BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg890075
Length=1605
Score E
Sequences producing significant alignments: (Bits) Value
AT4G21170.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 1515 0.0
> AT4G21170.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr4:11286756-11288754 REVERSE LENGTH=1897
Length=1897
Score = 1515 bits (820), Expect = 0.0
Identities = 920/968 (95%), Gaps = 8/968 (1%)
Strand=Plus/Plus
Query 642 GATTTTGTGTGAACATGGAAGATCCAAGAGTGTTGTTAAATTGATGGAAACAGGTGTTGA 701
|||||| || ||||| || ||||||||||||||| |||||||||||||||||||||||||
Sbjct 934 GATTTTATGCGAACAAGGGAGATCCAAGAGTGTTTTTAAATTGATGGAAACAGGTGTTGA 993
Query 702 AAGCTGCAAGATTTACACCAATCTTGTGGAATGTTATAGCAGAAATGGGGAATTTGATGC 761
|||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||
Sbjct 994 AAGCTGCAAGATTTACACTAATCTTGTGGAATGTTATAGCAGAAATGGAGAGTTTGATGC 1053
Query 762 CGCGTTTAGTTTAATTCATGAGATGGATGGCAAGAAACTGGAGTTGAGTTTCTCTTCTTA 821
| |||||||||||||||||||||||||| ||||||||| ||||||||||| | ||||||
Sbjct 1054 TGTGTTTAGTTTAATTCATGAGATGGATGACAAGAAACTAGAGTTGAGTTTTTGTTCTTA 1113
Query 822 CGGTTGCGTATTGGATAATGCATGTAGATTGGGAGATGCTGAGTTGATCGATAAGGTTCT 881
|||||||||||| ||| ||||||||||||| |||||||||||||| || |||||||||||
Sbjct 1114 CGGTTGCGTATTAGATGATGCATGTAGATTAGGAGATGCTGAGTTCATTGATAAGGTTCT 1173
Query 882 -TGGTTTAATGGTGGAGAAAAAGTTTCTTACTTTAGGTGATTCGGCTGTGAATGATCAAA 940
| |||| |||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 1174 CT-GTTTGATGGTGGAGAAAAAGTTTGTTACTTTAGGTGATTCGGCTGTGAATGATAAAA 1232
Query 941 TGATTGAAAGACTTTGCGATATGGGGAAAACGTTTGCCTCTGAGATGCTTTTCCGTAAAG 1000
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1233 TCATTGAAAGACTTTGCGATATGGGGAAAACGTTTGCCTCTGAGATGCTTTTCCGTAAAG 1292
Query 1001 TCTGCAATGGTGAAACAGTGAGATTGCGGGAGTCGACATACGGTTGTATGTTAAAAGCTC 1060
||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |
Sbjct 1293 CCTGCAATGGTGAAACAGTGAGATTGTGGGATTCGACATACGGTTGTATGTTAAAAGCAC 1352
Query 1061 TGTCAAGAAAAG-AGAGAACAAAAGAAGCTGTTGATGTATATCGAATGATTTGTCGGAAA 1119
||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1353 TGTCAAG-AAAGAAGAGAACAAAAGAAGCTGTTGATGTATATCGAATGATTTGTCGGAAA 1411
Query 1120 GGTATTAATGTACTTGATGAGAGTTGCTATAACGAATTCGCAAATGCCCTTTGCAGAGAT 1179
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1412 GGTATTACTGTACTTGATGAGAGTTGCTATATCGAATTCGCAAATGCCCTTTGCAGAGAT 1471
Query 1180 GATAATAGCTCAGAGGAAGGAGAGGAATTGCTTGTAGATGTTATAAAGCGCGGAAAAGAA 1239
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1472 GATAATAGCTCAGAGGAAGAAGAGGAATTGCTTGTAGATGTTATAAAGCGCGGAAAAGAA 1531
Query 1240 GATGGAAATCCGCAGAGAAGCTTCTTGATTCGGTTATGGAAATGGAGAAGCGGGAAACTA 1299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1532 GATGGAAATCCGCAGAGAAGCTTCTTGATTCGGTTATGGAAATGGAGAAGCGGGAAACTA 1591
Query 1300 GAGAAAGCACTGGAACTACATGAAAAGATAAA-AAAGATGAAAGGAAGTTTAGATGTTAA 1358
||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||| ||
Sbjct 1592 GAGAAAGCACTGGTACTACATGAAAAGATAAAGAAA-ATGAAAGGAAGTTTAGATGTGAA 1650
Query 1359 TGCTTATAACGCGGTTCTTGATCGGCTTATGATGAGGCAAAAAGAGATGGTGGAAGAAGC 1418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1651 TGCTTATAACGCGGTTCTTGATCGGCTTATGATGAGGCAAAAAGAGATGGTGGAAGAAGC 1710
Query 1419 AGTTGGAGTGTTCGAGTACATGAAAGAGATGAAAT-CAGTGAACAGCAAAAGTTTTACAA 1477
||||| |||||| ||||||||||||||||| |||| ||||||||||||| ||||||||||
Sbjct 1711 AGTTGTAGTGTTTGAGTACATGAAAGAGAT-AAATTCAGTGAACAGCAAGAGTTTTACAA 1769
Query 1478 TTATGATTCAAGGGTTGTGTCGTGTGAAGGAGATGAAGAAAGCTATGAGATCTCATGATG 1537
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1770 TTATGATTCAAGGGTTGTGTCGTGTGAAGGAGATGAAGAAAGCTATGAGATCCCATGATG 1829
Query 1538 AAATGTTGAGATTGGACATGAAACCTGATTTAGTATCCTATAAGCGTCTTATCTTAGGTT 1597
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1830 AAATGTTGAGATTGGGTTTGAAACCTGATTTAGTAACCTATAAGCGTCTTATCTTAGGTT 1889
Query 1598 TCAAATGA 1605
||||||||
Sbjct 1890 TCAAATGA 1897
Score = 970 bits (525), Expect = 0.0
Identities = 605/644 (94%), Gaps = 4/644 (1%)
Strand=Plus/Plus
Query 1 ATGGTTC-TACTCCACACAAGTGTTGGATTCTTTAAACGATTTTCGACTTCAGCGACTCC 59
||||||| || |||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 242 ATGGTTCTTA-TCCACACAAGTGTTGGATTCTTCAAACGATTCTCGACTTCAGCGACTCC 300
Query 60 ATCAACATCCTCTGCTTCCGATTGGAAAACCCAACAGACTCTGTTCCGATTAGCCACCGA 119
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 301 ATCAACATCCTCTGCTTCCGATTGGAAAACCCAACAGACTCTGTTCCGAGTAGCCACAGA 360
Query 120 AATCTCTTCGATTCTCTTACAACGTCGTAACTGGATCAGTCATCTCCAATATGTTAAATC 179
||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 361 AATATCTTCAATTCTCTTACAACGTCGTAACTGGATCACTCATCTCCAATATGTTAAATC 420
Query 180 CAAGCTCTCAAGGTCAACACTTACTTCGCCAATATTTCTCCAGATCATCCGTGAAACTCG 239
||||||| ||||||||||||||||||| || |||| ||||||||| |||||||||||||
Sbjct 421 CAAGCTCCCAAGGTCAACACTTACTTCACCTGTATTCCTCCAGATCCTCCGTGAAACTCG 480
Query 240 AAAATGCCCTAAAACCACTCTTGATTTCTTCGATTTTGCCAAAACCCATCTCCGGTTCGA 299
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 481 AAAATGCCCTAAAACCACTCTTGATTTCTTCGATTTTGCCAAAACCCATCTTCGGTTCGA 540
Query 300 GCCGGATCTTAAGTCCCATTGTCGGGTAATAGAAGTTGCTACTGAATCAGGTCTGTTGGA 359
||||||||||||||| |||||||| ||||| ||||||||| ||||||||||||| |||||
Sbjct 541 GCCGGATCTTAAGTCTCATTGTCGAGTAATTGAAGTTGCTGCTGAATCAGGTCTCTTGGA 600
Query 360 ACGAGCAGAAACACTCTTGCGGCCTCTGGTTGAAACTC-ATTCTGTGTCTCTAGTTGTTG 418
||||||||||| |||||||| |||||||||||||| | ||||||||||| |||||||||
Sbjct 601 ACGAGCAGAAATGCTCTTGCGTCCTCTGGTTGAAAC-CAATTCTGTGTCTTTAGTTGTTG 659
Query 419 GATCGATGCATCGGTGGTTTGAAGGTGACGTTTCACTCTCTATCTCGCTTAGCTTAGTGA 478
|| ||||||||||||||||||||||| |||||||| ||| |||||||||||||||||
Sbjct 660 GAGAAATGCATCGGTGGTTTGAAGGTGAAGTTTCACTGTCTGTCTCGCTTAGCTTAGTGC 719
Query 479 TTGAGTGTTATGCCTTAAAGGGTTGTTACCAAAATGGTTTGGAAGTGTTTGGTTTTATGA 538
|||||| |||||||||||||||| || | || ||||||||||||||||||||||||||||
Sbjct 720 TTGAGTATTATGCCTTAAAGGGTAGTCATCATAATGGTTTGGAAGTGTTTGGTTTTATGA 779
Query 539 GAAGATTGAGACTTTCACCTTCTCAAAGTGCTTATAACTCTCTTCTTGGTTCTCTGGTTA 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 GAAGATTGAGACTTTCACCTTCTCAAAGTGCTTATAACTCTCTTCTTGGTTCTCTGGTTA 839
Query 599 AAGAAAACCAGTTTAGAGTGGCTTTGTGTTTGTATAGTGCCATG 642
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 AAGAAAACCAGTTTAGAGTGGCTTTGTGTTTGTATAGTGCCATG 883
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79266660555
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5