAAAGTGTTGAACACCGTGTGATGACGAACCCAAAGGT 902
Query 837 GGAGAGATTCTCAACTGCGTATTTTATGTGTCCATCATACGACGCCGTTATAGAGTGTTC 896
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 903 GGAGAGATTCTCAACGGCTTATTTTATGTGTCCATCATACGACGCCGTTATAGAGTGTTC 962
Query 897 AAGTGATTGTCCTGCTTATAGAAATTTTAGCTTCAGAGAATTCAGACAACAAGTTCAAGA 956
||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 963 AAGTGATCGTCCTGCTTATAGAAATTTCAGCTTCAGAGAATTCAGACAACAAGTTCAAGA 1022
Query 957 AGATGTTAAGAAGCTTGGTTTTAAAGTTGGTCTTCCTAGGTTCCTTAATCATC-TCTACT 1015
||||||||||||| |||||||||||||||| |||||||||||||||||||| | ||||||
Sbjct 1023 AGATGTTAAGAAGTTTGGTTTTAAAGTTGGCCTTCCTAGGTTCCTTAATCA-CGTCTACT 1081
Query 1016 AA 1017
||
Sbjct 1082 AA 1083
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49832273824
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5