BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg890092
Length=858
Score E
Sequences producing significant alignments: (Bits) Value
AT4G21010.1 | Symbols: | Transcription initiation factor TFIIE... 1051 0.0
AT4G20330.1 | Symbols: | Transcription initiation factor TFIIE... 713 0.0
> AT4G21010.1 | Symbols: | Transcription initiation factor TFIIE,
beta subunit | chr4:11226286-11227363 REVERSE LENGTH=859
Length=859
Score = 1051 bits (569), Expect = 0.0
Identities = 754/840 (90%), Gaps = 26/840 (3%)
Strand=Plus/Plus
Query 1 ATGGCTCTACAGGAGCAGCTAAATAAGTTCAATAAACAGCAAGAGAAATGCCAATCTACG 60
|||||| | | ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCTTTGCGGGAGCAGCTTGATAAGTTCAATAAACAGCAAGAGAAATGCCAATCTACG 60
Query 61 CTTTCGAGCATTATTGCTTCTTCAAGAACGGGGCCTT-CGAGGTCATCCGTACCTGCAGC 119
|||||||||||| | ||||||||||||||| |||| |||| |||| ||| ||||||||
Sbjct 61 CTTTCGAGCATT-T--CTTCTTCAAGAACGGC-CCTTTCGAGATCATACGTGCCTGCAGC 116
Query 120 AACAACCAGTCAGAAGCCTAATGCAGTTCGTGGCAAGTTTTCAGAAAATACAAAGCAGCT 179
||||||||||||||||||||||| | |||||||||||||||||||||| |||||||| ||
Sbjct 117 AACAACCAGTCAGAAGCCTAATGTATTTCGTGGCAAGTTTTCAGAAAACACAAAGCAACT 176
Query 180 TCAGCACATTAACAACATAAGAAACAGTGCTGTTGGAGCTCAAATGAAGCTTGTCATTGA 239
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 177 TCAGCACATTACCAACATAAGAAACAGTGCTGTTGGAGCTCAAATGAAGATTGTCATTGA 236
Query 240 TCTTTTGCTTAAG-C----CTAGCT-ATACGGCGGAGCAAATAAATGAAGCTTGTTATGT 293
||||||| ||||| | |||||| ||||||| ||||||||||||||||||||||| ||
Sbjct 237 TCTTTTGTTTAAGACAAGGCTAGCTTATACGGCAGAGCAAATAAATGAAGCTTGTTACGT 296
Query 294 TGATATG-ACTGCCAATAAGGCTGTTTTTAATAGTTTGAGGAAGAATCCGAAAGTGCATT 352
||||||| | | ||| |||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 297 TGATATGCA-TAACAACAAGGCTGTTTTTGATAGTTTGAGGAAGAATCCTAAAGTGCATT 355
Query 353 ATGACGGAAGATCAAGGTTCTCTTATAAGGCTACGCACGATATCAAGGACAAGAAGCAGC 412
||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 356 ATGACGGAAGA--A-GGTTCTCTTATAAGGCTACGCACAATATCAAGGACAAGAAGCAAC 412
Query 413 TTCTTTCGTTTGTGAATAAATCCTCTAATGTGATTGATGTGGT-TGATCTCAAAGATGCT 471
|||||||||||||||||||||| ||| |||||||||||| | ||||||||||||||||
Sbjct 413 TTCTTTCGTTTGTGAATAAATCAGATAAGGTGATTGATGTG-TCTGATCTCAAAGATGCT 471
Query 472 TACCCTAATGTCATGGAAGATTTGCAGGCTTTGAAAGCTTCAGGAGACATCTTCTGGTTG 531
||||| ||||| |||||||||||| || || | ||| |||||||||| ||||||||||||
Sbjct 472 TACCCGAATGTAATGGAAGATTTGAAGTCTCTAAAATCTTCAGGAGAAATCTTCTGGTTG 531
Query 532 CCATCAAACACTGGTTCAAAAGAGGGTATTGTGTATCCAAATGATTTAAAGTATCCGAAG 591
| ||||||||||| |||||||||||| | |||||||| |||| || | |||||||||||
Sbjct 532 CTATCAAACACTGATTCAAAAGAGGGCACTGTGTATCGAAATAATATGGAGTATCCGAAG 591
Query 592 ATTGATGACGAACTTAAAGCTCTTTTCCGCGACATAGACATTCCGAGCGACATGCTTGAC 651
||||||||||| ||||||||||| ||||| ||||| ||| |||||||||||||||||
Sbjct 592 ATTGATGACGAGCTTAAAGCTCTATTCCGTGACAT---CATCCCGAGCGACATGCTTGAG 648
Query 652 GTGGAGAAGGAGCTGCTGAAGATTGGTTTGAAGCCGGCGACAAACACTGCAGAGAGGAGA 711
|||||||||||| |||||||||||||||||||||| || ||||||| |||||||||||||
Sbjct 649 GTGGAGAAGGAGTTGCTGAAGATTGGTTTGAAGCCAGCCACAAACATTGCAGAGAGGAGA 708
Query 712 GCTGCTGCACAGCTCCATGGCGTATCGAATAAACCgaaag-ataagaagaagaagaagaa 770
||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||| ||
Sbjct 709 GCTGCTGAACAGCTCCATGGCGTATCGAATAAACC-AAAGGATAAGAAGAAGAAGAA-AA 766
Query 771 acaagagatcagcaagagaaCCAAACTCACCAATTCCCATATTCCCGAGCTCTTCCAGAG 830
| | ||||||| ||| |||||||||||||||||||||||||| | |||||||||||||||
Sbjct 767 A-A-GAGATCACCAACAGAACCAAACTCACCAATTCCCATATGCTCGAGCTCTTCCAGAG 824
> AT4G20330.1 | Symbols: | Transcription initiation factor TFIIE,
beta subunit | chr4:10982517-10984521 REVERSE LENGTH=1154
Length=1154
Score = 713 bits (386), Expect = 0.0
Identities = 733/890 (82%), Gaps = 65/890 (7%)
Strand=Plus/Plus
Query 1 ATGGCTCTACAGGAGCAGCTAAATAAGTTCAATAAACAGCAAGAGAAATGCCAATCTACG 60
||||||||| |||| |||||| |||| ||||| |||||||||| |||||||||||||||
Sbjct 128 ATGGCTCTAAAGGAACAGCTAGATAAATTCAACAAACAGCAAGTGAAATGCCAATCTACT 187
Query 61 CTTTCGAGCATTATTGCTTCTT-C-----AAGAACGGGGCCTTCGAGGTC---A--T-CC 108
||||||||| |||||||||| | ||||||| | |||||||| | | | ||
Sbjct 188 CTTTCGAGC---ATTGCTTCTTCCAGAGAAAGAACGAGTTCTTCGAGG-CAGAATGTGCC 243
Query 109 -GTACCTGCAGCAA-CAAC-CAGTCAGAAGCCTAATGCAGTTCGTGGCAAGTTTTC-AGA 164
| ||||| |||| | || ||| |||||||| |||||| || || ||||||||| ||
Sbjct 244 TTTGCCTGCGGCAATC-ACGCAG-AAGAAGCCTGATGCAGCTCCTGTCAAGTTTTCAAG- 300
Query 165 AAATACAAAGCAG-CTTCAGCACATTAACAACATAAGAAACAG-TGCTGTTGGAGCTCAA 222
|||| ||| | |||||| ||||||||||||| ||||| || | ||||||||||||||
Sbjct 301 CGATACCGAGC-GACTTCAGAACATTAACAACATTAGAAA-AGCTCCTGTTGGAGCTCAA 358
Query 223 ATGAAGCTTGTCATTGATC-T-T-T-TG-CTTAAGCCTAG-CTAT-ACGGCGGAGCAAAT 275
|| |||| ||||||||||| | | | || ||| |||| || | ||| | ||||||||
Sbjct 359 ATCAAGCGTGTCATTGATCTTCTCTATGAGAGAAGGCTAGCCT-TGACGCCAGAGCAAAT 417
Query 276 AAATGAA-GCTTGTTATGTTGATATGAC-TGCCAATAAGGCTGTTTTTAATAGTTTGAGG 333
||||||| | ||| |||| |||||| | ||| ||||||||||||||| ||||||| |||
Sbjct 418 AAATGAATG-GTGTCATGTAGATATG-CATGCTAATAAGGCTGTTTTTGATAGTTTAAGG 475
Query 334 AAGAATCCGAAAGTGCATTATGACGGAAGATCAAGGTTCTCTTATAAGGCTACGCACGAT 393
||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 476 AAGAATCCGAAAGCACATTATGATGGAAG---AAGGTTCTCTTATAAGGCTACGCACGAT 532
Query 394 ATCAAGGACAAGAAGCAGCTTCTTTCGTTTGTGA-ATAAAT-CCTCTAATGTGATTGATG 451
| || || ||||| ||||||||||| || |||| | |||| ||| | ||| ||||| |
Sbjct 533 GTTAATGATAAGAACCAGCTTCTTTCATTGGTGAGA-AAATACCT-TGATGGGATTGCGG 590
Query 452 TGGTTGATCTCAAAGATGCTTACCCTAATGTCATGGAAGATTTGCAGGCTTTGAAAGCTT 511
|||||||||||||||| |||||||||||||| ||||| |||||| ||||| ||| ||||
Sbjct 591 TGGTTGATCTCAAAGACGCTTACCCTAATGTAATGGAGGATTTGAAGGCTCTGAGTGCTT 650
Query 512 CAGGAGACATCTTCTGGTTGCCATCAAACACTGGTTCAAAAGAGGGTATTGTGTATCCAA 571
|||| ||||||| | |||| ||| || | |||| |||||| |||| || ||||
Sbjct 651 CAGGGGACATCTAC---TTGCTATC-AA-A----TTCACAAGAGGACATTGCATACCCAA 701
Query 572 ATGATTTAAAGTATCCG---AAGATTGATGACGAACTTAAAGCTCTTTTCCGCGACATAG 628
||||||| |||| | | ||| ||||||||||| |||||||||| ||||| ||||||
Sbjct 702 ATGATTTCAAGTGTGAGATTAAGGTTGATGACGAATTTAAAGCTCTATTCCGTGACATAA 761
Query 629 ACATTCCGAGCGACATGCTTGACGTGGAGAAGGAGCTGCTGAAGATTGGTTTGAAGCCGG 688
|||| |||| ||||||||| ||||||||||||||||||||||| || |||||||||||||
Sbjct 762 ACATCCCGAACGACATGCTGGACGTGGAGAAGGAGCTGCTGAAAATCGGTTTGAAGCCGG 821
Query 689 CGACAAACACTGCAGAGAGGAGAGCTGCTGCACAG-CTCCATGGCGTATCGAATAAACCg 747
||||||||||||||||||||||||||||||||||| | | ||||| |||||||||||||
Sbjct 822 CGACAAACACTGCAGAGAGGAGAGCTGCTGCACAGACGC-ATGGCATATCGAATAAACC- 879
Query 748 aaag-ataagaagaagaagaagaaacaagagatcagcaagagaaCCAAACTCACCAATTC 806
|||| |||||||||||||||| | ||||||||||||||||||||||||||||||||| |
Sbjct 880 AAAGGATAAGAAGAAGAAGAA-A--CAAGAGATCAGCAAGAGAACCAAACTCACCAATGC 936
Query 807 CCATATTCCCGAGCTCTTCCAGAGCCTTAACGCCAGCAGTTCTGGGAACT 856
|||| |||||||||| ||||||| |||||||| ||||||||| ||||||
Sbjct 937 CCATCTTCCCGAGCTTTTCCAGAACCTTAACGGCAGCAGTTCCCGGAACT 986
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41845044451
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5